Wall clock time and date at job start Wed Apr 1 2020 04:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28523 * 124.44346 * 2 1 4 4 C 1.31134 * 109.05734 * 179.69078 * 3 2 1 5 5 C 1.40922 * 105.77418 * 0.42967 * 4 3 2 6 6 C 1.47802 * 127.23512 * 179.83870 * 5 4 3 7 7 O 1.21559 * 120.00165 * 6.23116 * 6 5 4 8 8 N 1.34779 * 120.00130 * 186.23011 * 6 5 4 9 9 C 1.46924 * 120.62789 * 355.05978 * 8 6 5 10 10 C 1.53197 * 108.77486 * 126.37029 * 9 8 6 11 11 C 1.53106 * 109.33171 * 54.63441 * 10 9 8 12 12 H 1.08996 * 109.45348 * 58.64894 * 11 10 9 13 13 C 1.52997 * 109.50545 * 178.63410 * 11 10 9 14 14 F 1.39899 * 109.47003 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47028 * 300.05055 * 13 11 10 16 16 F 1.39895 * 109.47505 * 60.05188 * 13 11 10 17 17 C 1.53046 * 109.50229 * 298.65911 * 11 10 9 18 18 H 1.08994 * 109.49607 * 181.31400 * 17 11 10 19 19 N 1.46499 * 109.49374 * 301.38102 * 17 11 10 20 20 C 1.36946 * 119.99643 * 204.93724 * 19 17 11 21 21 H 1.07994 * 119.99914 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99921 * 179.72730 * 20 19 17 23 23 N 1.31615 * 120.00005 * 0.26924 * 22 20 19 24 24 Si 1.86791 * 119.99938 * 180.27489 * 22 20 19 25 25 H 1.48502 * 109.47599 * 89.99607 * 24 22 20 26 26 H 1.48507 * 109.47282 * 209.99972 * 24 22 20 27 27 H 1.48507 * 109.47324 * 329.99316 * 24 22 20 28 28 C 1.46931 * 120.63157 * 175.03807 * 8 6 5 29 29 N 1.28593 * 124.44393 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47503 * 270.03411 * 1 2 3 31 31 H 1.09010 * 109.46947 * 30.02937 * 1 2 3 32 32 H 1.08996 * 109.47307 * 150.02076 * 1 2 3 33 33 H 1.08000 * 127.11473 * 180.28815 * 4 3 2 34 34 H 1.09005 * 109.58848 * 246.15606 * 9 8 6 35 35 H 1.08998 * 109.59140 * 6.44084 * 9 8 6 36 36 H 1.08998 * 109.49589 * 174.58574 * 10 9 8 37 37 H 1.09001 * 109.49613 * 294.65205 * 10 9 8 38 38 H 0.96994 * 120.00559 * 24.93545 * 19 17 11 39 39 H 0.96996 * 120.00702 * 180.02562 * 23 22 20 40 40 H 1.09001 * 109.58726 * 113.84498 * 28 8 6 41 41 H 1.09003 * 109.70191 * 353.48873 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7120 0.0067 5 6 3.4658 -0.6972 0.0009 6 6 4.6486 -1.5835 0.0015 7 8 5.7621 -1.1110 0.1217 8 7 4.4926 -2.9156 -0.1313 9 6 3.1503 -3.5120 -0.1691 10 6 3.0297 -4.3753 -1.4289 11 6 4.1715 -5.3949 -1.4559 12 1 4.1266 -6.0140 -0.5600 13 6 4.0353 -6.2816 -2.6953 14 9 5.0787 -7.2134 -2.7189 15 9 2.8094 -6.9545 -2.6548 16 9 4.0938 -5.4876 -3.8456 17 6 5.5127 -4.6590 -1.5004 18 1 6.3246 -5.3848 -1.5432 19 7 5.5605 -3.8012 -2.6871 20 6 6.7678 -3.4507 -3.2303 21 1 7.6845 -3.8063 -2.7837 22 6 6.8130 -2.6425 -4.3580 23 7 5.6958 -2.2088 -4.9020 24 14 8.4594 -2.1707 -5.1035 25 1 8.8520 -3.1823 -6.1173 26 1 8.3463 -0.8390 -5.7510 27 1 9.4892 -2.1155 -4.0348 28 6 5.6615 -3.7990 -0.2415 29 7 2.1923 -1.0605 0.0005 30 1 -0.3634 0.0006 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3634 -0.8901 -0.5135 33 1 4.3130 1.3694 0.0128 34 1 3.0011 -4.1324 0.7146 35 1 2.3999 -2.7218 -0.1918 36 1 2.0741 -4.8995 -1.4205 37 1 3.0882 -3.7396 -2.3125 38 1 4.7372 -3.4815 -3.0880 39 1 5.7272 -1.6444 -5.6902 40 1 5.7170 -4.4428 0.6364 41 1 6.5693 -3.1999 -0.3133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998306796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:43 Heat of formation + Delta-G solvation = -61.075173 kcal Electronic energy + Delta-G solvation = -32906.570502 eV Core-core repulsion = 28023.845125 eV Total energy + Delta-G solvation = -4882.725376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.90858 -48.43913 -48.31929 -44.69940 -41.08355 -38.89372 -35.98677 -34.80047 -34.40078 -33.61070 -32.75748 -30.43935 -29.17071 -28.03994 -26.08399 -25.03983 -24.43965 -23.60025 -22.98414 -21.62718 -20.32013 -19.38778 -19.16386 -19.06338 -18.46415 -18.30839 -17.99320 -17.64344 -17.00323 -16.44248 -16.14423 -15.97503 -15.75355 -15.47364 -15.22628 -15.03794 -14.80895 -14.74319 -14.51737 -14.48546 -14.35265 -14.26275 -13.87826 -13.74028 -13.60505 -13.58542 -13.13550 -13.01550 -12.86126 -12.74244 -12.41631 -12.25591 -12.10497 -11.72661 -11.55838 -11.52670 -11.31080 -11.14900 -10.89051 -10.43476 -9.68095 -8.88185 -7.89606 -5.15530 0.22918 0.88573 1.26813 1.45049 1.46615 1.53883 1.93595 1.97508 2.32039 2.57116 2.82906 2.98044 3.12088 3.26184 3.44393 3.64398 3.82760 3.92522 3.99422 3.99830 4.11960 4.29412 4.32429 4.36319 4.39124 4.47914 4.68115 4.69371 4.70538 4.75012 4.79809 4.84088 5.03168 5.11690 5.26036 5.53584 5.58008 5.83765 6.30212 6.38603 6.99677 7.17653 7.40191 8.12137 8.34726 9.33159 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.005272 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.007390 B = 5309.869684 C = 7079.611411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.134 5.134 3 N -0.293 5.293 4 C 0.021 3.979 5 C -0.056 4.056 6 C 0.601 3.399 7 O -0.568 6.568 8 N -0.582 5.582 9 C 0.085 3.915 10 C -0.124 4.124 11 C -0.128 4.128 12 H 0.157 0.843 13 C 0.452 3.548 14 F -0.193 7.193 15 F -0.187 7.187 16 F -0.185 7.185 17 C 0.156 3.844 18 H 0.074 0.926 19 N -0.719 5.719 20 C -0.228 4.228 21 H 0.073 0.927 22 C -0.069 4.069 23 N -0.962 5.962 24 Si 0.960 3.040 25 H -0.289 1.289 26 H -0.301 1.301 27 H -0.273 1.273 28 C 0.103 3.897 29 N -0.244 5.244 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.046 0.954 38 H 0.378 0.622 39 H 0.245 0.755 40 H 0.103 0.897 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -3.517 14.539 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.038 5.038 3 N -0.134 5.134 4 C -0.161 4.161 5 C -0.217 4.217 6 C 0.387 3.613 7 O -0.446 6.446 8 N -0.312 5.312 9 C -0.038 4.038 10 C -0.162 4.162 11 C -0.148 4.148 12 H 0.174 0.826 13 C 0.398 3.602 14 F -0.174 7.174 15 F -0.168 7.168 16 F -0.167 7.167 17 C 0.046 3.954 18 H 0.092 0.908 19 N -0.361 5.361 20 C -0.360 4.360 21 H 0.091 0.909 22 C -0.262 4.262 23 N -0.613 5.613 24 Si 0.790 3.210 25 H -0.216 1.216 26 H -0.228 1.228 27 H -0.198 1.198 28 C -0.022 4.022 29 N -0.093 5.093 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.228 0.772 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.213 0.787 39 H 0.054 0.946 40 H 0.121 0.879 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.567 -3.275 14.533 21.547 hybrid contribution 1.821 0.468 -1.531 2.425 sum -13.746 -2.807 13.002 19.128 Atomic orbital electron populations 1.22853 0.66727 1.08100 1.07516 1.48859 1.10776 0.98741 1.45445 1.73988 1.03489 1.15974 1.19999 1.24975 0.95036 0.93716 1.02373 1.22945 0.91404 0.95088 1.12222 1.16996 0.85890 0.82033 0.76416 1.90756 1.25950 1.75575 1.52328 1.47756 1.08867 1.04846 1.69759 1.22753 0.83897 0.99690 0.97456 1.21906 0.97923 0.96908 0.99493 1.22824 0.99159 0.97362 0.95466 0.82568 1.20809 0.72915 0.79377 0.87078 1.93125 1.59160 1.68168 1.96973 1.93130 1.44874 1.82012 1.96814 1.93262 1.95892 1.73648 1.53881 1.20847 0.94575 0.92154 0.87866 0.90809 1.42574 1.05428 1.58130 1.29958 1.19483 0.86886 1.23088 1.06525 0.90904 1.25348 0.99279 1.01742 0.99792 1.69804 1.26603 1.40741 1.24161 0.85337 0.80691 0.76581 0.78372 1.21608 1.22816 1.19841 1.22366 0.88314 0.92897 0.98635 1.73901 1.02310 1.14911 1.18196 0.86148 0.86113 0.85686 0.77152 0.87580 0.84633 0.86852 0.93565 0.78690 0.94612 0.87910 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.55 127.77 1.48 2.24 16 2 N -0.13 -2.97 4.35 -206.55 -0.90 -3.87 16 3 N -0.29 -7.83 12.01 -56.16 -0.67 -8.51 16 4 C 0.02 0.63 12.05 85.45 1.03 1.66 16 5 C -0.06 -1.86 6.95 42.24 0.29 -1.57 16 6 C 0.60 23.06 7.70 86.77 0.67 23.73 16 7 O -0.57 -26.12 16.39 -3.90 -0.06 -26.19 16 8 N -0.58 -18.93 2.89 -822.33 -2.38 -21.31 16 9 C 0.08 2.02 6.33 86.36 0.55 2.57 16 10 C -0.12 -3.23 4.95 30.70 0.15 -3.07 16 11 C -0.13 -3.49 2.02 -10.74 -0.02 -3.52 16 12 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 13 C 0.45 14.71 2.69 71.98 0.19 14.90 16 14 F -0.19 -6.51 16.77 44.97 0.75 -5.76 16 15 F -0.19 -5.30 16.78 44.97 0.75 -4.54 16 16 F -0.19 -7.97 14.40 44.97 0.65 -7.32 16 17 C 0.16 5.54 2.45 45.07 0.11 5.65 16 18 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 19 N -0.72 -34.73 3.68 -322.57 -1.19 -35.92 16 20 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 23 N -0.96 -60.40 13.06 21.65 0.28 -60.12 16 24 Si 0.96 48.58 29.55 68.60 2.03 50.61 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 26 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 27 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 28 C 0.10 3.39 6.02 86.36 0.52 3.91 16 29 N -0.24 -6.41 8.51 -48.17 -0.41 -6.82 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.21 5.91 8.06 -2.91 -0.02 5.89 16 34 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.14 3.28 3.74 -75.07 -0.28 3.00 16 36 H 0.11 2.20 7.77 -2.39 -0.02 2.19 16 37 H 0.05 1.63 6.12 -2.39 -0.01 1.62 16 38 H 0.38 19.96 4.94 -92.71 -0.46 19.50 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.06 2.69 7.04 -2.39 -0.02 2.67 16 Total: -1.00 -80.63 348.22 5.51 -75.13 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.38 Total: 23.59 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 6.27 Total: 31.03 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -5.26 Total: -136.54 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 9 Polarization: -19.78 SS G_CDS: 2.16 Total: -17.62 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -80.63 5.51 -75.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998306796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.052 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds