Wall clock time and date at job start Wed Apr 1 2020 04:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34584 * 125.74850 * 2 1 4 4 N 1.30873 * 107.62643 * 180.02562 * 3 2 1 5 5 C 1.34546 * 107.26705 * 359.97438 * 4 3 2 6 6 C 1.47870 * 126.04591 * 180.02562 * 5 4 3 7 7 O 1.21556 * 119.99858 * 172.45502 * 6 5 4 8 8 N 1.34771 * 120.00414 * 352.45147 * 6 5 4 9 9 C 1.46927 * 120.62579 * 353.87678 * 8 6 5 10 10 C 1.53196 * 108.77744 * 126.36759 * 9 8 6 11 11 C 1.53106 * 109.33026 * 54.62900 * 10 9 8 12 12 H 1.09003 * 109.44986 * 58.65404 * 11 10 9 13 13 C 1.52996 * 109.50576 * 178.63263 * 11 10 9 14 14 F 1.39899 * 109.47609 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47166 * 300.05590 * 13 11 10 16 16 F 1.39903 * 109.47200 * 60.05406 * 13 11 10 17 17 C 1.53037 * 109.50631 * 298.66126 * 11 10 9 18 18 H 1.09006 * 109.49839 * 181.31356 * 17 11 10 19 19 N 1.46502 * 109.49883 * 301.37861 * 17 11 10 20 20 C 1.36928 * 119.99957 * 204.93423 * 19 17 11 21 21 H 1.08004 * 120.00525 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99974 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99689 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00119 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46827 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.46870 * 299.99458 * 24 22 20 27 27 H 1.48495 * 109.47394 * 59.99646 * 24 22 20 28 28 C 1.46922 * 120.63533 * 173.84840 * 8 6 5 29 29 N 1.28851 * 125.74933 * 180.32398 * 2 1 3 30 30 H 1.09000 * 109.47651 * 89.99641 * 1 2 3 31 31 H 1.09000 * 109.46968 * 209.99786 * 1 2 3 32 32 H 1.09002 * 109.46770 * 329.99486 * 1 2 3 33 33 H 1.07996 * 126.18553 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.58599 * 246.15275 * 9 8 6 35 35 H 1.08994 * 109.59128 * 6.43547 * 9 8 6 36 36 H 1.08996 * 109.50337 * 174.58356 * 10 9 8 37 37 H 1.09002 * 109.49614 * 294.68200 * 10 9 8 38 38 H 0.97001 * 119.99541 * 24.93815 * 19 17 11 39 39 H 0.96997 * 120.00214 * 0.02562 * 23 22 20 40 40 H 1.09002 * 109.58478 * 113.84730 * 28 8 6 41 41 H 1.09005 * 109.58460 * 353.42173 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4951 0.6852 -0.0006 5 6 3.4750 -0.6601 -0.0003 6 6 4.6575 -1.5480 -0.0002 7 8 4.5169 -2.7474 0.1382 8 7 5.8911 -1.0274 -0.1537 9 6 6.0692 0.3995 -0.4554 10 6 7.0246 1.0063 0.5771 11 6 8.3265 0.2008 0.5977 12 1 8.7760 0.2120 -0.3952 13 6 9.2968 0.8239 1.6033 14 9 10.4863 0.0878 1.6212 15 9 9.5704 2.1443 1.2306 16 9 8.7206 0.8091 2.8780 17 6 8.0273 -1.2436 1.0057 18 1 8.9572 -1.8111 1.0430 19 7 7.3927 -1.2573 2.3260 20 6 7.4879 -2.3690 3.1198 21 1 8.0312 -3.2356 2.7728 22 6 6.8862 -2.3823 4.3707 23 7 6.2246 -1.3260 4.7939 24 14 7.0166 -3.8985 5.4539 25 1 6.2934 -3.6597 6.7288 26 1 6.4133 -5.0607 4.7533 27 1 8.4461 -4.1807 5.7405 28 6 7.0834 -1.8758 -0.0219 29 7 2.2178 -1.0457 -0.0059 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9163 2.1190 -0.0004 34 1 6.4912 0.5119 -1.4541 35 1 5.1055 0.9063 -0.4068 36 1 7.2409 2.0404 0.3090 37 1 6.5618 0.9748 1.5635 38 1 6.9051 -0.4789 2.6379 39 1 6.1571 -0.5386 4.2316 40 1 7.5881 -1.9489 -0.9853 41 1 6.7891 -2.8698 0.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998263493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:32 Heat of formation + Delta-G solvation = -77.935915 kcal Electronic energy + Delta-G solvation = -32875.724000 eV Core-core repulsion = 27992.267487 eV Total energy + Delta-G solvation = -4883.456513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.99826 -48.51384 -48.42784 -44.48891 -41.15940 -39.00540 -36.32749 -35.53547 -34.35151 -32.82127 -32.79081 -30.35165 -29.17863 -27.89914 -25.92069 -25.10707 -24.33835 -23.83277 -23.10423 -21.61485 -20.52174 -19.45929 -19.25408 -19.18697 -18.78232 -18.19608 -17.77798 -17.35150 -17.30403 -16.82023 -16.30091 -15.92493 -15.64945 -15.46645 -15.37171 -15.18274 -14.91735 -14.87553 -14.63863 -14.61372 -14.50452 -14.38660 -14.07284 -13.88183 -13.71370 -13.52819 -13.33603 -12.90767 -12.65200 -12.57467 -12.24384 -12.09650 -11.92803 -11.81033 -11.46928 -11.44740 -11.22993 -11.08126 -10.65843 -10.57669 -9.75565 -9.00305 -8.34508 -5.26011 0.31637 1.10181 1.31401 1.52270 1.63812 1.77954 1.85948 1.96602 2.27342 2.68987 2.88471 2.96367 3.09261 3.16530 3.40684 3.45334 3.70238 3.81160 3.87356 3.89740 4.07579 4.17826 4.30765 4.35656 4.40820 4.57528 4.63100 4.67417 4.68119 4.71040 4.77140 4.97408 5.01386 5.20266 5.39770 5.52869 5.61226 5.92905 6.28073 6.53797 6.87602 7.12347 7.13421 8.02700 8.11620 9.16712 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.005090 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.386990 B = 5499.337163 C = 7289.228846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.301 5.301 3 C 0.208 3.792 4 N -0.499 5.499 5 C 0.127 3.873 6 C 0.602 3.398 7 O -0.572 6.572 8 N -0.575 5.575 9 C 0.070 3.930 10 C -0.118 4.118 11 C -0.131 4.131 12 H 0.157 0.843 13 C 0.454 3.546 14 F -0.192 7.192 15 F -0.184 7.184 16 F -0.189 7.189 17 C 0.163 3.837 18 H 0.072 0.928 19 N -0.730 5.730 20 C -0.318 4.318 21 H 0.063 0.937 22 C -0.103 4.103 23 N -0.972 5.972 24 Si 1.120 2.880 25 H -0.294 1.294 26 H -0.288 1.288 27 H -0.274 1.274 28 C 0.103 3.897 29 N -0.290 5.290 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.287 0.713 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.364 0.636 39 H 0.240 0.760 40 H 0.104 0.896 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 12.476 -16.842 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.095 5.095 3 C -0.085 4.085 4 N -0.225 5.225 5 C -0.152 4.152 6 C 0.387 3.613 7 O -0.449 6.449 8 N -0.306 5.306 9 C -0.051 4.051 10 C -0.156 4.156 11 C -0.151 4.151 12 H 0.174 0.826 13 C 0.400 3.600 14 F -0.174 7.174 15 F -0.165 7.165 16 F -0.171 7.171 17 C 0.053 3.947 18 H 0.090 0.910 19 N -0.374 5.374 20 C -0.449 4.449 21 H 0.081 0.919 22 C -0.295 4.295 23 N -0.621 5.621 24 Si 0.946 3.054 25 H -0.220 1.220 26 H -0.215 1.215 27 H -0.200 1.200 28 C -0.023 4.023 29 N -0.131 5.131 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.162 0.838 33 H 0.302 0.698 34 H 0.117 0.883 35 H 0.175 0.825 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.199 0.801 39 H 0.050 0.950 40 H 0.122 0.878 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.846 10.526 -15.349 20.198 hybrid contribution 0.364 0.784 -0.605 1.055 sum -7.482 11.310 -15.954 20.938 Atomic orbital electron populations 1.22777 0.69039 1.07694 1.06910 1.47761 1.10918 1.02907 1.47954 1.27718 0.84716 0.97715 0.98328 1.70583 1.21755 1.07682 1.22510 1.23400 0.91762 0.90351 1.09681 1.16800 0.82384 0.85514 0.76650 1.90755 1.85950 1.16559 1.51663 1.47652 1.03782 1.11506 1.67659 1.23079 1.05546 0.78673 0.97818 1.21850 0.92854 1.00403 1.00498 1.22867 0.96135 0.96665 0.99422 0.82556 1.20760 0.80812 0.76133 0.82248 1.93127 1.50169 1.77338 1.96728 1.93136 1.94464 1.37691 1.91225 1.93228 1.84257 1.96157 1.43447 1.20747 0.95402 0.92898 0.85622 0.91044 1.42564 1.63971 1.15953 1.14872 1.20244 1.30488 0.94666 0.99541 0.91873 1.26925 0.98379 1.05775 0.98398 1.70965 1.46446 1.05019 1.39639 0.82727 0.76587 0.71699 0.74396 1.21967 1.21534 1.20002 1.22371 0.85435 0.94597 0.99851 1.74259 1.03152 1.15952 1.19732 0.86805 0.89205 0.83761 0.69779 0.88284 0.82512 0.86659 0.93850 0.80065 0.95003 0.87798 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.38 127.77 1.45 1.99 16 2 N -0.30 -6.07 3.72 -373.46 -1.39 -7.46 16 3 C 0.21 3.52 12.62 180.30 2.27 5.79 16 4 N -0.50 -13.61 7.79 -193.04 -1.50 -15.11 16 5 C 0.13 4.65 7.69 137.13 1.05 5.70 16 6 C 0.60 26.08 7.70 86.79 0.67 26.75 16 7 O -0.57 -30.00 16.53 -3.89 -0.06 -30.06 16 8 N -0.57 -20.78 2.89 -822.28 -2.38 -23.16 16 9 C 0.07 1.86 6.32 86.36 0.55 2.41 16 10 C -0.12 -3.30 4.95 30.70 0.15 -3.15 16 11 C -0.13 -3.85 2.02 -10.75 -0.02 -3.87 16 12 H 0.16 3.17 8.14 -2.39 -0.02 3.15 16 13 C 0.45 15.48 2.69 71.98 0.19 15.67 16 14 F -0.19 -6.81 16.77 44.97 0.75 -6.06 16 15 F -0.18 -5.42 16.78 44.97 0.75 -4.66 16 16 F -0.19 -8.35 14.40 44.97 0.65 -7.71 16 17 C 0.16 6.30 2.45 45.07 0.11 6.41 16 18 H 0.07 2.79 7.70 -2.38 -0.02 2.77 16 19 N -0.73 -37.20 3.68 -322.56 -1.19 -38.39 16 20 C -0.32 -18.70 9.93 84.04 0.83 -17.86 16 21 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.10 -6.40 5.50 84.86 0.47 -5.94 16 23 N -0.97 -64.52 13.70 21.65 0.30 -64.23 16 24 Si 1.12 56.80 29.92 68.60 2.05 58.85 16 25 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.10 3.75 6.02 86.36 0.52 4.27 16 29 N -0.29 -9.80 12.09 -52.44 -0.63 -10.43 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.29 0.72 8.06 -2.91 -0.02 0.69 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.16 4.19 3.70 -50.81 -0.19 4.00 16 36 H 0.12 2.45 7.77 -2.39 -0.02 2.43 16 37 H 0.04 1.60 6.11 -2.39 -0.01 1.58 16 38 H 0.36 19.81 3.78 -92.71 -0.35 19.46 16 39 H 0.24 16.01 6.77 -92.71 -0.63 15.38 16 40 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.06 2.70 7.05 -2.38 -0.02 2.69 16 Total: -1.00 -94.97 346.46 6.33 -88.64 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.72 Total: 21.59 kcal Atomic # 6 Polarization: 29.92 SS G_CDS: 8.25 Total: 38.17 kcal Atomic # 7 Polarization: -151.98 SS G_CDS: -6.79 Total: -158.77 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.06 Total: -30.06 kcal Atomic # 9 Polarization: -20.58 SS G_CDS: 2.16 Total: -18.42 kcal Atomic # 14 Polarization: 56.80 SS G_CDS: 2.05 Total: 58.85 kcal Total: -94.97 6.33 -88.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998263493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.708 kcal (2) G-P(sol) polarization free energy of solvation -94.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds