Wall clock time and date at job start Wed Apr 1 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.48413 * 36.21213 * 10 9 7 12 12 C 1.55060 * 110.53384 * 273.54511 * 10 9 7 13 13 C 1.55059 * 102.10843 * 201.33176 * 12 10 9 14 14 C 1.54323 * 103.93816 * 40.05675 * 13 12 10 15 15 H 1.09003 * 111.69114 * 97.20295 * 14 13 12 16 16 C 1.53771 * 109.06529 * 221.16488 * 14 13 12 17 17 N 1.48787 * 105.59718 * 131.96218 * 16 14 13 18 18 C 1.34778 * 126.25948 * 149.12785 * 17 16 14 19 19 O 1.21621 * 119.99938 * 180.53540 * 18 17 16 20 20 C 1.47257 * 119.99798 * 0.53203 * 18 17 16 21 21 N 1.29766 * 125.52853 * 359.69747 * 20 18 17 22 22 C 1.32591 * 116.75425 * 179.85155 * 21 20 18 23 23 C 1.34626 * 114.30977 * 0.41091 * 22 21 20 24 24 S 1.71622 * 109.59915 * 359.80837 * 23 22 21 25 25 C 1.51947 * 110.68280 * 179.82314 * 23 22 21 26 26 C 1.54233 * 104.84583 * 17.40474 * 25 23 22 27 27 C 1.52804 * 136.15204 * 180.02562 * 22 21 20 28 28 C 1.47212 * 107.03399 * 329.57218 * 17 16 14 29 29 C 1.53774 * 106.38316 * 30.86682 * 28 17 16 30 30 H 1.09002 * 112.38809 * 103.14805 * 29 28 17 31 31 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 33 33 H 1.08997 * 110.90183 * 319.53203 * 12 10 9 34 34 H 1.09000 * 110.90223 * 83.09425 * 12 10 9 35 35 H 1.08997 * 110.53778 * 158.67106 * 13 12 10 36 36 H 1.08997 * 110.53474 * 281.44735 * 13 12 10 37 37 H 1.08994 * 110.07636 * 251.65370 * 16 14 13 38 38 H 1.08999 * 110.07756 * 13.20314 * 16 14 13 39 39 H 1.09008 * 110.36088 * 136.24543 * 25 23 22 40 40 H 1.08992 * 110.36360 * 258.44676 * 25 23 22 41 41 H 1.09004 * 110.95366 * 91.61472 * 26 25 23 42 42 H 1.08998 * 110.94633 * 215.29152 * 26 25 23 43 43 H 1.08999 * 110.31314 * 43.85892 * 27 22 21 44 44 H 1.09000 * 110.39585 * 281.72024 * 27 22 21 45 45 H 1.08994 * 110.07735 * 271.63107 * 28 17 16 46 46 H 1.09005 * 110.07257 * 150.09538 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5895 -3.2130 -0.6036 12 6 4.3057 -2.9871 1.4493 13 6 5.5109 -3.9502 1.2932 14 6 6.4499 -3.2149 0.3138 15 1 7.2353 -2.6719 0.8397 16 6 7.0307 -4.2309 -0.6836 17 7 6.8524 -3.6187 -2.0279 18 6 7.6541 -3.7951 -3.0968 19 8 7.4051 -3.2284 -4.1437 20 6 8.8314 -4.6740 -2.9971 21 7 9.1995 -5.3240 -1.9360 22 6 10.2904 -6.0702 -2.0416 23 6 10.8704 -6.0351 -3.2560 24 16 9.9705 -5.0069 -4.2944 25 6 12.1108 -6.9123 -3.2838 26 6 11.9682 -7.8373 -2.0579 27 6 11.0940 -6.9842 -1.1176 28 6 5.6447 -2.7793 -1.9627 29 6 5.5516 -2.2649 -0.5166 30 1 5.8679 -1.2258 -0.4244 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.5481 -2.1671 2.1251 34 1 3.4208 -3.5231 1.7926 35 1 6.0041 -4.1041 2.2529 36 1 5.1878 -4.9018 0.8713 37 1 8.0863 -4.4014 -0.4720 38 1 6.4804 -5.1699 -0.6245 39 1 12.1391 -7.5002 -4.2013 40 1 13.0093 -6.3015 -3.1977 41 1 11.4625 -8.7649 -2.3262 42 1 12.9401 -8.0414 -1.6086 43 1 10.4245 -7.6221 -0.5407 44 1 11.7211 -6.3931 -0.4502 45 1 4.7633 -3.3724 -2.2063 46 1 5.7344 -1.9406 -2.6531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026313373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:56 Heat of formation + Delta-G solvation = 37.735076 kcal Electronic energy + Delta-G solvation = -27918.980820 eV Core-core repulsion = 24128.690132 eV Total energy + Delta-G solvation = -3790.290688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90951 -40.11051 -38.53073 -36.34056 -35.25371 -33.40995 -31.24539 -30.25546 -29.09868 -28.84800 -28.40438 -25.72048 -25.11521 -23.38463 -22.51427 -21.99375 -20.49933 -20.11371 -19.37117 -18.98442 -18.35453 -17.48546 -16.77725 -16.35670 -16.04624 -15.69187 -15.29692 -14.64781 -14.47803 -14.17093 -13.92509 -13.82381 -13.68110 -13.36678 -13.35061 -12.73344 -12.68599 -12.62941 -12.44863 -12.17206 -11.91578 -11.76190 -11.55719 -11.52080 -11.30599 -10.97787 -10.81021 -10.74885 -10.49519 -10.41940 -10.39685 -10.27207 -9.97501 -9.78114 -9.73025 -9.57506 -9.00219 -8.89092 -8.66316 -7.25131 -5.76282 -3.11899 -0.02371 0.69745 1.41478 1.97208 2.83170 2.98850 3.38782 3.39452 3.41683 3.46920 3.95529 4.14076 4.42866 4.44970 4.59793 4.62424 4.76168 4.86255 4.88685 5.02049 5.11182 5.21329 5.25183 5.32974 5.37233 5.40365 5.49523 5.53595 5.59631 5.61033 5.65771 5.71979 5.85638 5.89948 5.93666 6.01391 6.11620 6.18247 6.27453 6.30406 6.40570 6.58520 6.74730 6.93717 7.12451 7.36809 7.91632 7.99852 8.42950 9.21041 9.93688 10.12959 11.41983 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002415 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.697233 B =11591.156522 C =12423.405113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.189 3.811 11 H 0.065 0.935 12 C -0.141 4.141 13 C -0.116 4.116 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.103 3.897 17 N -0.592 5.592 18 C 0.609 3.391 19 O -0.532 6.532 20 C 0.003 3.997 21 N -0.414 5.414 22 C 0.033 3.967 23 C -0.272 4.272 24 S 0.255 5.745 25 C -0.038 4.038 26 C -0.116 4.116 27 C -0.040 4.040 28 C 0.117 3.883 29 C -0.109 4.109 30 H 0.088 0.912 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.131 -16.972 -3.184 33.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.079 3.921 11 H 0.083 0.917 12 C -0.182 4.182 13 C -0.154 4.154 14 C -0.121 4.121 15 H 0.103 0.897 16 C -0.019 4.019 17 N -0.324 5.324 18 C 0.393 3.607 19 O -0.409 6.409 20 C -0.274 4.274 21 N -0.131 5.131 22 C -0.103 4.103 23 C -0.395 4.395 24 S 0.513 5.487 25 C -0.077 4.077 26 C -0.156 4.156 27 C -0.080 4.080 28 C -0.005 4.005 29 C -0.129 4.129 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.482 -16.285 -4.481 32.257 hybrid contribution 0.779 0.831 0.828 1.408 sum 28.261 -15.454 -3.653 32.417 Atomic orbital electron populations 1.69700 1.05109 1.25808 1.57487 1.24673 0.95222 0.97195 1.02021 0.86565 0.79277 0.85069 0.77707 1.21151 1.21784 1.20281 1.19058 0.80527 0.94686 1.42990 0.89173 1.42801 1.04079 1.01836 1.89990 1.21229 0.88190 0.89162 0.93550 0.91726 1.23247 0.96532 0.98215 1.00173 1.22505 0.96348 0.98450 0.98135 1.22600 0.97691 0.95922 0.95924 0.89732 1.22934 1.03512 0.95656 0.79790 1.48727 1.25975 1.46441 1.11231 1.16277 0.80408 0.80606 0.83420 1.90878 1.72619 1.49225 1.28131 1.27280 1.02590 1.04984 0.92514 1.66071 1.13424 1.06426 1.27222 1.21789 0.92600 1.00447 0.95415 1.26990 1.05729 1.07019 0.99778 1.83897 1.16030 1.36278 1.12454 1.20719 0.92065 0.95056 0.99875 1.22342 1.00588 0.97978 0.94655 1.20901 0.96012 0.95119 0.95966 1.22289 0.85840 0.94592 0.97795 1.22921 0.97536 0.99471 0.92954 0.89382 0.93076 0.80574 0.91616 0.91635 0.92023 0.91489 0.87969 0.90909 0.90074 0.89382 0.90233 0.89358 0.89735 0.89442 0.90153 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.12 27.73 -169.99 -4.71 17.41 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.24 -6.72 10.46 -15.06 -0.16 -6.88 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.11 5.04 -51.70 -0.26 -17.37 16 10 C 0.19 3.45 3.01 -66.15 -0.20 3.25 16 11 H 0.06 1.23 7.17 -51.93 -0.37 0.86 16 12 C -0.14 -2.28 6.60 -24.55 -0.16 -2.45 16 13 C -0.12 -1.44 6.34 -24.95 -0.16 -1.60 16 14 C -0.10 -1.28 3.85 -88.53 -0.34 -1.63 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.10 1.28 6.03 -2.38 -0.01 1.26 16 17 N -0.59 -8.66 3.35 -171.63 -0.58 -9.24 16 18 C 0.61 9.43 7.87 -12.59 -0.10 9.34 16 19 O -0.53 -9.61 17.17 5.26 0.09 -9.52 16 20 C 0.00 0.04 7.32 -14.76 -0.11 -0.07 16 21 N -0.41 -5.00 7.54 -6.78 -0.05 -5.05 16 22 C 0.03 0.33 7.62 -82.49 -0.63 -0.30 16 23 C -0.27 -2.37 7.17 -34.97 -0.25 -2.62 16 24 S 0.26 2.63 23.03 -107.50 -2.48 0.16 16 25 C -0.04 -0.19 6.80 -26.62 -0.18 -0.37 16 26 C -0.12 -0.46 7.11 -25.49 -0.18 -0.64 16 27 C -0.04 -0.24 6.81 -26.23 -0.18 -0.42 16 28 C 0.12 1.82 6.56 -3.25 -0.02 1.80 16 29 C -0.11 -1.67 3.60 -88.53 -0.32 -1.99 16 30 H 0.09 1.40 7.78 -51.93 -0.40 0.99 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.22 5.43 -40.82 -0.22 8.00 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.79 7.20 -51.93 -0.37 0.42 16 37 H 0.10 1.23 5.84 -51.93 -0.30 0.93 16 38 H 0.07 0.87 7.14 -51.93 -0.37 0.50 16 39 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.28 7.13 -51.93 -0.37 0.91 16 46 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.30 374.61 -11.31 -44.61 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.65 Total: 5.11 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.10 Total: -3.28 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.11 Total: -60.13 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.48 Total: 0.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.30 -11.31 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026313373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.342 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds