Wall clock time and date at job start Wed Apr 1 2020 04:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28523 * 124.44346 * 2 1 4 4 C 1.31134 * 109.05734 * 179.69078 * 3 2 1 5 5 C 1.40922 * 105.77418 * 0.42967 * 4 3 2 6 6 C 1.47802 * 127.23512 * 179.83870 * 5 4 3 7 7 O 1.21559 * 120.00165 * 6.23116 * 6 5 4 8 8 N 1.34779 * 120.00130 * 186.23011 * 6 5 4 9 9 C 1.46924 * 120.62789 * 355.05978 * 8 6 5 10 10 C 1.53197 * 108.77486 * 126.37029 * 9 8 6 11 11 C 1.53106 * 109.33171 * 54.63441 * 10 9 8 12 12 H 1.08996 * 109.45348 * 58.64894 * 11 10 9 13 13 C 1.52997 * 109.50545 * 178.63410 * 11 10 9 14 14 F 1.39899 * 109.47003 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47028 * 300.05055 * 13 11 10 16 16 F 1.39895 * 109.47505 * 60.05188 * 13 11 10 17 17 C 1.53046 * 109.50229 * 298.65911 * 11 10 9 18 18 H 1.08994 * 109.49607 * 181.31400 * 17 11 10 19 19 N 1.46499 * 109.49374 * 301.38102 * 17 11 10 20 20 C 1.36946 * 119.99643 * 204.93724 * 19 17 11 21 21 H 1.07994 * 119.99914 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99921 * 179.72730 * 20 19 17 23 23 N 1.31615 * 120.00005 * 0.26924 * 22 20 19 24 24 Si 1.86791 * 119.99938 * 180.27489 * 22 20 19 25 25 H 1.48502 * 109.47599 * 89.99607 * 24 22 20 26 26 H 1.48507 * 109.47282 * 209.99972 * 24 22 20 27 27 H 1.48507 * 109.47324 * 329.99316 * 24 22 20 28 28 C 1.46931 * 120.63157 * 175.03807 * 8 6 5 29 29 N 1.28593 * 124.44393 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47503 * 270.03411 * 1 2 3 31 31 H 1.09010 * 109.46947 * 30.02937 * 1 2 3 32 32 H 1.08996 * 109.47307 * 150.02076 * 1 2 3 33 33 H 1.08000 * 127.11473 * 180.28815 * 4 3 2 34 34 H 1.09005 * 109.58848 * 246.15606 * 9 8 6 35 35 H 1.08998 * 109.59140 * 6.44084 * 9 8 6 36 36 H 1.08998 * 109.49589 * 174.58574 * 10 9 8 37 37 H 1.09001 * 109.49613 * 294.65205 * 10 9 8 38 38 H 0.96994 * 120.00559 * 24.93545 * 19 17 11 39 39 H 0.96996 * 120.00702 * 180.02562 * 23 22 20 40 40 H 1.09001 * 109.58726 * 113.84498 * 28 8 6 41 41 H 1.09003 * 109.70191 * 353.48873 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4658 -0.6972 0.0009 6 6 4.6486 -1.5835 0.0015 7 8 5.7621 -1.1110 0.1217 8 7 4.4926 -2.9156 -0.1313 9 6 3.1503 -3.5120 -0.1691 10 6 3.0297 -4.3753 -1.4289 11 6 4.1715 -5.3949 -1.4559 12 1 4.1266 -6.0140 -0.5600 13 6 4.0353 -6.2816 -2.6953 14 9 5.0787 -7.2134 -2.7189 15 9 2.8094 -6.9545 -2.6548 16 9 4.0938 -5.4876 -3.8456 17 6 5.5127 -4.6590 -1.5004 18 1 6.3246 -5.3848 -1.5432 19 7 5.5605 -3.8012 -2.6871 20 6 6.7678 -3.4507 -3.2303 21 1 7.6845 -3.8063 -2.7837 22 6 6.8130 -2.6425 -4.3580 23 7 5.6958 -2.2088 -4.9020 24 14 8.4594 -2.1707 -5.1035 25 1 8.8520 -3.1823 -6.1173 26 1 8.3463 -0.8390 -5.7510 27 1 9.4892 -2.1155 -4.0348 28 6 5.6615 -3.7990 -0.2415 29 7 2.1923 -1.0605 0.0005 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8901 -0.5135 33 1 4.3130 1.3694 0.0128 34 1 3.0011 -4.1324 0.7146 35 1 2.3999 -2.7218 -0.1918 36 1 2.0741 -4.8995 -1.4205 37 1 3.0882 -3.7396 -2.3125 38 1 4.7372 -3.4815 -3.0880 39 1 5.7272 -1.6444 -5.6902 40 1 5.7170 -4.4428 0.6364 41 1 6.5693 -3.1999 -0.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998306796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:44 Heat of formation + Delta-G solvation = -36.056571 kcal Electronic energy + Delta-G solvation = -32905.485614 eV Core-core repulsion = 28023.845125 eV Total energy + Delta-G solvation = -4881.640489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.51668 -47.09951 -46.82475 -43.62710 -39.72147 -37.44669 -34.38248 -33.77780 -32.91947 -32.41526 -31.10875 -28.81249 -28.18796 -26.80404 -24.40161 -23.53755 -23.17533 -22.22699 -21.97301 -20.30344 -18.93437 -17.81539 -17.80381 -17.49553 -17.29145 -16.99931 -16.88354 -16.34487 -15.50858 -14.93723 -14.76797 -14.59609 -14.31305 -13.96707 -13.73877 -13.51168 -13.43699 -13.42631 -13.28343 -13.11175 -13.03597 -12.99588 -12.94994 -12.64336 -12.45891 -12.18556 -11.82609 -11.65464 -11.12299 -10.94280 -10.82480 -10.77931 -10.43350 -10.36677 -10.04845 -9.97180 -9.71660 -9.63924 -9.37236 -9.00982 -8.25476 -6.93741 -5.71781 -3.01484 1.38833 2.04424 2.10804 3.22673 3.28535 3.49390 3.54764 3.56146 3.64475 3.92189 4.29729 4.41822 4.57344 4.65171 4.68357 4.75203 4.95386 5.02602 5.07171 5.12786 5.26278 5.32808 5.44783 5.48206 5.57046 5.66769 5.73764 5.78090 5.91447 6.02772 6.10090 6.15319 6.29378 6.51312 6.56174 6.69483 6.99666 7.70558 7.74491 8.13016 8.43687 8.51889 9.57429 10.07183 10.42409 11.50164 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005272 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.007390 B = 5309.869684 C = 7079.611411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.151 5.151 3 N -0.291 5.291 4 C 0.036 3.964 5 C -0.024 4.024 6 C 0.611 3.389 7 O -0.521 6.521 8 N -0.582 5.582 9 C 0.085 3.915 10 C -0.130 4.130 11 C -0.140 4.140 12 H 0.107 0.893 13 C 0.456 3.544 14 F -0.188 7.188 15 F -0.199 7.199 16 F -0.155 7.155 17 C 0.164 3.836 18 H 0.074 0.926 19 N -0.709 5.709 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.004 4.004 23 N -0.927 5.927 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.281 1.281 28 C 0.097 3.903 29 N -0.256 5.256 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.207 0.793 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.388 0.612 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 -2.082 12.464 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.052 5.052 3 N -0.131 5.131 4 C -0.147 4.147 5 C -0.187 4.187 6 C 0.395 3.605 7 O -0.394 6.394 8 N -0.314 5.314 9 C -0.039 4.039 10 C -0.169 4.169 11 C -0.160 4.160 12 H 0.125 0.875 13 C 0.401 3.599 14 F -0.170 7.170 15 F -0.181 7.181 16 F -0.136 7.136 17 C 0.051 3.949 18 H 0.092 0.908 19 N -0.352 5.352 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.201 4.201 23 N -0.574 5.574 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.206 1.206 28 C -0.028 4.028 29 N -0.104 5.104 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.224 0.776 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.490 -1.781 12.412 18.417 hybrid contribution 1.350 0.111 -0.965 1.663 sum -12.140 -1.670 11.446 16.768 Atomic orbital electron populations 1.22206 0.70148 1.06233 1.04990 1.48172 1.09074 0.99574 1.48414 1.73981 1.03930 1.15460 1.19755 1.24801 0.94152 0.93801 1.01955 1.23241 0.91127 0.94958 1.09355 1.16598 0.85726 0.81192 0.76974 1.90801 1.24072 1.74614 1.49941 1.47603 1.07611 1.05351 1.70811 1.22499 0.85758 0.99331 0.96352 1.21930 0.96633 0.97445 1.00854 1.22796 1.01197 0.97349 0.94708 0.87481 1.20483 0.72650 0.79338 0.87396 1.93134 1.58817 1.68014 1.96993 1.93111 1.45768 1.82302 1.96923 1.93314 1.95704 1.72672 1.51888 1.20602 0.92246 0.92600 0.89422 0.90816 1.42481 1.07103 1.57347 1.28307 1.19134 0.85423 1.25059 1.07479 0.91110 1.24676 0.96693 1.00280 0.98415 1.69658 1.25016 1.39140 1.23613 0.86222 0.83577 0.77476 0.79086 1.21849 1.21905 1.20644 1.22543 0.89353 0.93213 0.97712 1.73974 1.03248 1.14465 1.18704 0.89071 0.87747 0.87651 0.77585 0.91764 0.84836 0.90265 0.89421 0.77485 0.93655 0.92563 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.55 59.85 0.69 1.34 16 2 N -0.15 -1.83 4.35 -16.64 -0.07 -1.91 16 3 N -0.29 -4.04 12.01 30.90 0.37 -3.67 16 4 C 0.04 0.54 12.05 -16.83 -0.20 0.34 16 5 C -0.02 -0.40 6.95 -82.68 -0.57 -0.97 16 6 C 0.61 11.56 7.70 -12.35 -0.10 11.47 16 7 O -0.52 -11.45 16.39 5.31 0.09 -11.37 16 8 N -0.58 -9.84 2.89 -173.89 -0.50 -10.34 16 9 C 0.08 1.15 6.33 -3.71 -0.02 1.13 16 10 C -0.13 -1.88 4.95 -26.57 -0.13 -2.01 16 11 C -0.14 -2.12 2.02 -90.54 -0.18 -2.30 16 12 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 13 C 0.46 7.85 2.69 37.16 0.10 7.95 16 14 F -0.19 -3.35 16.77 2.25 0.04 -3.31 16 15 F -0.20 -3.12 16.78 2.25 0.04 -3.08 16 16 F -0.15 -3.31 14.40 2.25 0.03 -3.28 16 17 C 0.16 3.02 2.45 -67.81 -0.17 2.85 16 18 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 19 N -0.71 -16.91 3.68 -53.31 -0.20 -17.11 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 22 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 24 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.10 1.67 6.02 -3.71 -0.02 1.65 16 29 N -0.26 -3.59 8.51 33.42 0.28 -3.31 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.21 2.74 8.06 -52.49 -0.42 2.32 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.14 1.81 3.74 -108.11 -0.40 1.40 16 36 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 37 H 0.09 1.58 6.12 -51.93 -0.32 1.26 16 38 H 0.39 9.99 4.94 -40.82 -0.20 9.79 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.09 7.04 -51.93 -0.37 1.72 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -34.97 348.22 -4.42 -39.39 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.60 Total: 7.60 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -0.85 Total: 14.51 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.61 Total: -63.65 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 0.11 Total: -9.66 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.97 -4.42 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998306796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.337 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds