Wall clock time and date at job start Wed Apr 1 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35495 * 126.98109 * 2 1 4 4 N 1.30521 * 107.30784 * 180.22363 * 3 2 1 5 5 N 1.28593 * 109.67180 * 359.77500 * 4 3 2 6 6 C 1.30525 * 109.67226 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.34515 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.99626 * 164.66556 * 7 6 5 9 9 C 1.54319 * 109.88693 * 285.76383 * 7 6 5 10 10 C 1.55150 * 102.94531 * 141.60783 * 9 7 6 11 11 C 1.55123 * 101.48769 * 324.33564 * 10 9 7 12 12 N 1.47030 * 109.88083 * 43.57227 * 7 6 5 13 13 C 1.34779 * 125.64768 * 61.60599 * 12 7 6 14 14 O 1.21586 * 119.99852 * 359.97438 * 13 12 7 15 15 N 1.34779 * 119.99707 * 180.02562 * 13 12 7 16 16 C 1.46497 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.09007 * 109.47078 * 34.99474 * 16 15 13 18 18 C 1.50694 * 109.47115 * 154.99835 * 16 15 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.53000 * 109.47021 * 275.00054 * 16 15 13 27 27 F 1.39897 * 109.46935 * 299.99908 * 26 16 15 28 28 F 1.39899 * 109.47307 * 59.99998 * 26 16 15 29 29 F 1.39901 * 109.47163 * 180.02562 * 26 16 15 30 30 H 1.08995 * 109.47271 * 270.16112 * 1 2 3 31 31 H 1.09007 * 109.46702 * 30.15492 * 1 2 3 32 32 H 1.08998 * 109.47168 * 150.15639 * 1 2 3 33 33 H 1.07997 * 126.34734 * 359.97438 * 3 2 1 34 34 H 1.09004 * 110.72049 * 259.97562 * 9 7 6 35 35 H 1.09008 * 110.71537 * 23.24563 * 9 7 6 36 36 H 1.09004 * 111.00290 * 82.57804 * 10 9 7 37 37 H 1.09000 * 111.00893 * 206.38671 * 10 9 7 38 38 H 1.08999 * 110.49495 * 278.45080 * 11 10 9 39 39 H 1.08998 * 110.34548 * 156.06031 * 11 10 9 40 40 H 0.96997 * 119.99849 * 359.97438 * 15 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6430 -0.0031 6 6 2.2800 -1.0823 0.0035 7 6 1.8476 -2.5260 0.0070 8 1 0.7957 -2.5994 0.2833 9 6 2.0676 -3.1433 -1.3901 10 6 2.5615 -4.5772 -1.0628 11 6 3.4072 -4.3287 0.2137 12 7 2.6686 -3.2915 0.9566 13 6 2.7386 -3.0768 2.2853 14 8 2.0862 -2.1847 2.7922 15 7 3.5326 -3.8504 3.0520 16 6 3.6091 -3.6167 4.4962 17 1 2.6340 -3.2982 4.8649 18 6 4.0172 -4.8905 5.1902 19 1 4.2007 -5.7849 4.6134 20 6 4.1552 -4.9145 6.5619 21 7 3.9312 -3.8255 7.2645 22 14 4.6603 -6.4937 7.4223 23 1 4.7380 -6.2568 8.8863 24 1 3.6562 -7.5519 7.1442 25 1 5.9888 -6.9278 6.9204 26 6 4.6434 -2.5261 4.7822 27 9 5.8949 -2.9348 4.3089 28 9 4.2646 -1.3435 4.1379 29 9 4.7170 -2.3034 6.1614 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8887 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 1.9703 2.1169 -0.0004 34 1 1.1324 -3.1757 -1.9491 35 1 2.8283 -2.5897 -1.9408 36 1 1.7225 -5.2417 -0.8564 37 1 3.1800 -4.9711 -1.8692 38 1 4.4017 -3.9699 -0.0513 39 1 3.4776 -5.2415 0.8053 40 1 4.0532 -4.5618 2.6475 41 1 4.0280 -3.8425 8.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932910132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:01 Heat of formation + Delta-G solvation = -68.494220 kcal Electronic energy + Delta-G solvation = -32875.497850 eV Core-core repulsion = 27992.450759 eV Total energy + Delta-G solvation = -4883.047091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.21365 -45.85782 -45.50143 -42.95645 -39.85038 -37.42702 -34.97252 -34.59010 -32.69054 -31.40641 -31.34316 -28.42153 -27.92127 -27.56935 -24.51934 -23.86157 -22.31686 -21.83812 -21.60845 -20.48937 -19.29826 -18.21020 -17.25023 -16.81784 -16.66426 -16.51066 -16.31210 -16.10385 -15.69287 -15.08141 -14.87030 -14.71601 -14.22425 -14.00910 -13.60476 -13.43509 -13.10487 -13.04883 -12.88111 -12.70135 -12.46257 -12.33414 -12.25355 -12.17172 -11.88520 -11.85852 -11.72254 -11.38509 -11.31070 -11.12743 -11.02244 -10.83529 -10.74118 -10.36219 -10.16632 -10.06846 -9.64885 -9.56969 -9.05526 -8.68890 -8.54683 -8.09472 -6.19635 -4.43638 1.88189 2.50975 2.92430 3.18574 3.21995 3.26960 3.29140 3.73344 4.17269 4.20665 4.35445 4.45531 4.52613 4.62794 4.66046 4.72452 4.83529 4.89965 4.98378 5.00481 5.19782 5.27380 5.46880 5.51924 5.61635 5.69825 5.80154 5.91135 5.94532 5.98564 6.05954 6.25436 6.29259 6.39903 6.90933 6.93404 7.25717 7.40976 7.64568 7.69212 8.52059 8.62712 8.94088 9.16063 9.27276 10.71929 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.003984 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.551549 B = 7026.571347 C = 7893.904242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.471 5.471 3 C 0.143 3.857 4 N -0.297 5.297 5 N -0.276 5.276 6 C 0.178 3.822 7 C 0.248 3.752 8 H 0.087 0.913 9 C -0.121 4.121 10 C -0.127 4.127 11 C 0.099 3.901 12 N -0.626 5.626 13 C 0.723 3.277 14 O -0.580 6.580 15 N -0.720 5.720 16 C 0.264 3.736 17 H 0.083 0.917 18 C -0.552 4.552 19 H 0.076 0.924 20 C 0.065 3.935 21 N -0.840 5.840 22 Si 0.916 3.084 23 H -0.284 1.284 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.416 3.584 27 F -0.209 7.209 28 F -0.215 7.215 29 F -0.139 7.139 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.215 0.785 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.395 0.605 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 0.883 -17.549 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.162 5.162 3 C -0.144 4.144 4 N -0.136 5.136 5 N -0.116 5.116 6 C -0.091 4.091 7 C 0.139 3.861 8 H 0.105 0.895 9 C -0.160 4.160 10 C -0.165 4.165 11 C -0.024 4.024 12 N -0.365 5.365 13 C 0.426 3.574 14 O -0.456 6.456 15 N -0.373 5.373 16 C 0.158 3.842 17 H 0.100 0.900 18 C -0.589 4.589 19 H 0.094 0.906 20 C -0.144 4.144 21 N -0.473 5.473 22 Si 0.742 3.258 23 H -0.209 1.209 24 H -0.198 1.198 25 H -0.198 1.198 26 C 0.359 3.641 27 F -0.191 7.191 28 F -0.197 7.197 29 F -0.120 7.120 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.229 0.771 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.454 1.690 -16.795 18.453 hybrid contribution -0.680 -0.515 0.550 1.015 sum -8.134 1.175 -16.245 18.206 Atomic orbital electron populations 1.22083 0.75712 1.04583 1.04592 1.46071 1.09002 1.06688 1.54470 1.26327 0.87430 0.94714 1.05930 1.74236 1.18027 1.03525 1.17854 1.74198 1.16904 1.02799 1.17702 1.25100 0.87614 0.92213 1.04167 1.19446 0.94954 0.81593 0.90078 0.89493 1.22701 1.02849 0.96549 0.93898 1.22787 1.00234 0.96011 0.97457 1.22350 0.95980 0.91313 0.92772 1.47444 1.48826 1.35579 1.04698 1.15506 0.80824 0.81978 0.79142 1.90898 1.48896 1.34164 1.71687 1.45239 1.47142 1.36116 1.08772 1.19588 0.95142 0.93625 0.75819 0.89952 1.20824 1.51525 0.94540 0.91973 0.90566 1.25081 0.94609 0.97374 0.97319 1.70409 1.43635 1.25866 1.07368 0.86266 0.79241 0.82037 0.78243 1.20896 1.19822 1.19803 1.23113 0.82602 0.82734 0.75608 1.92984 1.46487 1.90705 1.88951 1.93094 1.91259 1.52625 1.82675 1.93392 1.96158 1.94792 1.27671 0.89626 0.89112 0.89372 0.76871 0.89620 0.89675 0.90181 0.89439 0.90934 0.90234 0.77140 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.85 59.85 0.65 1.21 16 2 N -0.47 -6.11 3.15 -122.69 -0.39 -6.50 16 3 C 0.14 1.98 12.74 -89.94 -1.15 0.83 16 4 N -0.30 -5.52 12.21 29.69 0.36 -5.15 16 5 N -0.28 -5.35 12.21 32.80 0.40 -4.95 16 6 C 0.18 2.82 5.97 -154.99 -0.93 1.90 16 7 C 0.25 3.29 3.14 -68.10 -0.21 3.08 16 8 H 0.09 1.05 7.30 -51.93 -0.38 0.67 16 9 C -0.12 -1.08 6.46 -24.90 -0.16 -1.24 16 10 C -0.13 -1.02 7.10 -24.47 -0.17 -1.19 16 11 C 0.10 1.18 6.59 -2.41 -0.02 1.16 16 12 N -0.63 -10.12 3.05 -169.86 -0.52 -10.64 16 13 C 0.72 15.47 7.81 -86.91 -0.68 14.79 16 14 O -0.58 -14.50 14.75 5.29 0.08 -14.43 16 15 N -0.72 -15.77 4.94 -59.81 -0.30 -16.06 16 16 C 0.26 6.87 2.21 -69.09 -0.15 6.71 16 17 H 0.08 2.38 7.58 -51.92 -0.39 1.99 16 18 C -0.55 -14.36 8.46 -34.44 -0.29 -14.65 16 19 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 20 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 21 N -0.84 -23.53 9.50 55.43 0.53 -23.00 16 22 Si 0.92 20.32 29.54 -169.99 -5.02 15.29 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 C 0.42 11.42 2.81 37.16 0.10 11.52 16 27 F -0.21 -5.59 16.94 2.25 0.04 -5.55 16 28 F -0.21 -6.08 15.67 2.25 0.04 -6.05 16 29 F -0.14 -4.04 12.91 2.25 0.03 -4.01 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.49 7.49 -51.93 -0.39 0.10 16 33 H 0.21 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.85 7.84 -51.92 -0.41 0.44 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.88 7.29 -51.93 -0.38 0.50 16 40 H 0.39 7.55 7.01 -40.82 -0.29 7.27 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -37.93 353.00 -7.26 -45.19 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.73 Total: 4.79 kcal Atomic # 6 Polarization: 28.85 SS G_CDS: -3.10 Total: 25.75 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: 0.09 Total: -66.31 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 9 Polarization: -15.71 SS G_CDS: 0.10 Total: -15.61 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.93 -7.26 -45.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.306 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds