Wall clock time and date at job start Wed Apr 1 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48501 * 109.47090 * 269.99513 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99681 * 3 2 1 6 6 H 1.48496 * 109.47136 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00516 * 163.30523 * 7 2 1 9 9 N 1.36937 * 119.99849 * 343.30109 * 7 2 1 10 10 C 1.47168 * 120.71003 * 154.58444 * 9 7 2 11 11 C 1.53888 * 108.02591 * 132.75841 * 10 9 7 12 12 H 1.08999 * 112.09658 * 182.54625 * 11 10 9 13 13 C 1.54550 * 107.83317 * 306.50527 * 11 10 9 14 14 C 1.54277 * 104.84511 * 89.07431 * 13 11 10 15 15 C 1.54545 * 104.85316 * 359.97438 * 14 13 11 16 16 H 1.09008 * 112.18139 * 146.40732 * 15 14 13 17 17 C 1.48374 * 120.34764 * 334.43303 * 9 7 2 18 18 N 1.48306 * 107.20793 * 58.36542 * 11 10 9 19 19 C 1.34782 * 128.07866 * 106.70118 * 18 11 10 20 20 O 1.21283 * 120.00084 * 179.97438 * 19 18 11 21 21 C 1.50704 * 119.99777 * 0.02562 * 19 18 11 22 22 C 1.50697 * 109.46952 * 180.02562 * 21 19 18 23 23 C 1.33643 * 122.74910 * 85.02246 * 22 21 19 24 24 S 1.76206 * 107.91931 * 179.97438 * 23 22 21 25 25 C 1.70976 * 90.28421 * 0.02562 * 24 23 22 26 26 C 1.50703 * 124.91380 * 180.02562 * 25 24 23 27 27 C 1.52998 * 117.49873 * 8.76651 * 26 25 24 28 28 C 1.52993 * 117.49646 * 300.10347 * 26 25 24 29 29 N 1.29029 * 110.16661 * 359.73011 * 25 24 23 30 30 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.74527 * 13.12927 * 10 9 7 32 32 H 1.08993 * 109.79249 * 252.41571 * 10 9 7 33 33 H 1.09000 * 110.36013 * 330.23612 * 13 11 10 34 34 H 1.08993 * 110.45697 * 207.96529 * 13 11 10 35 35 H 1.09003 * 110.36713 * 241.15644 * 14 13 11 36 36 H 1.09009 * 110.45514 * 118.88832 * 14 13 11 37 37 H 1.09005 * 110.02062 * 107.42492 * 17 9 7 38 38 H 1.09003 * 110.08470 * 346.30099 * 17 9 7 39 39 H 1.09001 * 109.46396 * 299.99774 * 21 19 18 40 40 H 1.08999 * 109.47441 * 59.99783 * 21 19 18 41 41 H 1.07992 * 126.04196 * 359.97438 * 23 22 21 42 42 H 1.09006 * 115.54604 * 154.43617 * 26 25 24 43 43 H 1.08996 * 117.50196 * 0.02562 * 27 26 25 44 44 H 1.09006 * 117.49694 * 145.01931 * 27 26 25 45 45 H 1.08998 * 117.49952 * 214.97475 * 28 26 25 46 46 H 1.09002 * 117.50202 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0561 -1.2219 -0.2692 9 7 1.3688 -2.3632 0.3397 10 6 1.8505 -3.6617 -0.1582 11 6 1.9044 -4.6373 1.0307 12 1 2.2968 -5.6127 0.7432 13 6 2.7441 -3.9766 2.1474 14 6 1.7274 -3.1705 2.9820 15 6 0.3659 -3.4166 2.2935 16 1 -0.4582 -3.4371 3.0068 17 6 0.1760 -2.3300 1.2215 18 7 0.5358 -4.7151 1.5968 19 6 -0.3473 -5.7287 1.5003 20 8 -1.4365 -5.6360 2.0256 21 6 0.0193 -6.9776 0.7408 22 6 -1.1332 -7.9477 0.7831 23 6 -2.1505 -7.8998 -0.0822 24 16 -3.2664 -9.2027 0.3204 25 6 -2.2545 -9.6816 1.6127 26 6 -2.5299 -10.8355 2.5420 27 6 -3.6959 -11.7620 2.1915 28 6 -3.8185 -10.7873 3.3654 29 7 -1.2177 -8.9158 1.6731 30 1 -0.4849 0.8401 -0.0004 31 1 2.8467 -3.5458 -0.5850 32 1 1.1669 -4.0427 -0.9167 33 1 3.4927 -3.3120 1.7162 34 1 3.2231 -4.7369 2.7642 35 1 1.9761 -2.1094 2.9613 36 1 1.7045 -3.5340 4.0095 37 1 -0.7230 -2.5380 0.6412 38 1 0.0899 -1.3535 1.6981 39 1 0.2400 -6.7210 -0.2953 40 1 0.8971 -7.4357 1.1966 41 1 -2.2679 -7.1885 -0.8862 42 1 -1.6522 -11.2848 3.0067 43 1 -4.2635 -11.5373 1.2885 44 1 -3.5855 -12.8208 2.4260 45 1 -3.7887 -11.2052 4.3716 46 1 -4.4668 -9.9207 3.2353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018032798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:05 Heat of formation + Delta-G solvation = 58.117854 kcal Electronic energy + Delta-G solvation = -28390.645473 eV Core-core repulsion = 24601.238649 eV Total energy + Delta-G solvation = -3789.406824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73551 -40.90410 -39.17805 -38.05301 -35.89647 -33.49505 -32.98730 -32.16366 -31.94399 -29.23998 -27.98719 -26.65567 -25.25848 -24.75835 -23.37423 -22.94804 -21.99623 -21.49519 -20.73610 -19.74069 -18.88971 -18.64002 -17.76341 -17.18229 -16.87074 -16.60037 -16.28552 -15.98426 -15.60021 -15.43750 -15.22126 -14.96414 -14.73091 -14.40755 -14.28479 -14.20997 -13.68715 -13.50712 -13.39043 -13.18972 -13.02917 -12.86911 -12.66423 -12.57636 -12.28443 -12.25265 -12.12595 -12.04425 -11.81603 -11.72728 -11.55978 -11.50738 -11.14601 -10.93665 -10.68927 -10.57939 -10.33758 -9.80128 -9.62956 -8.67551 -7.84993 -5.29199 -0.32498 0.34855 0.68614 1.47607 1.50194 1.52539 1.58963 1.63009 2.12962 2.52423 2.76809 3.01841 3.30674 3.46643 3.58545 3.70909 3.79983 3.85574 3.97967 4.02439 4.04198 4.15251 4.20983 4.23561 4.37515 4.39818 4.42793 4.58976 4.69993 4.70926 4.71023 4.85504 4.87781 4.91577 5.02877 5.04809 5.10078 5.12579 5.15948 5.16030 5.25219 5.39267 5.55088 5.60663 5.68212 6.33781 6.70014 6.73595 7.09924 7.15494 7.81340 8.35949 9.21791 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.002423 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.911331 B =11551.003140 C =11851.201256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.114 3.886 12 H 0.137 0.863 13 C -0.104 4.104 14 C -0.106 4.106 15 C 0.109 3.891 16 H 0.070 0.930 17 C 0.191 3.809 18 N -0.607 5.607 19 C 0.530 3.470 20 O -0.593 6.593 21 C -0.053 4.053 22 C 0.075 3.925 23 C -0.265 4.265 24 S 0.158 5.842 25 C 0.069 3.931 26 C -0.108 4.108 27 C -0.147 4.147 28 C -0.161 4.161 29 N -0.494 5.494 30 H 0.246 0.754 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.071 0.929 37 H -0.022 1.022 38 H 0.060 0.940 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.183 0.817 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -24.010 3.179 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.794 3.206 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.006 3.994 11 C 0.011 3.989 12 H 0.154 0.846 13 C -0.142 4.142 14 C -0.145 4.145 15 C 0.004 3.996 16 H 0.088 0.912 17 C 0.065 3.935 18 N -0.339 5.339 19 C 0.320 3.680 20 O -0.475 6.475 21 C -0.095 4.095 22 C -0.056 4.056 23 C -0.404 4.404 24 S 0.414 5.586 25 C -0.208 4.208 26 C -0.130 4.130 27 C -0.185 4.185 28 C -0.199 4.199 29 N -0.209 5.209 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.089 0.911 37 H -0.004 1.004 38 H 0.078 0.922 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.201 0.799 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.153 0.847 45 H 0.144 0.856 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.797 -24.362 3.391 24.662 hybrid contribution 0.429 2.486 -0.293 2.540 sum -1.368 -21.876 3.098 22.136 Atomic orbital electron populations 1.70217 1.06917 1.25602 1.56396 1.25772 0.95851 1.01571 1.01926 0.85304 0.78216 0.79751 0.77344 1.21551 1.22782 1.18826 1.19558 0.92993 0.85279 1.39844 0.90179 1.44555 1.31634 1.02116 1.54236 1.21690 0.98624 0.85649 0.93460 1.23134 0.80609 1.00455 0.94719 0.84593 1.22303 0.96992 0.98975 0.95931 1.22236 0.93009 1.01023 0.98186 1.22863 0.98789 0.83391 0.94521 0.91202 1.21055 0.87322 0.95630 0.89535 1.49259 1.16471 1.15372 1.52803 1.20588 0.83057 0.84060 0.80264 1.90656 1.24211 1.82162 1.50446 1.20165 0.96776 0.89250 1.03308 1.19628 0.97966 0.95661 0.92387 1.27047 0.99039 1.06013 1.08306 1.83423 1.25387 1.23767 1.26027 1.26599 0.93607 1.00372 1.00231 1.20578 0.96007 0.95222 1.01197 1.23284 0.97529 0.98209 0.99503 1.23254 0.96472 1.02102 0.98115 1.65919 1.24148 1.05985 1.24799 0.94451 0.89838 0.97343 0.90209 0.89335 0.91685 0.91055 1.00437 0.92182 0.84982 0.85188 0.79933 0.84462 0.88259 0.84702 0.85617 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.28 11.12 21.65 0.24 -56.04 16 2 C -0.06 -3.09 4.94 84.86 0.42 -2.67 16 3 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.25 -12.67 9.64 84.03 0.81 -11.86 16 8 H 0.08 3.87 7.87 -2.91 -0.02 3.84 16 9 N -0.60 -28.36 2.31 -692.17 -1.60 -29.96 16 10 C 0.13 4.81 6.03 86.55 0.52 5.33 16 11 C 0.11 3.30 3.97 45.47 0.18 3.48 16 12 H 0.14 2.70 7.46 -2.39 -0.02 2.68 16 13 C -0.10 -2.89 6.18 31.55 0.20 -2.69 16 14 C -0.11 -3.59 6.18 31.55 0.20 -3.39 16 15 C 0.11 4.44 4.07 45.44 0.19 4.62 16 16 H 0.07 3.02 7.93 -2.38 -0.02 3.00 16 17 C 0.19 9.51 4.64 86.29 0.40 9.92 16 18 N -0.61 -21.60 2.76 -756.52 -2.08 -23.68 16 19 C 0.53 19.37 7.92 87.66 0.69 20.07 16 20 O -0.59 -27.09 16.35 -3.04 -0.05 -27.14 16 21 C -0.05 -1.42 5.11 29.10 0.15 -1.27 16 22 C 0.08 2.22 5.23 41.52 0.22 2.44 16 23 C -0.26 -7.16 11.14 66.78 0.74 -6.42 16 24 S 0.16 3.47 21.94 -56.49 -1.24 2.23 16 25 C 0.07 1.70 7.04 88.52 0.62 2.33 16 26 C -0.11 -1.88 6.33 -11.54 -0.07 -1.96 16 27 C -0.15 -1.61 10.02 30.62 0.31 -1.30 16 28 C -0.16 -2.22 10.24 30.62 0.31 -1.91 16 29 N -0.49 -14.81 10.53 -179.40 -1.89 -16.70 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.08 2.73 7.96 -2.39 -0.02 2.71 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.08 2.32 7.84 -2.39 -0.02 2.30 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 2.47 7.83 -2.39 -0.02 2.45 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H -0.02 -1.30 8.14 -2.38 -0.02 -1.32 16 38 H 0.06 3.34 6.33 -2.39 -0.02 3.33 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.13 2.87 8.05 -2.39 -0.02 2.85 16 41 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.14 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.10 1.08 7.23 -2.39 -0.02 1.06 16 44 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.35 382.73 2.27 -73.08 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.98 Total: 17.55 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.88 Total: 14.71 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.33 Total: -126.37 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.24 Total: 2.23 kcal Total: -75.35 2.27 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018032798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.195 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds