Wall clock time and date at job start Wed Apr 1 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35495 * 126.98109 * 2 1 4 4 N 1.30521 * 107.30784 * 180.22363 * 3 2 1 5 5 N 1.28593 * 109.67180 * 359.77500 * 4 3 2 6 6 C 1.30525 * 109.67226 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.34515 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.99626 * 164.66556 * 7 6 5 9 9 C 1.54319 * 109.88693 * 285.76383 * 7 6 5 10 10 C 1.55150 * 102.94531 * 141.60783 * 9 7 6 11 11 C 1.55123 * 101.48769 * 324.33564 * 10 9 7 12 12 N 1.47030 * 109.88083 * 43.57227 * 7 6 5 13 13 C 1.34779 * 125.64768 * 61.60599 * 12 7 6 14 14 O 1.21586 * 119.99852 * 359.97438 * 13 12 7 15 15 N 1.34779 * 119.99707 * 180.02562 * 13 12 7 16 16 C 1.46497 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.09007 * 109.47078 * 34.99474 * 16 15 13 18 18 C 1.50694 * 109.47115 * 154.99835 * 16 15 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.53000 * 109.47021 * 275.00054 * 16 15 13 27 27 F 1.39897 * 109.46935 * 299.99908 * 26 16 15 28 28 F 1.39899 * 109.47307 * 59.99998 * 26 16 15 29 29 F 1.39901 * 109.47163 * 180.02562 * 26 16 15 30 30 H 1.08995 * 109.47271 * 270.16112 * 1 2 3 31 31 H 1.09007 * 109.46702 * 30.15492 * 1 2 3 32 32 H 1.08998 * 109.47168 * 150.15639 * 1 2 3 33 33 H 1.07997 * 126.34734 * 359.97438 * 3 2 1 34 34 H 1.09004 * 110.72049 * 259.97562 * 9 7 6 35 35 H 1.09008 * 110.71537 * 23.24563 * 9 7 6 36 36 H 1.09004 * 111.00290 * 82.57804 * 10 9 7 37 37 H 1.09000 * 111.00893 * 206.38671 * 10 9 7 38 38 H 1.08999 * 110.49495 * 278.45080 * 11 10 9 39 39 H 1.08998 * 110.34548 * 156.06031 * 11 10 9 40 40 H 0.96997 * 119.99849 * 359.97438 * 15 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6430 -0.0031 6 6 2.2800 -1.0823 0.0035 7 6 1.8476 -2.5260 0.0070 8 1 0.7957 -2.5994 0.2833 9 6 2.0676 -3.1433 -1.3901 10 6 2.5615 -4.5772 -1.0628 11 6 3.4072 -4.3287 0.2137 12 7 2.6686 -3.2915 0.9566 13 6 2.7386 -3.0768 2.2853 14 8 2.0862 -2.1847 2.7922 15 7 3.5326 -3.8504 3.0520 16 6 3.6091 -3.6167 4.4962 17 1 2.6340 -3.2982 4.8649 18 6 4.0172 -4.8905 5.1902 19 1 4.2007 -5.7849 4.6134 20 6 4.1552 -4.9145 6.5619 21 7 3.9312 -3.8255 7.2645 22 14 4.6603 -6.4937 7.4223 23 1 4.7380 -6.2568 8.8863 24 1 3.6562 -7.5519 7.1442 25 1 5.9888 -6.9278 6.9204 26 6 4.6434 -2.5261 4.7822 27 9 5.8949 -2.9348 4.3089 28 9 4.2646 -1.3435 4.1379 29 9 4.7170 -2.3034 6.1614 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8887 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 1.9703 2.1169 -0.0004 34 1 1.1324 -3.1757 -1.9491 35 1 2.8283 -2.5897 -1.9408 36 1 1.7225 -5.2417 -0.8564 37 1 3.1800 -4.9711 -1.8692 38 1 4.4017 -3.9699 -0.0513 39 1 3.4776 -5.2415 0.8053 40 1 4.0532 -4.5618 2.6475 41 1 4.0280 -3.8425 8.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932910132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:00 Heat of formation + Delta-G solvation = -94.506042 kcal Electronic energy + Delta-G solvation = -32876.625807 eV Core-core repulsion = 27992.450759 eV Total energy + Delta-G solvation = -4884.175048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.45377 -48.09675 -47.76601 -44.06624 -41.25493 -38.74647 -36.48861 -35.96114 -34.55938 -32.74960 -32.36860 -29.97715 -29.24091 -28.36337 -26.61401 -25.10398 -23.61340 -23.25128 -22.68712 -21.81845 -20.86727 -19.64622 -18.91983 -18.78640 -18.64171 -18.16364 -17.64529 -17.44218 -17.14396 -16.75806 -16.43280 -15.88863 -15.60606 -15.16030 -15.10469 -14.98785 -14.65707 -14.50975 -14.35350 -14.32714 -14.16724 -14.10210 -13.99101 -13.87716 -13.64348 -13.31109 -13.01496 -12.81312 -12.72024 -12.60814 -12.46625 -12.25456 -12.10634 -11.72342 -11.61650 -11.33457 -11.26455 -11.05695 -10.68773 -10.30351 -10.18722 -9.60888 -8.21977 -6.53778 0.80823 1.43749 1.48725 1.49990 1.58541 1.72755 1.95950 2.10926 2.36475 2.53351 2.93039 3.03560 3.21996 3.55071 3.70665 3.74829 3.76073 3.84865 3.89361 3.97440 4.13544 4.20843 4.34637 4.48278 4.54390 4.65018 4.72842 4.79643 4.86735 4.91698 4.97946 5.10755 5.19884 5.27590 5.37110 5.40460 5.53406 5.63205 5.99879 6.05793 6.51240 7.00592 7.16659 7.57657 7.77948 8.71044 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.003984 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.551549 B = 7026.571347 C = 7893.904242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.471 5.471 3 C 0.154 3.846 4 N -0.356 5.356 5 N -0.331 5.331 6 C 0.171 3.829 7 C 0.236 3.764 8 H 0.101 0.899 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.085 3.915 12 N -0.623 5.623 13 C 0.717 3.283 14 O -0.625 6.625 15 N -0.718 5.718 16 C 0.276 3.724 17 H 0.045 0.955 18 C -0.560 4.560 19 H 0.094 0.906 20 C 0.014 3.986 21 N -0.876 5.876 22 Si 0.987 3.013 23 H -0.284 1.284 24 H -0.258 1.258 25 H -0.266 1.266 26 C 0.410 3.590 27 F -0.206 7.206 28 F -0.224 7.224 29 F -0.150 7.150 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.259 0.741 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.407 0.593 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 -1.048 -19.622 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.161 5.161 3 C -0.134 4.134 4 N -0.195 5.195 5 N -0.170 5.170 6 C -0.100 4.100 7 C 0.128 3.872 8 H 0.119 0.881 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.037 4.037 12 N -0.361 5.361 13 C 0.419 3.581 14 O -0.505 6.505 15 N -0.371 5.371 16 C 0.168 3.832 17 H 0.063 0.937 18 C -0.597 4.597 19 H 0.111 0.889 20 C -0.191 4.191 21 N -0.510 5.510 22 Si 0.810 3.190 23 H -0.210 1.210 24 H -0.183 1.183 25 H -0.191 1.191 26 C 0.354 3.646 27 F -0.188 7.188 28 F -0.206 7.206 29 F -0.132 7.132 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.275 0.725 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.243 0.757 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.825 -0.272 -18.958 20.913 hybrid contribution -0.311 0.188 1.146 1.202 sum -9.136 -0.083 -17.812 20.018 Atomic orbital electron populations 1.22501 0.72525 1.07791 1.04835 1.46382 1.10847 1.05593 1.53252 1.27150 0.86497 0.96592 1.03189 1.74086 1.20956 1.03744 1.20718 1.74043 1.19367 1.03559 1.20068 1.25509 0.87414 0.93779 1.03277 1.20024 0.94970 0.80418 0.91765 0.88145 1.22739 1.04580 0.96216 0.91140 1.22807 1.00421 0.95774 0.95730 1.22701 0.96118 0.90322 0.94526 1.47483 1.48837 1.36454 1.03288 1.15699 0.80292 0.81297 0.80834 1.90849 1.50517 1.35859 1.73273 1.44996 1.47848 1.36870 1.07427 1.19156 0.92683 0.93173 0.78153 0.93725 1.21175 1.51239 0.94827 0.92468 0.88850 1.26062 0.94269 1.00743 0.98064 1.70544 1.44663 1.28239 1.07585 0.85154 0.79249 0.77888 0.76681 1.20992 1.18252 1.19099 1.23518 0.83179 0.82872 0.75039 1.92973 1.46334 1.90621 1.88858 1.93073 1.91379 1.53347 1.82797 1.93368 1.96260 1.94903 1.28623 0.90737 0.85284 0.87003 0.72530 0.85587 0.90877 0.88267 0.86699 0.91900 0.89355 0.75650 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.85 127.77 1.39 2.20 16 2 N -0.47 -11.70 3.15 -542.07 -1.71 -13.41 16 3 C 0.15 4.17 12.74 180.11 2.30 6.47 16 4 N -0.36 -13.62 12.21 -59.99 -0.73 -14.35 16 5 N -0.33 -13.20 12.21 -50.15 -0.61 -13.81 16 6 C 0.17 5.38 5.97 137.98 0.82 6.20 16 7 C 0.24 5.92 3.14 44.59 0.14 6.06 16 8 H 0.10 2.22 7.30 -2.38 -0.02 2.20 16 9 C -0.11 -1.58 6.46 31.78 0.21 -1.38 16 10 C -0.11 -1.35 7.10 32.06 0.23 -1.12 16 11 C 0.09 1.90 6.59 86.93 0.57 2.47 16 12 N -0.62 -19.88 3.05 -809.59 -2.47 -22.35 16 13 C 0.72 31.33 7.81 179.05 1.40 32.73 16 14 O -0.62 -32.44 14.75 -3.99 -0.06 -32.50 16 15 N -0.72 -32.03 4.94 -461.41 -2.28 -34.31 16 16 C 0.28 14.78 2.21 44.24 0.10 14.88 16 17 H 0.05 2.73 7.58 -2.38 -0.02 2.71 16 18 C -0.56 -29.24 8.46 25.60 0.22 -29.03 16 19 H 0.09 4.44 7.74 -2.91 -0.02 4.42 16 20 C 0.01 0.73 5.20 84.66 0.44 1.17 16 21 N -0.88 -50.09 9.50 21.45 0.20 -49.89 16 22 Si 0.99 41.10 29.54 68.60 2.03 43.13 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 C 0.41 23.31 2.81 71.98 0.20 23.51 16 27 F -0.21 -11.23 16.94 44.97 0.76 -10.46 16 28 F -0.22 -13.26 15.67 44.97 0.70 -12.56 16 29 F -0.15 -9.05 12.91 44.97 0.58 -8.47 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.11 0.88 7.49 -2.39 -0.02 0.86 16 33 H 0.26 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.30 7.84 -2.38 -0.02 1.28 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.79 7.29 -2.39 -0.02 1.78 16 40 H 0.41 15.61 7.01 -92.71 -0.65 14.96 16 41 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -88.34 353.00 4.87 -83.47 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.45 Total: 21.34 kcal Atomic # 6 Polarization: 56.16 SS G_CDS: 8.01 Total: 64.17 kcal Atomic # 7 Polarization: -140.52 SS G_CDS: -7.60 Total: -148.11 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.06 Total: -32.50 kcal Atomic # 9 Polarization: -33.54 SS G_CDS: 2.05 Total: -31.49 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -88.34 4.87 -83.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.032 kcal (2) G-P(sol) polarization free energy of solvation -88.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds