Wall clock time and date at job start Wed Apr 1 2020 04:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.35503 * 126.97939 * 2 1 4 4 N 1.30526 * 107.30582 * 180.22545 * 3 2 1 5 5 N 1.28596 * 109.67210 * 359.77355 * 4 3 2 6 6 C 1.30523 * 109.67518 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.34773 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.99662 * 195.38075 * 7 6 5 9 9 C 1.54318 * 109.88307 * 74.28425 * 7 6 5 10 10 C 1.55160 * 102.94100 * 218.38965 * 9 7 6 11 11 C 1.54909 * 101.58106 * 35.50559 * 10 9 7 12 12 N 1.47026 * 109.87973 * 316.47471 * 7 6 5 13 13 C 1.34771 * 125.65100 * 298.09234 * 12 7 6 14 14 O 1.21587 * 120.00199 * 0.02562 * 13 12 7 15 15 N 1.34778 * 120.00238 * 179.97438 * 13 12 7 16 16 C 1.46495 * 120.00121 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47574 * 325.00548 * 16 15 13 18 18 C 1.50704 * 109.47350 * 205.00159 * 16 15 13 19 19 H 1.08005 * 119.99491 * 0.02562 * 18 16 15 20 20 C 1.37877 * 120.00408 * 179.97438 * 18 16 15 21 21 N 1.31512 * 119.99663 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00002 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47234 * 60.00390 * 22 20 18 24 24 H 1.48506 * 109.46858 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47202 * 300.00006 * 22 20 18 26 26 C 1.52998 * 109.46781 * 85.00523 * 16 15 13 27 27 F 1.39902 * 109.47381 * 60.00197 * 26 16 15 28 28 F 1.39907 * 109.47028 * 179.97438 * 26 16 15 29 29 F 1.39901 * 109.47189 * 299.99470 * 26 16 15 30 30 H 1.08997 * 109.47275 * 270.15326 * 1 2 3 31 31 H 1.09005 * 109.47638 * 30.15734 * 1 2 3 32 32 H 1.09004 * 109.47163 * 150.15224 * 1 2 3 33 33 H 1.07994 * 126.34741 * 359.97438 * 3 2 1 34 34 H 1.09003 * 110.72326 * 336.75342 * 9 7 6 35 35 H 1.08998 * 110.72230 * 100.03119 * 9 7 6 36 36 H 1.09006 * 111.00068 * 153.57567 * 10 9 7 37 37 H 1.08992 * 111.00480 * 277.38794 * 10 9 7 38 38 H 1.08996 * 110.36158 * 204.14752 * 11 10 9 39 39 H 1.09002 * 110.36956 * 81.83034 * 11 10 9 40 40 H 0.97000 * 119.99585 * 0.02562 * 15 13 12 41 41 H 0.97003 * 119.99993 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6430 -0.0049 5 7 3.5090 -0.6429 -0.0032 6 6 2.2800 -1.0823 0.0024 7 6 1.8476 -2.5260 0.0055 8 1 0.7935 -2.5999 -0.2617 9 6 2.0794 -3.1402 1.4021 10 6 2.5705 -4.5749 1.0735 11 6 3.4013 -4.3326 -0.2113 12 7 2.6605 -3.2935 -0.9493 13 6 2.7150 -3.0853 -2.2798 14 8 2.0540 -2.1980 -2.7839 15 7 3.5030 -3.8599 -3.0514 16 6 3.5618 -3.6340 -4.4976 17 1 2.5813 -3.3214 -4.8568 18 6 3.9668 -4.9101 -5.1895 19 1 4.1605 -5.8006 -4.6097 20 6 4.0889 -4.9413 -6.5625 21 7 3.8524 -3.8571 -7.2683 22 14 4.5902 -6.5232 -7.4199 23 1 3.5936 -7.5837 -7.1244 24 1 4.6498 -6.2941 -8.8860 25 1 5.9261 -6.9493 -6.9312 26 6 4.5885 -2.5411 -4.8017 27 9 5.8470 -2.9423 -4.3409 28 9 4.6451 -2.3257 -6.1829 29 9 4.2125 -1.3564 -4.1596 30 1 -0.3634 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5163 32 1 -0.3634 -0.8914 -0.5115 33 1 1.9701 2.1170 -0.0004 34 1 2.8446 -2.5856 1.9452 35 1 1.1489 -3.1716 1.9689 36 1 3.1963 -4.9669 1.8754 37 1 1.7298 -5.2400 0.8763 38 1 3.4621 -5.2469 -0.8016 39 1 4.3999 -3.9778 0.0439 40 1 4.0307 -4.5676 -2.6492 41 1 3.9380 -3.8790 -8.2343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932910134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:04 Heat of formation + Delta-G solvation = -94.436313 kcal Electronic energy + Delta-G solvation = -32876.569642 eV Core-core repulsion = 27992.397618 eV Total energy + Delta-G solvation = -4884.172024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.45165 -48.09525 -47.76395 -44.06497 -41.25752 -38.74997 -36.48828 -35.96280 -34.55911 -32.74879 -32.37739 -29.97666 -29.24660 -28.36412 -26.61332 -25.10731 -23.61401 -23.25052 -22.69405 -21.80862 -20.86544 -19.64504 -18.91850 -18.78503 -18.64067 -18.17139 -17.64352 -17.42955 -17.16141 -16.75933 -16.43470 -15.88814 -15.60555 -15.16096 -15.10572 -14.98848 -14.65615 -14.50863 -14.34474 -14.32744 -14.15698 -14.10583 -13.99137 -13.87935 -13.67213 -13.29754 -13.01217 -12.81701 -12.72164 -12.60787 -12.46600 -12.25551 -12.11210 -11.71129 -11.61551 -11.33939 -11.26800 -11.04260 -10.68757 -10.30362 -10.18726 -9.60877 -8.21924 -6.53715 0.81325 1.43646 1.48657 1.49995 1.58545 1.72735 1.95968 2.10767 2.36497 2.53450 2.93133 3.03399 3.22146 3.55157 3.71365 3.74830 3.76184 3.84543 3.86389 3.96188 4.13470 4.20671 4.39039 4.47108 4.54619 4.65075 4.73005 4.79733 4.86924 4.90991 4.98594 5.10888 5.19632 5.27647 5.36924 5.40508 5.53424 5.63257 5.99793 6.05865 6.51272 7.00544 7.16732 7.57586 7.78004 8.71102 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.003986 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.264929 B = 7023.434288 C = 7892.652166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.470 5.470 3 C 0.154 3.846 4 N -0.356 5.356 5 N -0.330 5.330 6 C 0.171 3.829 7 C 0.236 3.764 8 H 0.100 0.900 9 C -0.107 4.107 10 C -0.110 4.110 11 C 0.085 3.915 12 N -0.623 5.623 13 C 0.717 3.283 14 O -0.625 6.625 15 N -0.718 5.718 16 C 0.276 3.724 17 H 0.045 0.955 18 C -0.560 4.560 19 H 0.093 0.907 20 C 0.014 3.986 21 N -0.876 5.876 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.410 3.590 27 F -0.206 7.206 28 F -0.150 7.150 29 F -0.224 7.224 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.407 0.593 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.639 -0.934 19.549 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.160 5.160 3 C -0.134 4.134 4 N -0.195 5.195 5 N -0.170 5.170 6 C -0.100 4.100 7 C 0.128 3.872 8 H 0.118 0.882 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.037 4.037 12 N -0.361 5.361 13 C 0.419 3.581 14 O -0.505 6.505 15 N -0.371 5.371 16 C 0.168 3.832 17 H 0.063 0.937 18 C -0.597 4.597 19 H 0.111 0.889 20 C -0.191 4.191 21 N -0.510 5.510 22 Si 0.810 3.190 23 H -0.183 1.183 24 H -0.210 1.210 25 H -0.191 1.191 26 C 0.354 3.646 27 F -0.188 7.188 28 F -0.132 7.132 29 F -0.206 7.206 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.243 0.757 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.621 -0.160 18.867 20.744 hybrid contribution -0.328 0.174 -1.116 1.177 sum -8.949 0.013 17.750 19.879 Atomic orbital electron populations 1.22496 0.72539 1.06393 1.06178 1.46384 1.10852 1.05613 1.53201 1.27148 0.86475 0.96566 1.03252 1.74088 1.20961 1.03743 1.20689 1.74046 1.19370 1.03548 1.20068 1.25494 0.87396 0.93756 1.03333 1.20025 0.95057 0.80427 0.91649 0.88179 1.22727 1.04504 0.96215 0.91164 1.22774 1.00587 0.95780 0.95632 1.22655 0.96120 0.90304 0.94574 1.47479 1.49136 1.36360 1.03111 1.15694 0.80330 0.81283 0.80810 1.90849 1.49983 1.36189 1.73473 1.44997 1.47839 1.37154 1.07151 1.19156 0.92806 0.93148 0.78052 0.93702 1.21176 1.51245 0.94928 0.92360 0.88860 1.26055 0.94258 1.00771 0.98043 1.70542 1.44611 1.28428 1.07446 0.85155 0.79248 0.77897 0.76682 1.18254 1.20993 1.19109 1.23519 0.82996 0.82910 0.75182 1.92974 1.45735 1.90835 1.89249 1.93370 1.96290 1.94993 1.28504 1.93073 1.91449 1.53193 1.82874 0.86444 0.87152 0.89451 0.72544 0.90872 0.85651 0.86674 0.88317 0.89352 0.91882 0.75653 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 11.01 127.77 1.41 2.23 16 2 N -0.47 -11.70 3.15 -542.08 -1.71 -13.41 16 3 C 0.15 4.16 12.74 180.11 2.30 6.45 16 4 N -0.36 -13.59 12.21 -59.99 -0.73 -14.32 16 5 N -0.33 -13.19 12.21 -50.15 -0.61 -13.80 16 6 C 0.17 5.38 5.99 137.98 0.83 6.20 16 7 C 0.24 5.95 3.23 44.59 0.14 6.09 16 8 H 0.10 2.23 6.94 -2.39 -0.02 2.21 16 9 C -0.11 -1.59 6.47 31.78 0.21 -1.39 16 10 C -0.11 -1.37 7.09 31.99 0.23 -1.14 16 11 C 0.09 1.90 6.57 86.85 0.57 2.48 16 12 N -0.62 -19.88 3.05 -810.05 -2.47 -22.35 16 13 C 0.72 31.27 7.81 179.06 1.40 32.67 16 14 O -0.62 -32.32 14.76 -3.99 -0.06 -32.38 16 15 N -0.72 -31.98 4.94 -461.42 -2.28 -34.26 16 16 C 0.28 14.76 2.21 44.25 0.10 14.86 16 17 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 18 C -0.56 -29.21 8.46 25.60 0.22 -29.00 16 19 H 0.09 4.43 7.74 -2.91 -0.02 4.41 16 20 C 0.01 0.73 5.20 84.65 0.44 1.17 16 21 N -0.88 -50.03 9.50 21.45 0.20 -49.83 16 22 Si 0.99 41.07 29.54 68.60 2.03 43.10 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 C 0.41 23.28 2.81 71.98 0.20 23.48 16 27 F -0.21 -11.22 16.94 44.97 0.76 -10.46 16 28 F -0.15 -9.04 12.91 44.97 0.58 -8.46 16 29 F -0.22 -13.24 15.67 44.97 0.70 -12.53 16 30 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.23 7.07 -2.39 -0.02 1.21 16 33 H 0.26 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.07 1.31 7.84 -2.39 -0.02 1.29 16 35 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.79 7.30 -2.39 -0.02 1.78 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.41 15.60 7.02 -92.71 -0.65 14.94 16 41 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -87.88 352.51 4.90 -82.98 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.45 Total: 21.61 kcal Atomic # 6 Polarization: 56.08 SS G_CDS: 8.03 Total: 64.11 kcal Atomic # 7 Polarization: -140.37 SS G_CDS: -7.60 Total: -147.97 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.06 Total: -32.38 kcal Atomic # 9 Polarization: -33.50 SS G_CDS: 2.05 Total: -31.46 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -87.88 4.90 -82.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932910134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.452 kcal (2) G-P(sol) polarization free energy of solvation -87.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds