Wall clock time and date at job start Wed Apr 1 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34769 * 120.00235 * 2 1 4 4 O 1.21282 * 120.00244 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99880 * 0.02562 * 3 2 1 6 6 C 1.50701 * 109.47051 * 179.97438 * 5 3 2 7 7 N 1.29736 * 126.29516 * 269.97257 * 6 5 3 8 8 O 1.41345 * 109.74444 * 179.81945 * 7 6 5 9 9 C 1.34900 * 109.32682 * 0.35099 * 8 7 6 10 10 C 1.38955 * 133.34076 * 179.97438 * 9 8 7 11 11 C 1.37752 * 119.97163 * 179.67820 * 10 9 8 12 12 C 1.38998 * 120.58594 * 359.97428 * 11 10 9 13 13 F 1.35100 * 119.84301 * 180.02562 * 12 11 10 14 14 C 1.37792 * 120.31745 * 0.02562 * 12 11 10 15 15 C 1.39724 * 119.65629 * 359.97438 * 14 12 11 16 16 C 1.46506 * 119.99742 * 180.02562 * 2 1 3 17 17 C 1.53777 * 113.61227 * 37.49650 * 16 2 1 18 18 C 1.53784 * 87.08156 * 220.01960 * 17 16 2 19 19 N 1.46494 * 113.69415 * 139.99320 * 18 17 16 20 20 C 1.36937 * 119.99734 * 107.46502 * 19 18 17 21 21 H 1.08001 * 120.00606 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99901 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00242 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47538 * 89.99423 * 24 22 20 26 26 H 1.48503 * 109.47152 * 209.99733 * 24 22 20 27 27 H 1.48507 * 109.46935 * 329.99265 * 24 22 20 28 28 C 1.53777 * 113.61460 * 299.99818 * 16 2 1 29 29 H 1.08999 * 109.47013 * 89.99627 * 1 2 3 30 30 H 1.09001 * 109.47157 * 210.00289 * 1 2 3 31 31 H 1.08997 * 109.46916 * 329.99853 * 1 2 3 32 32 H 1.09004 * 109.47483 * 59.99991 * 5 3 2 33 33 H 1.08996 * 109.47185 * 299.99655 * 5 3 2 34 34 H 1.07998 * 120.01232 * 359.69362 * 10 9 8 35 35 H 1.08006 * 119.70684 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.17381 * 179.97438 * 14 12 11 37 37 H 1.08997 * 112.84638 * 168.80010 * 16 2 1 38 38 H 1.09000 * 113.62081 * 334.56854 * 17 16 2 39 39 H 1.09000 * 113.61263 * 105.46953 * 17 16 2 40 40 H 1.09005 * 113.60968 * 270.88800 * 18 17 16 41 41 H 0.97001 * 120.00314 * 287.46521 * 19 18 17 42 42 H 0.97001 * 119.99981 * 180.02562 * 23 22 20 43 43 H 1.08996 * 113.61865 * 254.53254 * 28 16 2 44 44 H 1.09009 * 113.61608 * 25.43645 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4722 0.0006 6 6 2.3648 3.6177 0.0011 7 7 2.8635 4.2012 1.0470 8 8 3.7473 5.2283 0.6448 9 6 3.7864 5.2815 -0.7026 10 6 4.4730 6.0837 -1.6058 11 6 4.3092 5.8912 -2.9599 12 6 3.4609 4.8982 -3.4356 13 9 3.3118 4.7221 -4.7668 14 6 2.7712 4.0924 -2.5560 15 6 2.9286 4.2775 -1.1801 16 6 2.1975 -1.2688 -0.0006 17 6 1.5373 -2.3608 -0.8587 18 6 1.9128 -3.3527 0.2548 19 7 0.8728 -4.3460 0.5337 20 6 1.0474 -5.6475 0.1455 21 1 1.9520 -5.9419 -0.3659 22 6 0.0617 -6.5887 0.4093 23 7 -1.0406 -6.2301 1.0330 24 14 0.3001 -8.3643 -0.1195 25 1 0.9657 -9.1207 0.9713 26 1 -1.0215 -8.9757 -0.4109 27 1 1.1455 -8.4081 -1.3397 28 6 1.8954 -2.1550 1.2193 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7591 2.5299 0.8908 33 1 0.7585 2.5302 -0.8891 34 1 5.1350 6.8575 -1.2463 35 1 4.8447 6.5174 -3.6582 36 1 2.1123 3.3219 -2.9282 37 1 3.2625 -1.1426 -0.1956 38 1 0.4623 -2.2291 -0.9819 39 1 2.0527 -2.5466 -1.8011 40 1 2.9000 -3.7974 0.1287 41 1 0.0605 -4.0818 0.9933 42 1 -1.7292 -6.8879 1.2176 43 1 2.6997 -2.1748 1.9546 44 1 0.9182 -1.9671 1.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999538707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:20 Heat of formation + Delta-G solvation = 6.127070 kcal Electronic energy + Delta-G solvation = -29252.641722 eV Core-core repulsion = 24894.767232 eV Total energy + Delta-G solvation = -4357.874490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.96760 -42.98076 -41.37433 -39.47677 -38.56390 -36.24497 -35.77830 -34.87554 -32.11539 -31.82385 -30.94047 -30.39330 -28.00036 -26.62277 -26.24564 -24.83280 -24.21114 -23.85419 -22.04630 -20.64895 -20.05612 -19.35860 -19.04267 -18.58073 -18.31247 -17.68587 -17.50024 -17.07431 -16.87552 -16.50340 -16.37245 -16.10917 -15.98894 -15.45413 -15.20242 -15.01805 -14.64642 -14.37899 -14.27263 -14.26572 -13.95755 -13.56497 -13.36522 -13.23673 -13.13368 -13.08549 -12.98867 -12.79208 -12.66978 -12.37434 -12.23291 -12.20838 -12.13673 -11.99158 -11.67849 -11.43898 -10.94468 -10.86538 -10.20595 -9.64320 -9.59247 -8.98709 -7.94807 -5.22624 -0.63355 -0.08497 0.74962 1.27483 1.44948 1.48872 1.49627 1.57849 1.94498 2.28251 2.57143 2.71633 2.92381 3.20070 3.36918 3.38259 3.41413 3.73512 3.79479 3.86666 3.87689 3.94269 4.10333 4.16217 4.19163 4.24623 4.28041 4.34272 4.50478 4.70039 4.72822 4.75046 4.81898 4.85329 4.87637 4.88474 4.93753 5.01530 5.07670 5.14967 5.41477 5.48409 5.51173 5.63558 6.00938 6.27394 6.35217 7.01486 7.34488 8.09326 8.33429 9.28024 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.001940 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.408196 B =14429.832228 C =15108.210020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.516 3.484 4 O -0.583 6.583 5 C -0.071 4.071 6 C 0.158 3.842 7 N -0.303 5.303 8 O -0.106 6.106 9 C 0.053 3.947 10 C -0.091 4.091 11 C -0.080 4.080 12 C 0.064 3.936 13 F -0.136 7.136 14 C -0.077 4.077 15 C -0.176 4.176 16 C 0.132 3.868 17 C -0.157 4.157 18 C 0.151 3.849 19 N -0.721 5.721 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.074 4.074 23 N -0.966 5.966 24 Si 0.970 3.030 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.270 1.270 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.063 0.937 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 28.720 -8.669 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.322 5.322 3 C 0.304 3.696 4 O -0.463 6.463 5 C -0.111 4.111 6 C -0.024 4.024 7 N -0.047 5.047 8 O -0.117 6.117 9 C -0.001 4.001 10 C -0.111 4.111 11 C -0.100 4.100 12 C 0.045 3.955 13 F -0.115 7.115 14 C -0.097 4.097 15 C -0.180 4.180 16 C 0.028 3.972 17 C -0.198 4.198 18 C 0.040 3.960 19 N -0.359 5.359 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.266 4.266 23 N -0.617 5.617 24 Si 0.799 3.201 25 H -0.217 1.217 26 H -0.222 1.222 27 H -0.195 1.195 28 C -0.191 4.191 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.169 0.831 33 H 0.184 0.816 34 H 0.196 0.804 35 H 0.205 0.795 36 H 0.180 0.820 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.614 28.669 -7.427 30.142 hybrid contribution -0.329 -1.415 -0.672 1.601 sum 5.285 27.253 -8.099 28.918 Atomic orbital electron populations 1.22187 0.76979 1.04972 1.03963 1.47834 1.08370 1.04600 1.71419 1.20589 0.87463 0.85740 0.75794 1.90740 1.15910 1.87859 1.51788 1.20539 0.95335 0.84632 1.10576 1.24169 0.94116 0.94656 0.89442 1.79839 1.05039 1.00529 1.19261 1.89131 1.56513 1.47712 1.18327 1.20791 0.97330 0.97120 0.84819 1.20244 1.00753 1.00377 0.89681 1.21486 0.96455 0.96494 0.95551 1.17488 1.01186 0.99288 0.77586 1.91539 1.94728 1.94927 1.30266 1.20746 0.99716 0.99483 0.89787 1.20475 1.03291 0.99538 0.94666 1.22241 0.96912 0.81011 0.97066 1.24064 1.01335 0.95574 0.98835 1.21624 0.92416 0.87418 0.94523 1.42464 1.19319 1.05261 1.68876 1.19668 1.01727 0.86584 1.29573 0.90704 1.25514 0.96805 1.02042 1.02239 1.69791 1.09081 1.34505 1.48304 0.85197 0.76426 0.80491 0.77982 1.21704 1.22202 1.19542 1.23790 1.02121 0.95932 0.97304 0.90189 0.91127 0.87525 0.83145 0.81553 0.80430 0.79517 0.82012 0.87829 0.89497 0.91787 0.90821 0.79132 0.94016 0.91789 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 8.84 127.77 1.13 2.03 16 2 N -0.59 -13.11 3.08 -819.65 -2.53 -15.64 16 3 C 0.52 12.13 7.67 87.66 0.67 12.80 16 4 O -0.58 -19.42 15.52 -3.04 -0.05 -19.46 16 5 C -0.07 -1.03 4.85 29.10 0.14 -0.89 16 6 C 0.16 3.39 5.95 45.04 0.27 3.65 16 7 N -0.30 -8.07 12.81 -43.47 -0.56 -8.63 16 8 O -0.11 -2.76 12.07 29.09 0.35 -2.41 16 9 C 0.05 1.08 7.48 22.98 0.17 1.25 16 10 C -0.09 -1.14 10.06 22.33 0.22 -0.91 16 11 C -0.08 -0.81 9.99 22.34 0.22 -0.59 16 12 C 0.06 0.91 7.29 22.35 0.16 1.08 16 13 F -0.14 -2.10 17.26 44.97 0.78 -1.33 16 14 C -0.08 -1.21 10.08 22.52 0.23 -0.99 16 15 C -0.18 -3.53 6.32 -20.21 -0.13 -3.65 16 16 C 0.13 3.71 4.21 45.51 0.19 3.90 16 17 C -0.16 -4.84 7.31 31.12 0.23 -4.61 16 18 C 0.15 5.65 4.48 45.52 0.20 5.85 16 19 N -0.72 -34.61 5.40 -320.44 -1.73 -36.34 16 20 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 23 N -0.97 -57.23 13.06 21.65 0.28 -56.94 16 24 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 C -0.15 -4.75 7.37 31.12 0.23 -4.53 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.34 6.34 -2.39 -0.02 1.32 16 31 H 0.11 0.82 6.44 -2.39 -0.02 0.81 16 32 H 0.15 1.43 7.40 -2.38 -0.02 1.42 16 33 H 0.17 1.00 8.11 -2.39 -0.02 0.98 16 34 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.10 3.20 7.23 -2.39 -0.02 3.18 16 38 H 0.09 2.67 6.72 -2.39 -0.02 2.65 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.82 8.10 -2.38 -0.02 2.80 16 41 H 0.38 19.12 7.92 -92.71 -0.73 18.39 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 2.65 6.90 -2.38 -0.02 2.63 16 Total: -1.00 -76.17 377.33 4.15 -72.02 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.33 Total: 23.02 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.25 Total: -1.52 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.53 Total: -117.56 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.30 Total: -21.87 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.17 4.15 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999538707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.150 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds