Wall clock time and date at job start Wed Apr 1 2020 04:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00243 * 2 1 4 4 H 1.48499 * 109.47217 * 240.00042 * 3 2 1 5 5 H 1.48493 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46872 * 120.00252 * 3 2 1 7 7 C 1.38818 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00482 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.49291 * 127.10208 * 359.97018 * 9 7 2 11 11 C 1.56983 * 106.43587 * 171.66598 * 10 9 7 12 12 C 1.52131 * 100.46356 * 336.09535 * 11 10 9 13 13 N 1.46496 * 111.08453 * 286.47049 * 12 11 10 14 14 C 1.34777 * 120.00258 * 288.30892 * 13 12 11 15 15 O 1.21615 * 119.99846 * 359.97438 * 14 13 12 16 16 C 1.47256 * 119.99881 * 179.97438 * 14 13 12 17 17 N 1.29764 * 125.52747 * 359.69092 * 16 14 13 18 18 C 1.32593 * 116.75567 * 179.77133 * 17 16 14 19 19 C 1.34629 * 114.30854 * 0.54722 * 18 17 16 20 20 S 1.71626 * 109.59870 * 359.68721 * 19 18 17 21 21 C 1.51943 * 110.68854 * 179.64891 * 19 18 17 22 22 C 1.54237 * 104.84702 * 342.60826 * 21 19 18 23 23 C 1.52801 * 136.15985 * 180.19905 * 18 17 16 24 24 C 1.51229 * 122.55257 * 151.79879 * 12 11 10 25 25 C 1.55049 * 104.91259 * 219.09655 * 24 12 11 26 26 C 1.56289 * 105.92080 * 6.67433 * 25 24 12 27 27 C 1.42704 * 127.10029 * 180.02562 * 9 7 2 28 28 H 1.09001 * 108.18750 * 103.42757 * 27 9 7 29 29 H 0.96999 * 119.99710 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.05067 * 290.62243 * 10 9 7 31 31 H 1.09009 * 110.05150 * 52.09775 * 10 9 7 32 32 H 1.09001 * 110.94397 * 218.47687 * 11 10 9 33 33 H 1.09000 * 111.67767 * 94.01662 * 11 10 9 34 34 H 0.96999 * 119.99694 * 108.30282 * 13 12 11 35 35 H 1.09001 * 110.36501 * 101.44203 * 21 19 18 36 36 H 1.08994 * 110.36923 * 223.75903 * 21 19 18 37 37 H 1.08995 * 110.94925 * 268.38533 * 22 21 19 38 38 H 1.08996 * 110.98575 * 144.67566 * 22 21 19 39 39 H 1.09003 * 110.31360 * 316.82272 * 23 18 17 40 40 H 1.08993 * 110.31689 * 79.00153 * 23 18 17 41 41 H 1.08999 * 110.40930 * 337.32199 * 24 12 11 42 42 H 1.08993 * 110.41169 * 99.76185 * 24 12 11 43 43 H 1.08999 * 109.85082 * 247.72617 * 25 24 12 44 44 H 1.09004 * 110.54513 * 125.98211 * 25 24 12 45 45 H 1.09001 * 110.96779 * 266.52119 * 26 25 24 46 46 H 1.08998 * 110.97413 * 142.75711 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1559 -2.5726 -0.0017 11 6 -0.4126 -4.1057 -0.2213 12 6 0.8804 -4.5055 -0.9161 13 7 0.9081 -4.0199 -2.2979 14 6 0.1154 -4.5883 -3.2280 15 8 -0.6226 -5.5045 -2.9202 16 6 0.1429 -4.0997 -4.6169 17 7 0.8815 -3.1294 -5.0604 18 6 0.7707 -2.8356 -6.3486 19 6 -0.1179 -3.5956 -7.0159 20 16 -0.8253 -4.7317 -5.9415 21 6 -0.1851 -3.1849 -8.4773 22 6 0.4551 -1.7823 -8.5234 23 6 1.4005 -1.8257 -7.3069 24 6 1.4596 -5.8991 -0.8180 25 6 2.9914 -5.6875 -0.7052 26 6 3.2024 -4.1447 -0.5712 27 6 1.8808 -3.7027 -0.0018 28 1 1.7908 -4.1101 1.0052 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5713 -2.2619 0.9569 31 1 -0.6046 -1.9938 -0.8091 32 1 -1.2737 -4.2676 -0.8696 33 1 -0.5302 -4.6339 0.7249 34 1 1.4970 -3.2893 -2.5435 35 1 0.3832 -3.8815 -9.0936 36 1 -1.2215 -3.1400 -8.8115 37 1 -0.2997 -1.0053 -8.4030 38 1 1.0152 -1.6391 -9.4474 39 1 1.4583 -0.8436 -6.8374 40 1 2.3926 -2.1597 -7.6103 41 1 1.0898 -6.4024 0.0752 42 1 1.2145 -6.4762 -1.7096 43 1 3.4834 -6.0572 -1.6049 44 1 3.3844 -6.1980 0.1741 45 1 3.3797 -3.6892 -1.5455 46 1 4.0178 -3.9207 0.1166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991841396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:34 Heat of formation + Delta-G solvation = 54.992294 kcal Electronic energy + Delta-G solvation = -29227.979251 eV Core-core repulsion = 25438.436892 eV Total energy + Delta-G solvation = -3789.542359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.66799 -40.15912 -38.10729 -35.97218 -34.42664 -33.04202 -31.68509 -30.00095 -28.82451 -28.43380 -26.93988 -25.89980 -24.94274 -24.02594 -22.08635 -20.89779 -20.46576 -19.72109 -19.38519 -18.52550 -18.03222 -16.79637 -16.45835 -16.07663 -15.72554 -15.04271 -14.62981 -14.49522 -14.23249 -14.05720 -13.91098 -13.79694 -13.36434 -13.18219 -13.04395 -12.63044 -12.31936 -12.22639 -11.90729 -11.47373 -11.40738 -11.39496 -11.23908 -11.21018 -10.99486 -10.89672 -10.79909 -10.52523 -10.31219 -10.05838 -10.03891 -9.93969 -9.68427 -9.61881 -9.43148 -9.20818 -8.67947 -8.64947 -8.43609 -6.85959 -5.73194 -3.07849 0.34286 1.06389 1.75216 2.37028 3.37006 3.40061 3.44564 3.45466 3.48688 3.90717 4.25296 4.46405 4.56328 4.63089 4.70488 5.01432 5.18924 5.24628 5.26471 5.31622 5.40066 5.49431 5.50170 5.60692 5.61508 5.71994 5.76735 5.81110 5.88377 5.94657 5.99426 6.07485 6.15097 6.23865 6.30986 6.37985 6.42889 6.50284 6.64763 6.82354 6.90302 7.10954 7.51369 7.52113 7.60854 7.78593 7.99005 8.20668 8.52633 9.14280 9.81011 10.49213 11.39143 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.004366 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.564365 B = 6411.533600 C = 8229.366042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.140 4.140 12 C 0.129 3.871 13 N -0.658 5.658 14 C 0.596 3.404 15 O -0.538 6.538 16 C 0.009 3.991 17 N -0.413 5.413 18 C 0.039 3.961 19 C -0.277 4.277 20 S 0.237 5.763 21 C -0.035 4.035 22 C -0.116 4.116 23 C -0.042 4.042 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.117 4.117 27 C 0.161 3.839 28 H 0.026 0.974 29 H 0.253 0.747 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.415 0.585 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 -9.325 -14.941 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.179 4.179 12 C 0.041 3.959 13 N -0.308 5.308 14 C 0.376 3.624 15 O -0.416 6.416 16 C -0.269 4.269 17 N -0.130 5.130 18 C -0.097 4.097 19 C -0.400 4.400 20 S 0.495 5.505 21 C -0.074 4.074 22 C -0.156 4.156 23 C -0.082 4.082 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.155 4.155 27 C 0.050 3.950 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.253 0.747 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.245 -10.266 -14.315 17.617 hybrid contribution 1.183 2.054 -0.416 2.406 sum 1.427 -8.212 -14.731 16.925 Atomic orbital electron populations 1.69899 1.04921 1.25248 1.56433 1.24779 0.95593 0.97616 1.01917 0.86248 0.78519 0.83382 0.77892 1.21136 1.21675 1.21178 1.18955 0.90242 0.82217 1.44514 0.90324 1.43669 1.01717 0.99263 1.86083 1.22171 0.83240 0.88318 1.00840 1.22940 0.96119 0.99628 0.99183 1.21680 0.99120 0.94228 0.80911 1.45516 1.41026 1.36417 1.07860 1.16660 0.81182 0.82648 0.81863 1.90801 1.40848 1.29684 1.80268 1.27553 1.00631 0.98674 1.00004 1.65934 1.21256 1.12449 1.13322 1.21703 0.99113 1.00767 0.88089 1.26915 1.04962 1.03892 1.04220 1.83701 1.38035 1.30355 0.98453 1.20677 1.02120 0.96850 0.87801 1.22338 0.98798 0.96372 0.98054 1.20902 0.98495 0.97148 0.91656 1.21767 0.94979 0.95932 1.02390 1.22715 0.95744 0.96008 1.01039 1.21879 0.97915 0.94515 1.01235 1.20869 0.91522 0.87388 0.95203 0.95684 0.93654 0.94579 0.91623 0.91360 0.91253 0.74744 0.89611 0.90232 0.90276 0.89511 0.89638 0.89549 0.90939 0.91142 0.92319 0.91782 0.91533 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.55 55.49 0.59 -26.14 16 2 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.22 10.28 -15.05 -0.15 -6.38 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.58 -14.35 3.10 -162.16 -0.50 -14.85 16 10 C 0.18 4.33 5.34 -0.33 0.00 4.33 16 11 C -0.14 -2.81 6.26 -25.02 -0.16 -2.97 16 12 C 0.13 2.41 0.42 -130.69 -0.05 2.36 16 13 N -0.66 -12.66 4.35 -47.68 -0.21 -12.86 16 14 C 0.60 11.24 7.12 -12.60 -0.09 11.15 16 15 O -0.54 -10.74 15.09 5.26 0.08 -10.66 16 16 C 0.01 0.15 7.44 -14.76 -0.11 0.04 16 17 N -0.41 -7.20 10.22 -6.78 -0.07 -7.27 16 18 C 0.04 0.57 7.62 -82.49 -0.63 -0.06 16 19 C -0.28 -3.45 7.17 -34.97 -0.25 -3.70 16 20 S 0.24 3.22 23.03 -107.50 -2.48 0.74 16 21 C -0.03 -0.29 6.80 -26.62 -0.18 -0.47 16 22 C -0.12 -0.88 7.11 -25.49 -0.18 -1.06 16 23 C -0.04 -0.45 6.81 -26.24 -0.18 -0.62 16 24 C -0.11 -1.79 6.01 -26.54 -0.16 -1.95 16 25 C -0.12 -1.69 6.91 -23.88 -0.17 -1.85 16 26 C -0.12 -2.00 6.45 -26.19 -0.17 -2.17 16 27 C 0.16 3.25 2.62 -68.69 -0.18 3.07 16 28 H 0.03 0.53 7.99 -51.93 -0.41 0.12 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.04 0.95 7.98 -51.93 -0.41 0.53 16 31 H 0.07 1.80 7.05 -51.92 -0.37 1.43 16 32 H 0.07 1.41 7.17 -51.93 -0.37 1.04 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.41 8.50 7.44 -40.82 -0.30 8.20 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.17 6.84 -51.93 -0.36 0.81 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.19 7.37 -51.93 -0.38 0.80 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -31.14 374.61 -11.53 -42.67 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.81 Total: 6.25 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.76 Total: -0.45 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.19 Total: -61.12 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.48 Total: 0.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.14 -11.53 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991841396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.666 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds