Wall clock time and date at job start Wed Apr 1 2020 04:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00243 * 2 1 4 4 H 1.48499 * 109.47217 * 240.00042 * 3 2 1 5 5 H 1.48493 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46872 * 120.00252 * 3 2 1 7 7 C 1.38818 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00482 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99558 * 0.02562 * 7 2 1 10 10 C 1.49291 * 127.10208 * 359.97018 * 9 7 2 11 11 C 1.56983 * 106.43587 * 171.66598 * 10 9 7 12 12 C 1.52131 * 100.46356 * 336.09535 * 11 10 9 13 13 N 1.46496 * 111.08453 * 286.47049 * 12 11 10 14 14 C 1.34777 * 120.00258 * 288.30892 * 13 12 11 15 15 O 1.21615 * 119.99846 * 359.97438 * 14 13 12 16 16 C 1.47256 * 119.99881 * 179.97438 * 14 13 12 17 17 N 1.29764 * 125.52747 * 359.69092 * 16 14 13 18 18 C 1.32593 * 116.75567 * 179.77133 * 17 16 14 19 19 C 1.34629 * 114.30854 * 0.54722 * 18 17 16 20 20 S 1.71626 * 109.59870 * 359.68721 * 19 18 17 21 21 C 1.51943 * 110.68854 * 179.64891 * 19 18 17 22 22 C 1.54237 * 104.84702 * 342.60826 * 21 19 18 23 23 C 1.52801 * 136.15985 * 180.19905 * 18 17 16 24 24 C 1.51229 * 122.55257 * 151.79879 * 12 11 10 25 25 C 1.55049 * 104.91259 * 219.09655 * 24 12 11 26 26 C 1.56289 * 105.92080 * 6.67433 * 25 24 12 27 27 C 1.42704 * 127.10029 * 180.02562 * 9 7 2 28 28 H 1.09001 * 108.18750 * 103.42757 * 27 9 7 29 29 H 0.96999 * 119.99710 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.05067 * 290.62243 * 10 9 7 31 31 H 1.09009 * 110.05150 * 52.09775 * 10 9 7 32 32 H 1.09001 * 110.94397 * 218.47687 * 11 10 9 33 33 H 1.09000 * 111.67767 * 94.01662 * 11 10 9 34 34 H 0.96999 * 119.99694 * 108.30282 * 13 12 11 35 35 H 1.09001 * 110.36501 * 101.44203 * 21 19 18 36 36 H 1.08994 * 110.36923 * 223.75903 * 21 19 18 37 37 H 1.08995 * 110.94925 * 268.38533 * 22 21 19 38 38 H 1.08996 * 110.98575 * 144.67566 * 22 21 19 39 39 H 1.09003 * 110.31360 * 316.82272 * 23 18 17 40 40 H 1.08993 * 110.31689 * 79.00153 * 23 18 17 41 41 H 1.08999 * 110.40930 * 337.32199 * 24 12 11 42 42 H 1.08993 * 110.41169 * 99.76185 * 24 12 11 43 43 H 1.08999 * 109.85082 * 247.72617 * 25 24 12 44 44 H 1.09004 * 110.54513 * 125.98211 * 25 24 12 45 45 H 1.09001 * 110.96779 * 266.52119 * 26 25 24 46 46 H 1.08998 * 110.97413 * 142.75711 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1559 -2.5726 -0.0017 11 6 -0.4126 -4.1057 -0.2213 12 6 0.8804 -4.5055 -0.9161 13 7 0.9081 -4.0199 -2.2979 14 6 0.1154 -4.5883 -3.2280 15 8 -0.6226 -5.5045 -2.9202 16 6 0.1429 -4.0997 -4.6169 17 7 0.8815 -3.1294 -5.0604 18 6 0.7707 -2.8356 -6.3486 19 6 -0.1179 -3.5956 -7.0159 20 16 -0.8253 -4.7317 -5.9415 21 6 -0.1851 -3.1849 -8.4773 22 6 0.4551 -1.7823 -8.5234 23 6 1.4005 -1.8257 -7.3069 24 6 1.4596 -5.8991 -0.8180 25 6 2.9914 -5.6875 -0.7052 26 6 3.2024 -4.1447 -0.5712 27 6 1.8808 -3.7027 -0.0018 28 1 1.7908 -4.1101 1.0052 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5713 -2.2619 0.9569 31 1 -0.6046 -1.9938 -0.8091 32 1 -1.2737 -4.2676 -0.8696 33 1 -0.5302 -4.6339 0.7249 34 1 1.4970 -3.2893 -2.5435 35 1 0.3832 -3.8815 -9.0936 36 1 -1.2215 -3.1400 -8.8115 37 1 -0.2997 -1.0053 -8.4030 38 1 1.0152 -1.6391 -9.4474 39 1 1.4583 -0.8436 -6.8374 40 1 2.3926 -2.1597 -7.6103 41 1 1.0898 -6.4024 0.0752 42 1 1.2145 -6.4762 -1.7096 43 1 3.4834 -6.0572 -1.6049 44 1 3.3844 -6.1980 0.1741 45 1 3.3797 -3.6892 -1.5455 46 1 4.0178 -3.9207 0.1166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991841396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:33 Heat of formation + Delta-G solvation = 36.002090 kcal Electronic energy + Delta-G solvation = -29228.802728 eV Core-core repulsion = 25438.436892 eV Total energy + Delta-G solvation = -3790.365836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10122 -41.30606 -39.57796 -36.92500 -36.19663 -34.50697 -33.58621 -31.70020 -29.74649 -29.43080 -28.58087 -27.37004 -26.20532 -25.90984 -23.14488 -22.24565 -21.82097 -21.27333 -20.73985 -19.92312 -19.10792 -18.38511 -18.05718 -17.39079 -16.98845 -16.46472 -16.33837 -15.83950 -15.75660 -15.63730 -15.24320 -15.05611 -14.45164 -14.30751 -14.20767 -14.09095 -13.76738 -13.57494 -13.09537 -13.00932 -12.96070 -12.88036 -12.64303 -12.29273 -12.23901 -12.15544 -12.14663 -12.09517 -11.91754 -11.83900 -11.61167 -11.46454 -11.34860 -10.99103 -10.76653 -10.67563 -10.49368 -10.08746 -9.59870 -8.88975 -7.85321 -5.20788 -0.81304 -0.04208 0.65845 1.18388 1.44586 1.47419 1.53157 2.05052 2.17149 2.48940 2.74653 3.04710 3.34795 3.46278 3.58176 3.74146 3.85943 4.00939 4.06507 4.12547 4.22808 4.36054 4.39048 4.40348 4.52615 4.54298 4.59699 4.72382 4.77088 4.82033 4.86030 4.90840 4.93979 5.03648 5.07741 5.08536 5.16253 5.19705 5.24981 5.28174 5.46675 5.52850 5.55833 5.61260 5.71993 6.16508 6.31468 6.54632 7.02415 7.04753 7.75604 8.47345 9.26501 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.004366 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.564365 B = 6411.533600 C = 8229.366042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.598 5.598 10 C 0.190 3.810 11 C -0.127 4.127 12 C 0.134 3.866 13 N -0.664 5.664 14 C 0.595 3.405 15 O -0.556 6.556 16 C -0.042 4.042 17 N -0.440 5.440 18 C 0.001 3.999 19 C -0.257 4.257 20 S 0.274 5.726 21 C -0.035 4.035 22 C -0.106 4.106 23 C -0.045 4.045 24 C -0.107 4.107 25 C -0.102 4.102 26 C -0.113 4.113 27 C 0.147 3.853 28 H 0.029 0.971 29 H 0.245 0.755 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -10.636 -17.240 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.255 4.255 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.322 5.322 10 C 0.065 3.935 11 C -0.166 4.166 12 C 0.046 3.954 13 N -0.313 5.313 14 C 0.378 3.622 15 O -0.436 6.436 16 C -0.317 4.317 17 N -0.157 5.157 18 C -0.135 4.135 19 C -0.380 4.380 20 S 0.531 5.469 21 C -0.075 4.075 22 C -0.145 4.145 23 C -0.084 4.084 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.151 4.151 27 C 0.038 3.962 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.242 0.758 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.651 -11.620 -16.598 20.329 hybrid contribution 0.717 2.455 0.198 2.565 sum 2.368 -9.165 -16.401 18.937 Atomic orbital electron populations 1.70130 1.06394 1.25175 1.58295 1.25573 0.96357 1.00854 1.02694 0.85240 0.77174 0.79233 0.78235 1.20384 1.22517 1.20178 1.19341 0.90817 0.83248 1.42758 0.89544 1.43788 1.01912 1.00467 1.85994 1.21830 0.83366 0.90739 0.97516 1.22797 0.96862 0.96590 1.00368 1.21721 0.97315 0.95783 0.80531 1.45560 1.41245 1.36329 1.08190 1.16877 0.80459 0.82205 0.82643 1.90762 1.41411 1.30449 1.80951 1.27224 1.03509 1.00712 1.00278 1.65894 1.21839 1.12699 1.15311 1.22400 1.00765 1.02684 0.87603 1.27644 1.02462 1.01741 1.06189 1.83459 1.36571 1.29816 0.97007 1.20986 1.03958 0.97635 0.84891 1.22393 0.98323 0.95848 0.97897 1.21115 0.99909 0.95505 0.91901 1.21776 0.96004 0.93721 1.03031 1.22657 0.94511 0.93788 1.03081 1.21886 0.96306 0.96462 1.00478 1.21112 0.93999 0.85273 0.95784 0.95382 0.94618 0.97674 0.95723 0.92195 0.89074 0.75775 0.86970 0.88243 0.90244 0.86122 0.90848 0.88215 0.89174 0.91573 0.90910 0.89020 0.92726 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.23 10.55 21.65 0.23 -58.00 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.23 -12.85 10.28 84.03 0.86 -11.98 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.60 -30.37 3.10 -666.96 -2.07 -32.44 16 10 C 0.19 9.78 5.34 87.24 0.47 10.25 16 11 C -0.13 -5.26 6.26 31.71 0.20 -5.07 16 12 C 0.13 5.06 0.42 4.34 0.00 5.06 16 13 N -0.66 -26.43 4.35 -423.01 -1.84 -28.27 16 14 C 0.60 23.24 7.12 86.61 0.62 23.86 16 15 O -0.56 -22.64 15.09 -4.08 -0.06 -22.70 16 16 C -0.04 -1.50 7.44 87.37 0.65 -0.85 16 17 N -0.44 -15.80 10.22 -175.37 -1.79 -17.59 16 18 C 0.00 0.04 7.62 42.30 0.32 0.36 16 19 C -0.26 -5.94 7.17 25.26 0.18 -5.76 16 20 S 0.27 7.27 23.03 -56.49 -1.30 5.97 16 21 C -0.04 -0.45 6.80 30.67 0.21 -0.24 16 22 C -0.11 -1.23 7.11 31.40 0.22 -1.01 16 23 C -0.04 -0.87 6.81 30.91 0.21 -0.66 16 24 C -0.11 -3.23 6.01 30.72 0.18 -3.05 16 25 C -0.10 -2.68 6.91 32.44 0.22 -2.45 16 26 C -0.11 -3.73 6.45 30.94 0.20 -3.53 16 27 C 0.15 5.96 2.62 46.49 0.12 6.08 16 28 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 29 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.01 0.28 7.98 -2.39 -0.02 0.26 16 31 H 0.02 1.45 7.05 -2.38 -0.02 1.43 16 32 H 0.06 2.57 7.17 -2.39 -0.02 2.55 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.41 17.50 7.44 -92.71 -0.69 16.80 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.10 6.84 -2.39 -0.02 2.08 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 45 H 0.05 1.93 7.37 -2.39 -0.02 1.91 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -72.17 374.61 0.65 -71.52 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.32 Total: 25.31 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.14 Total: 7.94 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -5.47 Total: -136.30 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.30 Total: 5.97 kcal Total: -72.17 0.65 -71.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991841396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.525 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds