Wall clock time and date at job start Wed Apr 1 2020 04:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00510 * 2 1 4 4 H 1.07996 * 120.00197 * 201.71902 * 3 2 1 5 5 C 1.38814 * 119.99440 * 21.71426 * 3 2 1 6 6 N 1.31613 * 120.00170 * 13.67324 * 5 3 2 7 7 Si 1.86803 * 119.99682 * 193.67334 * 5 3 2 8 8 H 1.48506 * 109.47122 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47233 * 119.99855 * 7 5 3 10 10 H 1.48502 * 109.46882 * 240.00029 * 7 5 3 11 11 C 1.46508 * 120.00158 * 179.97438 * 2 1 3 12 12 H 1.08990 * 110.64207 * 176.85854 * 11 2 1 13 13 C 1.55153 * 110.87089 * 53.60974 * 11 2 1 14 14 C 1.55128 * 101.48620 * 205.90332 * 13 11 2 15 15 N 1.47423 * 104.72519 * 37.29201 * 14 13 11 16 16 C 1.34773 * 125.64771 * 155.81590 * 15 14 13 17 17 O 1.21283 * 120.00263 * 179.69791 * 16 15 14 18 18 C 1.50702 * 120.00082 * 359.69661 * 16 15 14 19 19 C 1.50702 * 109.47034 * 179.97438 * 18 16 15 20 20 N 1.29735 * 126.29539 * 269.68963 * 19 18 16 21 21 O 1.41346 * 109.74207 * 180.26050 * 20 19 18 22 22 C 1.34903 * 109.32870 * 0.02562 * 21 20 19 23 23 C 1.38956 * 133.33852 * 179.97438 * 22 21 20 24 24 C 1.37755 * 119.96677 * 180.02562 * 23 22 21 25 25 C 1.38992 * 120.58821 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.84368 * 179.97438 * 25 24 23 27 27 C 1.37800 * 120.31394 * 0.02562 * 25 24 23 28 28 C 1.39709 * 119.65642 * 359.97438 * 27 25 24 29 29 C 1.47020 * 108.70156 * 335.56086 * 15 14 13 30 30 H 1.08995 * 109.47143 * 274.46083 * 1 2 3 31 31 H 1.09001 * 109.47124 * 34.46409 * 1 2 3 32 32 H 1.09006 * 109.47156 * 154.46141 * 1 2 3 33 33 H 0.97005 * 119.99788 * 179.97438 * 6 5 3 34 34 H 1.09006 * 111.00669 * 324.14234 * 13 11 2 35 35 H 1.08999 * 111.00521 * 87.95388 * 13 11 2 36 36 H 1.09006 * 110.49516 * 278.45143 * 14 13 11 37 37 H 1.08999 * 110.34447 * 156.06358 * 14 13 11 38 38 H 1.08997 * 109.46878 * 60.00086 * 18 16 15 39 39 H 1.08997 * 109.47107 * 300.00015 * 18 16 15 40 40 H 1.08001 * 120.01125 * 359.97419 * 23 22 21 41 41 H 1.08007 * 119.70533 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.16677 * 180.02562 * 27 25 24 43 43 H 1.08999 * 109.88769 * 120.70019 * 29 15 14 44 44 H 1.09004 * 109.87592 * 241.86694 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1722 1.2190 -0.3461 5 6 1.5295 2.3454 0.4448 6 7 0.3967 2.2718 1.1108 7 14 2.3028 4.0101 0.0980 8 1 3.5643 3.8212 -0.6625 9 1 1.3624 4.8359 -0.7014 10 1 2.5962 4.6966 1.3817 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7291 -2.1781 -1.1660 14 6 2.0620 -3.5881 -0.6116 15 7 1.7543 -3.5070 0.8279 16 6 1.4460 -4.5490 1.6251 17 8 1.2152 -4.3650 2.8015 18 6 1.3881 -5.9427 1.0549 19 6 1.0257 -6.9172 2.1459 20 7 1.8551 -7.5498 2.9172 21 8 1.1390 -8.3780 3.8111 22 6 -0.1834 -8.2482 3.5779 23 6 -1.3134 -8.8185 4.1514 24 6 -2.5655 -8.4814 3.6866 25 6 -2.7124 -7.5722 2.6456 26 9 -3.9477 -7.2528 2.2012 27 6 -1.6041 -6.9959 2.0639 28 6 -0.3286 -7.3294 2.5261 29 6 1.8454 -2.1019 1.2510 30 1 -0.3633 0.0799 1.0245 31 1 -0.3633 0.8473 -0.5815 32 1 -0.3634 -0.9273 -0.4431 33 1 -0.0364 3.0821 1.4219 34 1 0.6592 -2.0667 -1.3429 35 1 2.2964 -1.9724 -2.0738 36 1 3.1170 -3.8179 -0.7616 37 1 1.4370 -4.3412 -1.0914 38 1 2.3614 -6.2067 0.6411 39 1 0.6356 -5.9821 0.2673 40 1 -1.2098 -9.5263 4.9605 41 1 -3.4410 -8.9269 4.1357 42 1 -1.7211 -6.2894 1.2554 43 1 0.8885 -1.7743 1.6574 44 1 2.6272 -1.9911 2.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972529417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:48 Heat of formation + Delta-G solvation = 22.584886 kcal Electronic energy + Delta-G solvation = -29803.341115 eV Core-core repulsion = 25446.180289 eV Total energy + Delta-G solvation = -4357.160825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.22115 -42.13689 -39.90409 -37.84071 -37.60989 -34.90348 -34.82658 -31.88451 -31.16015 -30.30162 -29.95775 -29.53144 -27.68483 -26.09807 -24.11662 -23.69218 -23.08236 -22.47870 -21.18466 -19.35930 -19.12429 -18.58130 -17.66284 -17.22890 -17.11176 -16.91627 -16.29265 -16.09518 -15.71929 -15.47215 -15.22534 -14.94532 -14.63067 -14.25084 -13.95736 -13.64281 -13.50897 -13.36217 -13.20970 -12.96597 -12.61975 -12.43461 -12.23753 -12.22127 -11.95826 -11.86472 -11.62866 -11.50259 -11.38773 -10.98809 -10.86207 -10.62941 -10.51172 -10.32442 -9.96523 -9.88742 -9.82394 -9.45770 -8.82570 -8.63078 -8.45007 -6.89264 -5.81462 -3.28283 0.11710 0.66546 1.58443 2.11202 2.60275 2.91287 3.11741 3.33474 3.40833 3.42764 3.52823 3.68921 3.95143 4.07129 4.38354 4.42495 4.45900 4.64628 4.79518 4.81808 4.88656 4.97266 5.16693 5.18846 5.25676 5.37355 5.42080 5.49253 5.51657 5.54912 5.61968 5.70390 5.81229 5.90764 6.17444 6.25233 6.27471 6.40576 6.57073 6.75314 6.78793 6.85540 7.28512 7.62598 7.65410 7.73600 8.16418 8.29182 9.12951 9.75400 10.23310 11.23135 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002315 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.700739 B =12091.408655 C =12828.214262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.072 0.928 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.097 3.903 15 N -0.609 5.609 16 C 0.528 3.472 17 O -0.534 6.534 18 C -0.073 4.073 19 C 0.159 3.841 20 N -0.267 5.267 21 O -0.086 6.086 22 C 0.076 3.924 23 C -0.095 4.095 24 C -0.094 4.094 25 C 0.072 3.928 26 F -0.132 7.132 27 C -0.071 4.071 28 C -0.157 4.157 29 C 0.087 3.913 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.074 0.926 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 -23.373 -2.243 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.026 4.026 15 N -0.343 5.343 16 C 0.313 3.687 17 O -0.411 6.411 18 C -0.114 4.114 19 C -0.023 4.023 20 N -0.009 5.009 21 O -0.096 6.096 22 C 0.022 3.978 23 C -0.115 4.115 24 C -0.114 4.114 25 C 0.052 3.948 26 F -0.111 7.111 27 C -0.092 4.092 28 C -0.160 4.160 29 C -0.038 4.038 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.093 0.907 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.673 -23.414 -1.102 23.592 hybrid contribution -0.625 1.205 -0.312 1.393 sum -3.299 -22.209 -1.414 22.497 Atomic orbital electron populations 1.20815 0.82366 0.95759 0.99532 1.43952 1.01940 0.99901 1.84742 1.19267 0.97901 0.84901 1.37100 0.91033 1.25049 0.97784 0.98668 0.97967 1.70090 1.18801 1.27150 1.38667 0.86156 0.78548 0.84048 0.77578 1.20240 1.21548 1.21670 1.21361 0.96497 0.85970 0.89979 0.90268 1.23385 1.02932 0.93009 1.00003 1.22465 1.00342 0.99443 0.80385 1.48515 1.67684 1.07899 1.10176 1.19599 0.78065 0.84860 0.86144 1.90779 1.49405 1.85036 1.15838 1.20283 1.06272 0.90015 0.94855 1.23735 0.89844 0.94016 0.94697 1.79896 1.13828 1.05488 1.01681 1.89194 1.13287 1.56711 1.50448 1.20255 0.86615 0.95961 0.94947 1.19823 0.87484 1.02282 1.01874 1.21092 0.98107 0.96760 0.95485 1.17270 0.79916 0.99945 0.97630 1.91544 1.39304 1.91745 1.88493 1.20593 0.89239 0.99043 1.00299 1.20328 0.93410 1.02023 1.00285 1.23022 1.02527 0.77980 1.00235 0.95156 0.93549 0.97947 0.93612 0.90236 0.90224 0.91180 0.91140 0.85862 0.85767 0.83178 0.82907 0.83463 0.90739 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 7.82 59.84 0.47 4.20 16 2 N -0.59 -13.72 2.93 -171.39 -0.50 -14.22 16 3 C -0.26 -6.85 9.63 -15.06 -0.14 -7.00 16 4 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -25.72 10.68 55.49 0.59 -25.13 16 7 Si 0.91 21.24 29.58 -169.99 -5.03 16.21 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 C 0.17 3.19 3.43 -66.09 -0.23 2.96 16 12 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 13 C -0.15 -2.14 6.61 -24.47 -0.16 -2.31 16 14 C 0.10 1.06 6.70 -2.41 -0.02 1.04 16 15 N -0.61 -8.96 3.32 -170.38 -0.57 -9.52 16 16 C 0.53 7.92 7.84 -10.99 -0.09 7.83 16 17 O -0.53 -10.56 16.36 5.55 0.09 -10.47 16 18 C -0.07 -0.74 5.30 -29.03 -0.15 -0.90 16 19 C 0.16 2.01 5.96 -80.11 -0.48 1.53 16 20 N -0.27 -3.83 12.81 34.91 0.45 -3.39 16 21 O -0.09 -1.18 12.07 7.45 0.09 -1.09 16 22 C 0.08 0.89 7.48 -38.50 -0.29 0.60 16 23 C -0.10 -0.79 10.06 -39.49 -0.40 -1.18 16 24 C -0.09 -0.72 9.99 -39.48 -0.39 -1.11 16 25 C 0.07 0.69 7.29 -39.46 -0.29 0.40 16 26 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 27 C -0.07 -0.73 10.07 -39.19 -0.39 -1.12 16 28 C -0.16 -1.86 6.32 -105.16 -0.66 -2.53 16 29 C 0.09 1.60 6.51 -3.06 -0.02 1.58 16 30 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 31 H 0.05 1.17 7.23 -51.93 -0.38 0.80 16 32 H 0.00 0.04 6.04 -51.93 -0.31 -0.27 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.19 6.07 -51.93 -0.32 0.88 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 7.48 -51.93 -0.39 0.17 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 0.83 7.85 -51.93 -0.41 0.42 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.15 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.07 1.61 7.11 -51.93 -0.37 1.24 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -33.63 372.32 -8.03 -41.66 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.47 Total: -2.41 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -3.33 Total: 4.04 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.03 Total: -52.26 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.18 Total: -11.56 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.63 -8.03 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972529417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.246 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds