Wall clock time and date at job start Wed Apr 1 2020 04:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.35503 * 126.97939 * 2 1 4 4 N 1.30526 * 107.30582 * 180.22545 * 3 2 1 5 5 N 1.28596 * 109.67210 * 359.77355 * 4 3 2 6 6 C 1.30523 * 109.67518 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34773 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.99662 * 195.38075 * 7 6 5 9 9 C 1.54318 * 109.88307 * 74.28425 * 7 6 5 10 10 C 1.55160 * 102.94100 * 218.38965 * 9 7 6 11 11 C 1.54909 * 101.58106 * 35.50559 * 10 9 7 12 12 N 1.47026 * 109.87973 * 316.47471 * 7 6 5 13 13 C 1.34771 * 125.65100 * 298.09234 * 12 7 6 14 14 O 1.21587 * 120.00199 * 0.02562 * 13 12 7 15 15 N 1.34778 * 120.00238 * 179.97438 * 13 12 7 16 16 C 1.46495 * 120.00121 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47574 * 325.00548 * 16 15 13 18 18 C 1.50704 * 109.47350 * 205.00159 * 16 15 13 19 19 H 1.08005 * 119.99491 * 0.02562 * 18 16 15 20 20 C 1.37877 * 120.00408 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99663 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00002 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47234 * 60.00390 * 22 20 18 24 24 H 1.48506 * 109.46858 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47202 * 300.00006 * 22 20 18 26 26 C 1.52998 * 109.46781 * 85.00523 * 16 15 13 27 27 F 1.39902 * 109.47381 * 60.00197 * 26 16 15 28 28 F 1.39907 * 109.47028 * 179.97438 * 26 16 15 29 29 F 1.39901 * 109.47189 * 299.99470 * 26 16 15 30 30 H 1.08997 * 109.47275 * 270.15326 * 1 2 3 31 31 H 1.09005 * 109.47638 * 30.15734 * 1 2 3 32 32 H 1.09004 * 109.47163 * 150.15224 * 1 2 3 33 33 H 1.07994 * 126.34741 * 359.97438 * 3 2 1 34 34 H 1.09003 * 110.72326 * 336.75342 * 9 7 6 35 35 H 1.08998 * 110.72230 * 100.03119 * 9 7 6 36 36 H 1.09006 * 111.00068 * 153.57567 * 10 9 7 37 37 H 1.08992 * 111.00480 * 277.38794 * 10 9 7 38 38 H 1.08996 * 110.36158 * 204.14752 * 11 10 9 39 39 H 1.09002 * 110.36956 * 81.83034 * 11 10 9 40 40 H 0.97000 * 119.99585 * 0.02562 * 15 13 12 41 41 H 0.97003 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6430 -0.0049 5 7 3.5090 -0.6429 -0.0032 6 6 2.2800 -1.0823 0.0024 7 6 1.8476 -2.5260 0.0055 8 1 0.7935 -2.5999 -0.2617 9 6 2.0794 -3.1402 1.4021 10 6 2.5705 -4.5749 1.0735 11 6 3.4013 -4.3326 -0.2113 12 7 2.6605 -3.2935 -0.9493 13 6 2.7150 -3.0853 -2.2798 14 8 2.0540 -2.1980 -2.7839 15 7 3.5030 -3.8599 -3.0514 16 6 3.5618 -3.6340 -4.4976 17 1 2.5813 -3.3214 -4.8568 18 6 3.9668 -4.9101 -5.1895 19 1 4.1605 -5.8006 -4.6097 20 6 4.0889 -4.9413 -6.5625 21 7 3.8524 -3.8571 -7.2683 22 14 4.5902 -6.5232 -7.4199 23 1 3.5936 -7.5837 -7.1244 24 1 4.6498 -6.2941 -8.8860 25 1 5.9261 -6.9493 -6.9312 26 6 4.5885 -2.5411 -4.8017 27 9 5.8470 -2.9423 -4.3409 28 9 4.6451 -2.3257 -6.1829 29 9 4.2125 -1.3564 -4.1596 30 1 -0.3634 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5163 32 1 -0.3634 -0.8914 -0.5115 33 1 1.9701 2.1170 -0.0004 34 1 2.8446 -2.5856 1.9452 35 1 1.1489 -3.1716 1.9689 36 1 3.1963 -4.9669 1.8754 37 1 1.7298 -5.2400 0.8763 38 1 3.4621 -5.2469 -0.8016 39 1 4.3999 -3.9778 0.0439 40 1 4.0307 -4.5676 -2.6492 41 1 3.9380 -3.8790 -8.2343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932910134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:05 Heat of formation + Delta-G solvation = -68.551889 kcal Electronic energy + Delta-G solvation = -32875.447209 eV Core-core repulsion = 27992.397618 eV Total energy + Delta-G solvation = -4883.049591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.21422 -45.85901 -45.50204 -42.95594 -39.85610 -37.43166 -34.97416 -34.59246 -32.69264 -31.40683 -31.35241 -28.42641 -27.92593 -27.56637 -24.52110 -23.86610 -22.31956 -21.84356 -21.60457 -20.48213 -19.29971 -18.21161 -17.25624 -16.81895 -16.66713 -16.51259 -16.29545 -16.13518 -15.69408 -15.08717 -14.86939 -14.72024 -14.22222 -14.00497 -13.61070 -13.46911 -13.10285 -13.01396 -12.88021 -12.70378 -12.45730 -12.32376 -12.25503 -12.17231 -11.88921 -11.85955 -11.72388 -11.38824 -11.31187 -11.12858 -11.00879 -10.83657 -10.74304 -10.36382 -10.17108 -10.08021 -9.65023 -9.57263 -9.05882 -8.69085 -8.54872 -8.09715 -6.19766 -4.43800 1.88086 2.51005 2.92032 3.18536 3.21901 3.26878 3.29054 3.72945 4.16933 4.20644 4.35753 4.50381 4.53082 4.63044 4.65765 4.72409 4.83153 4.87384 4.98065 4.98283 5.19948 5.27480 5.47050 5.52182 5.61793 5.70060 5.79856 5.91394 5.95152 5.98435 6.06355 6.25235 6.29085 6.39713 6.90773 6.93330 7.25473 7.40762 7.64377 7.68987 8.51867 8.62407 8.93945 9.15796 9.27050 10.71811 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.003986 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.264929 B = 7023.434288 C = 7892.652166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.471 5.471 3 C 0.143 3.857 4 N -0.297 5.297 5 N -0.276 5.276 6 C 0.178 3.822 7 C 0.248 3.752 8 H 0.087 0.913 9 C -0.120 4.120 10 C -0.127 4.127 11 C 0.099 3.901 12 N -0.626 5.626 13 C 0.723 3.277 14 O -0.580 6.580 15 N -0.720 5.720 16 C 0.264 3.736 17 H 0.083 0.917 18 C -0.552 4.552 19 H 0.076 0.924 20 C 0.065 3.935 21 N -0.840 5.840 22 Si 0.916 3.084 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.416 3.584 27 F -0.209 7.209 28 F -0.139 7.139 29 F -0.215 7.215 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.215 0.785 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.395 0.605 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 0.935 17.537 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.162 5.162 3 C -0.144 4.144 4 N -0.136 5.136 5 N -0.116 5.116 6 C -0.091 4.091 7 C 0.139 3.861 8 H 0.105 0.895 9 C -0.159 4.159 10 C -0.165 4.165 11 C -0.024 4.024 12 N -0.366 5.366 13 C 0.425 3.575 14 O -0.457 6.457 15 N -0.373 5.373 16 C 0.158 3.842 17 H 0.100 0.900 18 C -0.589 4.589 19 H 0.094 0.906 20 C -0.144 4.144 21 N -0.473 5.473 22 Si 0.742 3.258 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.359 3.641 27 F -0.191 7.191 28 F -0.120 7.120 29 F -0.197 7.197 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.229 0.771 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.279 1.739 16.764 18.359 hybrid contribution -0.685 -0.511 -0.543 1.013 sum -7.964 1.228 16.221 18.112 Atomic orbital electron populations 1.22083 0.75708 1.05656 1.03509 1.46069 1.09009 1.06675 1.54435 1.26337 0.87435 0.94721 1.05939 1.74238 1.18042 1.03528 1.17820 1.74200 1.16921 1.02788 1.17694 1.25099 0.87615 0.92217 1.04163 1.19451 0.95016 0.81589 0.90008 0.89509 1.22691 1.02853 0.96511 0.93866 1.22754 1.00339 0.96039 0.97383 1.22306 0.96024 0.91290 0.92795 1.47440 1.49137 1.35474 1.04515 1.15505 0.80860 0.81959 0.79128 1.90899 1.48369 1.34512 1.71905 1.45240 1.47125 1.36396 1.08502 1.19588 0.95270 0.93605 0.75711 0.89951 1.20825 1.51532 0.94644 0.91862 0.90568 1.25077 0.94604 0.97394 0.97304 1.70408 1.43577 1.26064 1.07232 0.86266 0.79242 0.82049 0.78233 1.19822 1.20895 1.19802 1.23114 0.82429 0.82766 0.75746 1.92986 1.45884 1.90916 1.89339 1.93393 1.96191 1.94885 1.27546 1.93095 1.91331 1.52474 1.82757 0.90140 0.89018 0.88989 0.76871 0.89679 0.89589 0.89419 0.90209 0.90236 0.90946 0.77134 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.01 59.84 0.66 1.22 16 2 N -0.47 -6.12 3.15 -122.69 -0.39 -6.50 16 3 C 0.14 1.97 12.74 -89.93 -1.15 0.83 16 4 N -0.30 -5.51 12.21 29.69 0.36 -5.15 16 5 N -0.28 -5.34 12.21 32.80 0.40 -4.94 16 6 C 0.18 2.82 5.99 -154.98 -0.93 1.89 16 7 C 0.25 3.29 3.23 -68.11 -0.22 3.07 16 8 H 0.09 1.04 6.94 -51.93 -0.36 0.68 16 9 C -0.12 -1.07 6.47 -24.90 -0.16 -1.24 16 10 C -0.13 -1.02 7.09 -24.58 -0.17 -1.19 16 11 C 0.10 1.18 6.57 -2.53 -0.02 1.16 16 12 N -0.63 -10.11 3.05 -170.01 -0.52 -10.63 16 13 C 0.72 15.44 7.81 -86.92 -0.68 14.76 16 14 O -0.58 -14.47 14.76 5.29 0.08 -14.40 16 15 N -0.72 -15.75 4.94 -59.82 -0.30 -16.04 16 16 C 0.26 6.86 2.21 -69.08 -0.15 6.71 16 17 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 18 C -0.55 -14.35 8.46 -34.44 -0.29 -14.64 16 19 H 0.08 1.85 7.74 -52.48 -0.41 1.45 16 20 C 0.07 1.72 5.20 -17.82 -0.09 1.63 16 21 N -0.84 -23.52 9.50 55.43 0.53 -22.99 16 22 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.42 11.41 2.81 37.16 0.10 11.52 16 27 F -0.21 -5.59 16.94 2.25 0.04 -5.55 16 28 F -0.14 -4.04 12.91 2.25 0.03 -4.01 16 29 F -0.21 -6.08 15.67 2.25 0.04 -6.04 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.73 7.07 -51.93 -0.37 0.36 16 33 H 0.21 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.39 7.55 7.02 -40.82 -0.29 7.26 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -37.85 352.51 -7.23 -45.08 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.69 Total: 4.87 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: -3.10 Total: 25.71 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: 0.09 Total: -66.25 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 9 Polarization: -15.71 SS G_CDS: 0.10 Total: -15.60 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.85 -7.23 -45.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.472 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds