Wall clock time and date at job start Wed Apr 1 2020 04:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00510 * 2 1 4 4 H 1.07996 * 120.00197 * 201.71902 * 3 2 1 5 5 C 1.38814 * 119.99440 * 21.71426 * 3 2 1 6 6 N 1.31613 * 120.00170 * 13.67324 * 5 3 2 7 7 Si 1.86803 * 119.99682 * 193.67334 * 5 3 2 8 8 H 1.48506 * 109.47122 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47233 * 119.99855 * 7 5 3 10 10 H 1.48502 * 109.46882 * 240.00029 * 7 5 3 11 11 C 1.46508 * 120.00158 * 179.97438 * 2 1 3 12 12 H 1.08990 * 110.64207 * 176.85854 * 11 2 1 13 13 C 1.55153 * 110.87089 * 53.60974 * 11 2 1 14 14 C 1.55128 * 101.48620 * 205.90332 * 13 11 2 15 15 N 1.47423 * 104.72519 * 37.29201 * 14 13 11 16 16 C 1.34773 * 125.64771 * 155.81590 * 15 14 13 17 17 O 1.21283 * 120.00263 * 179.69791 * 16 15 14 18 18 C 1.50702 * 120.00082 * 359.69661 * 16 15 14 19 19 C 1.50702 * 109.47034 * 179.97438 * 18 16 15 20 20 N 1.29735 * 126.29539 * 269.68963 * 19 18 16 21 21 O 1.41346 * 109.74207 * 180.26050 * 20 19 18 22 22 C 1.34903 * 109.32870 * 0.02562 * 21 20 19 23 23 C 1.38956 * 133.33852 * 179.97438 * 22 21 20 24 24 C 1.37755 * 119.96677 * 180.02562 * 23 22 21 25 25 C 1.38992 * 120.58821 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.84368 * 179.97438 * 25 24 23 27 27 C 1.37800 * 120.31394 * 0.02562 * 25 24 23 28 28 C 1.39709 * 119.65642 * 359.97438 * 27 25 24 29 29 C 1.47020 * 108.70156 * 335.56086 * 15 14 13 30 30 H 1.08995 * 109.47143 * 274.46083 * 1 2 3 31 31 H 1.09001 * 109.47124 * 34.46409 * 1 2 3 32 32 H 1.09006 * 109.47156 * 154.46141 * 1 2 3 33 33 H 0.97005 * 119.99788 * 179.97438 * 6 5 3 34 34 H 1.09006 * 111.00669 * 324.14234 * 13 11 2 35 35 H 1.08999 * 111.00521 * 87.95388 * 13 11 2 36 36 H 1.09006 * 110.49516 * 278.45143 * 14 13 11 37 37 H 1.08999 * 110.34447 * 156.06358 * 14 13 11 38 38 H 1.08997 * 109.46878 * 60.00086 * 18 16 15 39 39 H 1.08997 * 109.47107 * 300.00015 * 18 16 15 40 40 H 1.08001 * 120.01125 * 359.97419 * 23 22 21 41 41 H 1.08007 * 119.70533 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.16677 * 180.02562 * 27 25 24 43 43 H 1.08999 * 109.88769 * 120.70019 * 29 15 14 44 44 H 1.09004 * 109.87592 * 241.86694 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1722 1.2190 -0.3461 5 6 1.5295 2.3454 0.4448 6 7 0.3967 2.2718 1.1108 7 14 2.3028 4.0101 0.0980 8 1 3.5643 3.8212 -0.6625 9 1 1.3624 4.8359 -0.7014 10 1 2.5962 4.6966 1.3817 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7291 -2.1781 -1.1660 14 6 2.0620 -3.5881 -0.6116 15 7 1.7543 -3.5070 0.8279 16 6 1.4460 -4.5490 1.6251 17 8 1.2152 -4.3650 2.8015 18 6 1.3881 -5.9427 1.0549 19 6 1.0257 -6.9172 2.1459 20 7 1.8551 -7.5498 2.9172 21 8 1.1390 -8.3780 3.8111 22 6 -0.1834 -8.2482 3.5779 23 6 -1.3134 -8.8185 4.1514 24 6 -2.5655 -8.4814 3.6866 25 6 -2.7124 -7.5722 2.6456 26 9 -3.9477 -7.2528 2.2012 27 6 -1.6041 -6.9959 2.0639 28 6 -0.3286 -7.3294 2.5261 29 6 1.8454 -2.1019 1.2510 30 1 -0.3633 0.0799 1.0245 31 1 -0.3633 0.8473 -0.5815 32 1 -0.3634 -0.9273 -0.4431 33 1 -0.0364 3.0821 1.4219 34 1 0.6592 -2.0667 -1.3429 35 1 2.2964 -1.9724 -2.0738 36 1 3.1170 -3.8179 -0.7616 37 1 1.4370 -4.3412 -1.0914 38 1 2.3614 -6.2067 0.6411 39 1 0.6356 -5.9821 0.2673 40 1 -1.2098 -9.5263 4.9605 41 1 -3.4410 -8.9269 4.1357 42 1 -1.7211 -6.2894 1.2554 43 1 0.8885 -1.7743 1.6574 44 1 2.6272 -1.9911 2.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972529417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:47 Heat of formation + Delta-G solvation = 1.184119 kcal Electronic energy + Delta-G solvation = -29804.269122 eV Core-core repulsion = 25446.180289 eV Total energy + Delta-G solvation = -4358.088832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.97648 -42.98497 -41.13068 -39.02023 -38.57025 -36.57456 -35.76542 -33.55874 -31.96816 -31.55545 -30.91054 -30.54222 -29.04436 -28.06200 -25.34804 -24.72969 -23.89866 -23.86524 -22.15197 -20.86044 -20.21212 -19.36678 -18.96353 -18.48699 -18.31583 -17.68620 -17.48361 -17.18902 -16.75515 -16.56856 -16.42191 -16.10516 -15.71163 -15.37394 -15.08972 -14.94988 -14.63072 -14.53300 -14.31656 -14.16082 -13.93826 -13.68770 -13.46655 -13.25139 -13.11953 -12.99794 -12.79600 -12.69209 -12.51717 -12.39485 -12.37885 -12.21780 -12.17506 -12.05849 -11.79280 -11.38776 -11.09456 -10.65165 -10.21457 -9.70622 -9.60276 -8.83732 -7.84781 -5.33410 -0.64584 -0.09531 0.72726 1.26381 1.46659 1.46860 1.48229 1.58415 1.91845 2.27310 2.50638 2.71568 2.91164 3.19355 3.27681 3.37262 3.42461 3.58645 3.83272 3.85710 3.86649 4.06368 4.11736 4.17148 4.25913 4.30657 4.39206 4.47693 4.49080 4.69985 4.73183 4.81314 4.82233 4.86414 4.91173 4.93149 5.05609 5.19554 5.22166 5.33670 5.46403 5.47305 5.64391 5.70942 5.99504 6.30082 6.48179 7.00197 7.12340 7.83764 8.27076 9.18441 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.002315 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.700739 B =12091.408655 C =12828.214262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.263 4.263 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.292 1.292 10 H -0.298 1.298 11 C 0.163 3.837 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.100 3.900 15 N -0.607 5.607 16 C 0.525 3.475 17 O -0.593 6.593 18 C -0.062 4.062 19 C 0.157 3.843 20 N -0.302 5.302 21 O -0.105 6.105 22 C 0.053 3.947 23 C -0.090 4.090 24 C -0.080 4.080 25 C 0.064 3.936 26 F -0.136 7.136 27 C -0.079 4.079 28 C -0.177 4.177 29 C 0.098 3.902 30 H -0.008 1.008 31 H 0.019 0.981 32 H 0.037 0.963 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.189 0.811 42 H 0.160 0.840 43 H 0.034 0.966 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 -25.804 -4.454 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.185 1.185 9 H -0.218 1.218 10 H -0.225 1.225 11 C 0.055 3.945 12 H 0.100 0.900 13 C -0.180 4.180 14 C -0.021 4.021 15 N -0.340 5.340 16 C 0.313 3.687 17 O -0.473 6.473 18 C -0.102 4.102 19 C -0.025 4.025 20 N -0.045 5.045 21 O -0.116 6.116 22 C 0.000 4.000 23 C -0.109 4.109 24 C -0.100 4.100 25 C 0.044 3.956 26 F -0.115 7.115 27 C -0.100 4.100 28 C -0.181 4.181 29 C -0.027 4.027 30 H 0.010 0.990 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.198 0.802 41 H 0.206 0.794 42 H 0.178 0.822 43 H 0.053 0.947 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.489 -25.903 -3.369 26.239 hybrid contribution -0.715 1.873 0.419 2.048 sum -3.203 -24.030 -2.950 24.421 Atomic orbital electron populations 1.20463 0.82856 0.96231 0.96978 1.44149 1.02001 1.01133 1.85018 1.19669 0.98150 0.86046 1.35410 0.90247 1.25836 0.98582 1.02075 0.98608 1.70274 1.20478 1.27335 1.40592 0.85158 0.78193 0.79902 0.76900 1.18500 1.21842 1.22544 1.21604 0.96313 0.84736 0.91870 0.89996 1.23262 1.02546 0.93434 0.98741 1.22790 1.03254 0.98616 0.77488 1.48528 1.67402 1.06028 1.12007 1.20433 0.76422 0.86460 0.85387 1.90759 1.51847 1.86106 1.18637 1.20437 1.09572 0.85544 0.94648 1.24161 0.90099 0.93660 0.94548 1.79817 1.15091 1.06845 1.02723 1.89122 1.14460 1.57153 1.50840 1.20788 0.86533 0.96928 0.95788 1.20258 0.86535 1.02091 1.02063 1.21493 0.98982 0.95329 0.94154 1.17504 0.79568 1.00351 0.98153 1.91538 1.39451 1.91852 1.88629 1.20754 0.88889 0.99427 1.00890 1.20487 0.93761 1.02799 1.01046 1.22518 0.99520 0.81020 0.99689 0.99015 0.96198 0.94488 0.94391 0.91087 0.87973 0.88249 0.86343 0.82607 0.81401 0.80236 0.79395 0.82220 0.94732 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 7.82 127.77 1.00 9.65 16 2 N -0.60 -28.54 2.93 -696.16 -2.04 -30.58 16 3 C -0.26 -13.84 9.63 84.03 0.81 -13.03 16 4 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 5 C -0.06 -3.10 5.08 84.86 0.43 -2.66 16 6 N -0.94 -55.86 10.68 21.65 0.23 -55.63 16 7 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 8 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 11 C 0.16 5.90 3.43 46.18 0.16 6.06 16 12 H 0.08 2.90 7.92 -2.39 -0.02 2.88 16 13 C -0.14 -3.44 6.61 32.06 0.21 -3.23 16 14 C 0.10 1.69 6.70 86.93 0.58 2.28 16 15 N -0.61 -16.68 3.32 -811.35 -2.70 -19.38 16 16 C 0.52 15.03 7.84 87.66 0.69 15.72 16 17 O -0.59 -24.03 16.36 -3.04 -0.05 -24.08 16 18 C -0.06 -1.06 5.30 29.10 0.15 -0.91 16 19 C 0.16 3.78 5.96 45.05 0.27 4.04 16 20 N -0.30 -8.64 12.81 -43.46 -0.56 -9.20 16 21 O -0.11 -2.93 12.07 29.05 0.35 -2.58 16 22 C 0.05 1.21 7.48 22.97 0.17 1.38 16 23 C -0.09 -1.31 10.06 22.33 0.22 -1.09 16 24 C -0.08 -1.00 9.99 22.34 0.22 -0.77 16 25 C 0.06 1.09 7.29 22.35 0.16 1.25 16 26 F -0.14 -2.50 17.26 44.97 0.78 -1.72 16 27 C -0.08 -1.50 10.07 22.52 0.23 -1.27 16 28 C -0.18 -4.05 6.32 -20.21 -0.13 -4.18 16 29 C 0.10 3.71 6.51 86.73 0.56 4.28 16 30 H -0.01 -0.47 7.33 -2.39 -0.02 -0.49 16 31 H 0.02 1.02 7.23 -2.39 -0.02 1.01 16 32 H 0.04 1.48 6.04 -2.38 -0.01 1.47 16 33 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 34 H 0.07 1.89 6.07 -2.38 -0.01 1.88 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 1.24 8.14 -2.38 -0.02 1.23 16 37 H 0.12 1.02 7.48 -2.39 -0.02 1.00 16 38 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.17 1.36 7.85 -2.39 -0.02 1.34 16 40 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.03 1.57 7.11 -2.39 -0.02 1.55 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -80.81 372.32 4.83 -75.97 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.04 Total: 3.21 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.75 Total: 17.52 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.07 Total: -114.78 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: 0.30 Total: -26.66 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -80.81 4.83 -75.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972529417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.159 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds