Wall clock time and date at job start Wed Apr 1 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48501 * 109.47090 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99681 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00516 * 163.30523 * 7 2 1 9 9 N 1.36937 * 119.99849 * 343.30109 * 7 2 1 10 10 C 1.47168 * 120.71003 * 154.58444 * 9 7 2 11 11 C 1.53888 * 108.02591 * 132.75841 * 10 9 7 12 12 H 1.08999 * 112.09658 * 182.54625 * 11 10 9 13 13 C 1.54550 * 107.83317 * 306.50527 * 11 10 9 14 14 C 1.54277 * 104.84511 * 89.07431 * 13 11 10 15 15 C 1.54545 * 104.85316 * 359.97438 * 14 13 11 16 16 H 1.09008 * 112.18139 * 146.40732 * 15 14 13 17 17 C 1.48374 * 120.34764 * 334.43303 * 9 7 2 18 18 N 1.48306 * 107.20793 * 58.36542 * 11 10 9 19 19 C 1.34782 * 128.07866 * 106.70118 * 18 11 10 20 20 O 1.21283 * 120.00084 * 179.97438 * 19 18 11 21 21 C 1.50704 * 119.99777 * 0.02562 * 19 18 11 22 22 C 1.50697 * 109.46952 * 180.02562 * 21 19 18 23 23 C 1.33643 * 122.74910 * 85.02246 * 22 21 19 24 24 S 1.76206 * 107.91931 * 179.97438 * 23 22 21 25 25 C 1.70976 * 90.28421 * 0.02562 * 24 23 22 26 26 C 1.50703 * 124.91380 * 180.02562 * 25 24 23 27 27 C 1.52998 * 117.49873 * 8.76651 * 26 25 24 28 28 C 1.52993 * 117.49646 * 300.10347 * 26 25 24 29 29 N 1.29029 * 110.16661 * 359.73011 * 25 24 23 30 30 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.74527 * 13.12927 * 10 9 7 32 32 H 1.08993 * 109.79249 * 252.41571 * 10 9 7 33 33 H 1.09000 * 110.36013 * 330.23612 * 13 11 10 34 34 H 1.08993 * 110.45697 * 207.96529 * 13 11 10 35 35 H 1.09003 * 110.36713 * 241.15644 * 14 13 11 36 36 H 1.09009 * 110.45514 * 118.88832 * 14 13 11 37 37 H 1.09005 * 110.02062 * 107.42492 * 17 9 7 38 38 H 1.09003 * 110.08470 * 346.30099 * 17 9 7 39 39 H 1.09001 * 109.46396 * 299.99774 * 21 19 18 40 40 H 1.08999 * 109.47441 * 59.99783 * 21 19 18 41 41 H 1.07992 * 126.04196 * 359.97438 * 23 22 21 42 42 H 1.09006 * 115.54604 * 154.43617 * 26 25 24 43 43 H 1.08996 * 117.50196 * 0.02562 * 27 26 25 44 44 H 1.09006 * 117.49694 * 145.01931 * 27 26 25 45 45 H 1.08998 * 117.49952 * 214.97475 * 28 26 25 46 46 H 1.09002 * 117.50202 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2219 -0.2692 9 7 1.3688 -2.3632 0.3397 10 6 1.8505 -3.6617 -0.1582 11 6 1.9044 -4.6373 1.0307 12 1 2.2968 -5.6127 0.7432 13 6 2.7441 -3.9766 2.1474 14 6 1.7274 -3.1705 2.9820 15 6 0.3659 -3.4166 2.2935 16 1 -0.4582 -3.4371 3.0068 17 6 0.1760 -2.3300 1.2215 18 7 0.5358 -4.7151 1.5968 19 6 -0.3473 -5.7287 1.5003 20 8 -1.4365 -5.6360 2.0256 21 6 0.0193 -6.9776 0.7408 22 6 -1.1332 -7.9477 0.7831 23 6 -2.1505 -7.8998 -0.0822 24 16 -3.2664 -9.2027 0.3204 25 6 -2.2545 -9.6816 1.6127 26 6 -2.5299 -10.8355 2.5420 27 6 -3.6959 -11.7620 2.1915 28 6 -3.8185 -10.7873 3.3654 29 7 -1.2177 -8.9158 1.6731 30 1 -0.4849 0.8401 -0.0004 31 1 2.8467 -3.5458 -0.5850 32 1 1.1669 -4.0427 -0.9167 33 1 3.4927 -3.3120 1.7162 34 1 3.2231 -4.7369 2.7642 35 1 1.9761 -2.1094 2.9613 36 1 1.7045 -3.5340 4.0095 37 1 -0.7230 -2.5380 0.6412 38 1 0.0899 -1.3535 1.6981 39 1 0.2400 -6.7210 -0.2953 40 1 0.8971 -7.4357 1.1966 41 1 -2.2679 -7.1885 -0.8862 42 1 -1.6522 -11.2848 3.0067 43 1 -4.2635 -11.5373 1.2885 44 1 -3.5855 -12.8208 2.4260 45 1 -3.7887 -11.2052 4.3716 46 1 -4.4668 -9.9207 3.2353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018032798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:05 Heat of formation + Delta-G solvation = 77.017749 kcal Electronic energy + Delta-G solvation = -28389.825912 eV Core-core repulsion = 24601.238649 eV Total energy + Delta-G solvation = -3788.587263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.40358 -39.71726 -37.83693 -37.21060 -34.06020 -32.23711 -31.21170 -30.86641 -30.29597 -28.10430 -26.20442 -25.70677 -23.66484 -23.09201 -22.81279 -21.75728 -20.74591 -20.17408 -19.60510 -18.20922 -17.63310 -17.31970 -16.35073 -16.05952 -15.31863 -15.28001 -14.87854 -14.50545 -14.47337 -14.30432 -13.93530 -13.49390 -13.27357 -13.07619 -12.89856 -12.74340 -12.51482 -12.10933 -12.06208 -11.97236 -11.86060 -11.53217 -11.27138 -11.14544 -11.09101 -10.90511 -10.84440 -10.55867 -10.49404 -10.34367 -9.99975 -9.83775 -9.70453 -9.67468 -9.46724 -9.34606 -8.66801 -8.56223 -8.19313 -6.73984 -5.82996 -3.24723 0.64990 1.28163 1.66376 2.61984 3.04801 3.34075 3.37244 3.41886 3.42851 3.57388 3.78308 4.41751 4.43708 4.56486 4.64918 4.83392 4.94926 5.07485 5.11515 5.22704 5.27014 5.33410 5.36750 5.38158 5.43967 5.48374 5.55603 5.63331 5.69269 5.76428 5.78725 5.82342 6.03635 6.13294 6.20182 6.34381 6.40512 6.44196 6.59130 6.63763 6.74341 6.96719 7.27864 7.53737 7.72262 7.72644 8.13066 8.32253 8.60672 9.11094 9.75514 10.32277 11.25424 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.002423 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.911331 B =11551.003140 C =11851.201256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.139 3.861 11 C 0.105 3.895 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.113 4.113 15 C 0.106 3.894 16 H 0.085 0.915 17 C 0.175 3.825 18 N -0.605 5.605 19 C 0.536 3.464 20 O -0.548 6.548 21 C -0.063 4.063 22 C 0.096 3.904 23 C -0.241 4.241 24 S 0.115 5.885 25 C 0.077 3.923 26 C -0.083 4.083 27 C -0.170 4.170 28 C -0.160 4.160 29 N -0.461 5.461 30 H 0.255 0.745 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.177 0.823 42 H 0.132 0.868 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 -21.137 2.978 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.011 3.989 11 C 0.000 4.000 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.151 4.151 15 C 0.003 3.997 16 H 0.103 0.897 17 C 0.049 3.951 18 N -0.339 5.339 19 C 0.323 3.677 20 O -0.426 6.426 21 C -0.106 4.106 22 C -0.036 4.036 23 C -0.379 4.379 24 S 0.370 5.630 25 C -0.201 4.201 26 C -0.105 4.105 27 C -0.208 4.208 28 C -0.199 4.199 29 N -0.174 5.174 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.195 0.805 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.797 -21.449 3.209 22.017 hybrid contribution 1.137 1.666 -0.204 2.027 sum -2.661 -19.783 3.005 20.186 Atomic orbital electron populations 1.70030 1.05238 1.25601 1.53931 1.25015 0.95271 0.98357 1.01011 0.86314 0.79100 0.83749 0.77692 1.21485 1.21597 1.20475 1.19146 0.92459 0.84500 1.42027 0.91430 1.44359 1.32212 1.00809 1.53981 1.21435 0.98231 0.87058 0.92129 1.23025 0.81796 0.98967 0.96198 0.89535 1.22289 0.97862 0.98543 0.96184 1.22319 0.94260 1.01697 0.96827 1.23178 0.97461 0.83297 0.95804 0.89666 1.21474 0.88613 0.95791 0.89185 1.49168 1.15381 1.16281 1.53037 1.19761 0.83919 0.83089 0.80918 1.90684 1.22225 1.81116 1.48556 1.20157 0.96129 0.91637 1.02678 1.19446 0.97215 0.95131 0.91803 1.26778 0.98355 1.04871 1.07938 1.83677 1.26802 1.25325 1.27231 1.25963 0.94041 1.00250 0.99814 1.20381 0.94793 0.95020 1.00323 1.23152 1.00193 0.97295 1.00153 1.23159 0.98093 1.01939 0.96688 1.65882 1.22554 1.05036 1.23964 0.93531 0.91788 0.96418 0.89913 0.92870 0.89574 0.93153 0.95646 0.88986 0.87300 0.87452 0.80515 0.85000 0.88332 0.87312 0.87463 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.12 55.49 0.62 -25.05 16 2 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.46 9.64 -15.06 -0.15 -6.61 16 8 H 0.07 1.68 7.87 -52.49 -0.41 1.27 16 9 N -0.59 -13.79 2.31 -170.13 -0.39 -14.18 16 10 C 0.14 2.65 6.03 -3.21 -0.02 2.63 16 11 C 0.11 1.68 3.97 -65.66 -0.26 1.42 16 12 H 0.09 1.10 7.46 -51.93 -0.39 0.71 16 13 C -0.11 -1.73 6.18 -25.25 -0.16 -1.88 16 14 C -0.11 -1.97 6.18 -25.25 -0.16 -2.12 16 15 C 0.11 2.11 4.07 -65.68 -0.27 1.85 16 16 H 0.09 1.75 7.93 -51.92 -0.41 1.33 16 17 C 0.18 4.14 4.64 -2.58 -0.01 4.13 16 18 N -0.61 -11.06 2.76 -153.05 -0.42 -11.48 16 19 C 0.54 9.91 7.92 -10.98 -0.09 9.82 16 20 O -0.55 -12.19 16.35 5.55 0.09 -12.10 16 21 C -0.06 -0.91 5.11 -29.03 -0.15 -1.06 16 22 C 0.10 1.45 5.23 -84.23 -0.44 1.01 16 23 C -0.24 -3.30 11.14 29.12 0.32 -2.97 16 24 S 0.11 1.31 21.94 -107.50 -2.36 -1.05 16 25 C 0.08 0.99 7.04 -13.45 -0.09 0.89 16 26 C -0.08 -0.79 6.33 -91.77 -0.58 -1.37 16 27 C -0.17 -1.15 10.02 -26.69 -0.27 -1.42 16 28 C -0.16 -1.25 10.24 -26.69 -0.27 -1.53 16 29 N -0.46 -7.08 10.53 -8.06 -0.08 -7.17 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.35 7.84 -51.93 -0.41 0.94 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.64 7.83 -51.93 -0.41 1.23 16 36 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 2.39 6.33 -51.93 -0.33 2.06 16 39 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 0.66 7.23 -51.93 -0.38 0.29 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -32.63 382.73 -11.41 -44.03 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.92 Total: 2.50 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.67 Total: 2.76 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.28 Total: -57.87 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.36 Total: -1.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.63 -11.41 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018032798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.049 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds