Wall clock time and date at job start Wed Apr 1 2020 04:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34584 * 125.74850 * 2 1 4 4 N 1.30873 * 107.62643 * 180.02562 * 3 2 1 5 5 C 1.34546 * 107.26705 * 359.97438 * 4 3 2 6 6 C 1.47870 * 126.04591 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99858 * 172.45502 * 6 5 4 8 8 N 1.34771 * 120.00414 * 352.45147 * 6 5 4 9 9 C 1.46927 * 120.62579 * 353.87678 * 8 6 5 10 10 C 1.53196 * 108.77744 * 126.36759 * 9 8 6 11 11 C 1.53106 * 109.33026 * 54.62900 * 10 9 8 12 12 H 1.09003 * 109.44986 * 58.65404 * 11 10 9 13 13 C 1.52996 * 109.50576 * 178.63263 * 11 10 9 14 14 F 1.39899 * 109.47609 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47166 * 300.05590 * 13 11 10 16 16 F 1.39903 * 109.47200 * 60.05406 * 13 11 10 17 17 C 1.53037 * 109.50631 * 298.66126 * 11 10 9 18 18 H 1.09006 * 109.49839 * 181.31356 * 17 11 10 19 19 N 1.46502 * 109.49883 * 301.37861 * 17 11 10 20 20 C 1.36928 * 119.99957 * 204.93423 * 19 17 11 21 21 H 1.08004 * 120.00525 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99974 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99689 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00119 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46827 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.46870 * 299.99458 * 24 22 20 27 27 H 1.48495 * 109.47394 * 59.99646 * 24 22 20 28 28 C 1.46922 * 120.63533 * 173.84840 * 8 6 5 29 29 N 1.28851 * 125.74933 * 180.32398 * 2 1 3 30 30 H 1.09000 * 109.47651 * 89.99641 * 1 2 3 31 31 H 1.09000 * 109.46968 * 209.99786 * 1 2 3 32 32 H 1.09002 * 109.46770 * 329.99486 * 1 2 3 33 33 H 1.07996 * 126.18553 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.58599 * 246.15275 * 9 8 6 35 35 H 1.08994 * 109.59128 * 6.43547 * 9 8 6 36 36 H 1.08996 * 109.50337 * 174.58356 * 10 9 8 37 37 H 1.09002 * 109.49614 * 294.68200 * 10 9 8 38 38 H 0.97001 * 119.99541 * 24.93815 * 19 17 11 39 39 H 0.96997 * 120.00214 * 0.02562 * 23 22 20 40 40 H 1.09002 * 109.58478 * 113.84730 * 28 8 6 41 41 H 1.09005 * 109.58460 * 353.42173 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6852 -0.0006 5 6 3.4750 -0.6601 -0.0003 6 6 4.6575 -1.5480 -0.0002 7 8 4.5169 -2.7474 0.1382 8 7 5.8911 -1.0274 -0.1537 9 6 6.0692 0.3995 -0.4554 10 6 7.0246 1.0063 0.5771 11 6 8.3265 0.2008 0.5977 12 1 8.7760 0.2120 -0.3952 13 6 9.2968 0.8239 1.6033 14 9 10.4863 0.0878 1.6212 15 9 9.5704 2.1443 1.2306 16 9 8.7206 0.8091 2.8780 17 6 8.0273 -1.2436 1.0057 18 1 8.9572 -1.8111 1.0430 19 7 7.3927 -1.2573 2.3260 20 6 7.4879 -2.3690 3.1198 21 1 8.0312 -3.2356 2.7728 22 6 6.8862 -2.3823 4.3707 23 7 6.2246 -1.3260 4.7939 24 14 7.0166 -3.8985 5.4539 25 1 6.2934 -3.6597 6.7288 26 1 6.4133 -5.0607 4.7533 27 1 8.4461 -4.1807 5.7405 28 6 7.0834 -1.8758 -0.0219 29 7 2.2178 -1.0457 -0.0059 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9163 2.1190 -0.0004 34 1 6.4912 0.5119 -1.4541 35 1 5.1055 0.9063 -0.4068 36 1 7.2409 2.0404 0.3090 37 1 6.5618 0.9748 1.5635 38 1 6.9051 -0.4789 2.6379 39 1 6.1571 -0.5386 4.2316 40 1 7.5881 -1.9489 -0.9853 41 1 6.7891 -2.8698 0.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998263493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:33 Heat of formation + Delta-G solvation = -50.385182 kcal Electronic energy + Delta-G solvation = -32874.529311 eV Core-core repulsion = 27992.267487 eV Total energy + Delta-G solvation = -4882.261824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.55191 -47.12147 -46.88483 -43.49350 -39.70399 -37.44528 -34.93442 -34.15439 -32.78966 -31.78923 -31.13911 -28.68553 -28.09041 -26.68716 -24.24128 -23.48177 -23.00637 -22.57030 -22.00596 -20.28480 -19.07483 -17.92993 -17.82121 -17.64990 -17.11989 -16.96129 -16.82110 -16.16805 -15.91076 -15.13467 -14.99337 -14.58384 -14.11295 -13.93491 -13.76570 -13.66923 -13.54154 -13.47779 -13.36464 -13.29827 -13.12345 -13.06756 -13.04827 -12.62878 -12.53132 -12.11348 -11.85212 -11.57365 -11.11458 -10.93826 -10.64344 -10.50323 -10.37377 -10.34834 -9.93203 -9.89656 -9.58695 -9.50070 -9.08588 -8.96940 -8.23008 -6.95075 -5.99541 -2.99673 1.46911 2.09047 2.11825 3.17255 3.26199 3.60013 3.64982 3.66412 3.80551 4.05555 4.21743 4.27876 4.41687 4.55108 4.61620 4.69767 4.77151 4.89456 5.01462 5.12627 5.23888 5.34160 5.41827 5.51201 5.58609 5.74474 5.80189 5.93466 6.02313 6.06131 6.07085 6.27777 6.28862 6.49591 6.53916 6.67278 7.05116 7.67018 7.88308 7.99288 8.53641 8.86123 9.28405 10.15610 10.27273 11.48369 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.005090 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.386990 B = 5499.337163 C = 7289.228846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.307 5.307 3 C 0.188 3.812 4 N -0.482 5.482 5 C 0.161 3.839 6 C 0.616 3.384 7 O -0.512 6.512 8 N -0.578 5.578 9 C 0.072 3.928 10 C -0.125 4.125 11 C -0.143 4.143 12 H 0.108 0.892 13 C 0.457 3.543 14 F -0.187 7.187 15 F -0.198 7.198 16 F -0.160 7.160 17 C 0.170 3.830 18 H 0.075 0.925 19 N -0.720 5.720 20 C -0.329 4.329 21 H 0.065 0.935 22 C -0.038 4.038 23 N -0.939 5.939 24 Si 1.077 2.923 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.098 3.902 29 N -0.254 5.254 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.226 0.774 34 H 0.059 0.941 35 H 0.153 0.847 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.372 0.628 39 H 0.253 0.747 40 H 0.058 0.942 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 10.113 -14.630 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.102 5.102 3 C -0.106 4.106 4 N -0.208 5.208 5 C -0.119 4.119 6 C 0.399 3.601 7 O -0.384 6.384 8 N -0.311 5.311 9 C -0.051 4.051 10 C -0.163 4.163 11 C -0.163 4.163 12 H 0.126 0.874 13 C 0.403 3.597 14 F -0.169 7.169 15 F -0.179 7.179 16 F -0.141 7.141 17 C 0.058 3.942 18 H 0.092 0.908 19 N -0.364 5.364 20 C -0.460 4.460 21 H 0.083 0.917 22 C -0.236 4.236 23 N -0.584 5.584 24 Si 0.908 3.092 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.027 4.027 29 N -0.092 5.092 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.493 8.116 -13.071 17.113 hybrid contribution 0.313 1.410 -1.181 1.866 sum -7.180 9.526 -14.252 18.585 Atomic orbital electron populations 1.22227 0.72395 1.06063 1.04741 1.47323 1.09245 1.03864 1.49770 1.26613 0.86237 0.95976 1.01786 1.70742 1.19100 1.09613 1.21309 1.23899 0.92261 0.89154 1.06557 1.16226 0.80792 0.85615 0.77450 1.90817 1.84806 1.14070 1.48722 1.47496 1.04685 1.10017 1.68897 1.22775 1.04864 0.81098 0.96320 1.21871 0.93661 0.98511 1.02300 1.22848 0.95802 0.99677 0.98014 0.87377 1.20480 0.80740 0.75455 0.83043 1.93137 1.49833 1.77126 1.96774 1.93114 1.94552 1.38718 1.91556 1.93276 1.83732 1.95965 1.41165 1.20524 0.95953 0.90014 0.87682 0.90773 1.42475 1.63512 1.17356 1.13090 1.19934 1.32684 0.93840 0.99508 0.91717 1.25661 0.97751 1.03947 0.96221 1.70861 1.43755 1.04492 1.39313 0.83290 0.75558 0.74206 0.76121 1.21220 1.22238 1.22292 1.22546 0.85279 0.96659 0.98256 1.74372 1.02846 1.13053 1.18947 0.89273 0.88155 0.88028 0.75813 0.92241 0.83082 0.90180 0.89887 0.79172 0.93543 0.92426 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.38 59.85 0.68 1.12 16 2 N -0.31 -3.41 3.72 -69.39 -0.26 -3.67 16 3 C 0.19 1.90 12.62 -90.48 -1.14 0.75 16 4 N -0.48 -6.94 7.79 -12.37 -0.10 -7.03 16 5 C 0.16 2.91 7.69 -156.36 -1.20 1.71 16 6 C 0.62 12.84 7.70 -12.32 -0.09 12.74 16 7 O -0.51 -12.56 16.53 5.32 0.09 -12.47 16 8 N -0.58 -10.50 2.89 -173.87 -0.50 -11.01 16 9 C 0.07 1.05 6.32 -3.71 -0.02 1.03 16 10 C -0.13 -1.89 4.95 -26.57 -0.13 -2.03 16 11 C -0.14 -2.28 2.02 -90.55 -0.18 -2.46 16 12 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.46 8.13 2.69 37.16 0.10 8.23 16 14 F -0.19 -3.45 16.77 2.25 0.04 -3.41 16 15 F -0.20 -3.18 16.78 2.25 0.04 -3.14 16 16 F -0.16 -3.49 14.40 2.25 0.03 -3.46 16 17 C 0.17 3.32 2.45 -67.81 -0.17 3.15 16 18 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 19 N -0.72 -17.84 3.68 -53.31 -0.20 -18.03 16 20 C -0.33 -9.38 9.93 -15.06 -0.15 -9.53 16 21 H 0.06 1.82 7.83 -52.48 -0.41 1.41 16 22 C -0.04 -1.13 5.50 -17.43 -0.10 -1.23 16 23 N -0.94 -29.98 13.70 55.49 0.76 -29.22 16 24 Si 1.08 27.37 29.92 -169.99 -5.09 22.29 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.10 1.80 6.02 -3.71 -0.02 1.78 16 29 N -0.25 -4.24 12.09 32.07 0.39 -3.86 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.23 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.15 2.18 3.70 -76.45 -0.28 1.90 16 36 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 37 H 0.08 1.54 6.11 -51.93 -0.32 1.22 16 38 H 0.37 9.71 3.78 -40.82 -0.15 9.56 16 39 H 0.25 8.05 6.77 -40.82 -0.28 7.78 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.23 7.05 -51.93 -0.37 1.86 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -39.39 346.46 -6.37 -45.76 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.37 Total: 6.74 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: -2.43 Total: 15.28 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: 0.09 Total: -72.81 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -5.09 Total: 22.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.39 -6.37 -45.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998263493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.626 kcal (2) G-P(sol) polarization free energy of solvation -39.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds