Wall clock time and date at job start Wed Apr 1 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.48413 * 36.21213 * 10 9 7 12 12 C 1.55060 * 110.53384 * 273.54511 * 10 9 7 13 13 C 1.55059 * 102.10843 * 201.33176 * 12 10 9 14 14 C 1.54323 * 103.93816 * 40.05675 * 13 12 10 15 15 H 1.09003 * 111.69114 * 97.20295 * 14 13 12 16 16 C 1.53771 * 109.06529 * 221.16488 * 14 13 12 17 17 N 1.48787 * 105.59718 * 131.96218 * 16 14 13 18 18 C 1.34778 * 126.25948 * 149.12785 * 17 16 14 19 19 O 1.21621 * 119.99938 * 180.53540 * 18 17 16 20 20 C 1.47257 * 119.99798 * 0.53203 * 18 17 16 21 21 N 1.29766 * 125.52853 * 359.69747 * 20 18 17 22 22 C 1.32591 * 116.75425 * 179.85155 * 21 20 18 23 23 C 1.34626 * 114.30977 * 0.41091 * 22 21 20 24 24 S 1.71622 * 109.59915 * 359.80837 * 23 22 21 25 25 C 1.51947 * 110.68280 * 179.82314 * 23 22 21 26 26 C 1.54233 * 104.84583 * 17.40474 * 25 23 22 27 27 C 1.52804 * 136.15204 * 180.02562 * 22 21 20 28 28 C 1.47212 * 107.03399 * 329.57218 * 17 16 14 29 29 C 1.53774 * 106.38316 * 30.86682 * 28 17 16 30 30 H 1.09002 * 112.38809 * 103.14805 * 29 28 17 31 31 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 33 33 H 1.08997 * 110.90183 * 319.53203 * 12 10 9 34 34 H 1.09000 * 110.90223 * 83.09425 * 12 10 9 35 35 H 1.08997 * 110.53778 * 158.67106 * 13 12 10 36 36 H 1.08997 * 110.53474 * 281.44735 * 13 12 10 37 37 H 1.08994 * 110.07636 * 251.65370 * 16 14 13 38 38 H 1.08999 * 110.07756 * 13.20314 * 16 14 13 39 39 H 1.09008 * 110.36088 * 136.24543 * 25 23 22 40 40 H 1.08992 * 110.36360 * 258.44676 * 25 23 22 41 41 H 1.09004 * 110.95366 * 91.61472 * 26 25 23 42 42 H 1.08998 * 110.94633 * 215.29152 * 26 25 23 43 43 H 1.08999 * 110.31314 * 43.85892 * 27 22 21 44 44 H 1.09000 * 110.39585 * 281.72024 * 27 22 21 45 45 H 1.08994 * 110.07735 * 271.63107 * 28 17 16 46 46 H 1.09005 * 110.07257 * 150.09538 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5895 -3.2130 -0.6036 12 6 4.3057 -2.9871 1.4493 13 6 5.5109 -3.9502 1.2932 14 6 6.4499 -3.2149 0.3138 15 1 7.2353 -2.6719 0.8397 16 6 7.0307 -4.2309 -0.6836 17 7 6.8524 -3.6187 -2.0279 18 6 7.6541 -3.7951 -3.0968 19 8 7.4051 -3.2284 -4.1437 20 6 8.8314 -4.6740 -2.9971 21 7 9.1995 -5.3240 -1.9360 22 6 10.2904 -6.0702 -2.0416 23 6 10.8704 -6.0351 -3.2560 24 16 9.9705 -5.0069 -4.2944 25 6 12.1108 -6.9123 -3.2838 26 6 11.9682 -7.8373 -2.0579 27 6 11.0940 -6.9842 -1.1176 28 6 5.6447 -2.7793 -1.9627 29 6 5.5516 -2.2649 -0.5166 30 1 5.8679 -1.2258 -0.4244 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.5481 -2.1671 2.1251 34 1 3.4208 -3.5231 1.7926 35 1 6.0041 -4.1041 2.2529 36 1 5.1878 -4.9018 0.8713 37 1 8.0863 -4.4014 -0.4720 38 1 6.4804 -5.1699 -0.6245 39 1 12.1391 -7.5002 -4.2013 40 1 13.0093 -6.3015 -3.1977 41 1 11.4625 -8.7649 -2.3262 42 1 12.9401 -8.0414 -1.6086 43 1 10.4245 -7.6221 -0.5407 44 1 11.7211 -6.3931 -0.4502 45 1 4.7633 -3.3724 -2.2063 46 1 5.7344 -1.9406 -2.6531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026313373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:55 Heat of formation + Delta-G solvation = 16.924986 kcal Electronic energy + Delta-G solvation = -27919.883213 eV Core-core repulsion = 24128.690132 eV Total energy + Delta-G solvation = -3791.193081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82846 -41.09113 -39.75600 -37.02465 -36.72123 -35.05826 -33.13089 -31.44413 -30.19630 -29.62973 -29.22866 -26.86979 -26.35685 -24.51473 -24.23237 -22.58098 -21.68423 -21.09101 -20.71538 -19.98009 -19.46280 -19.05057 -17.80482 -17.24788 -17.10229 -16.90558 -16.56128 -16.09158 -15.59266 -15.27175 -15.14056 -14.88311 -14.68563 -14.56844 -14.29941 -14.04353 -13.85321 -13.74290 -13.64196 -13.26077 -13.04774 -12.96728 -12.56153 -12.32171 -12.26991 -12.20232 -12.10409 -11.99852 -11.88805 -11.81748 -11.63917 -11.57186 -11.53389 -11.42898 -10.93070 -10.68459 -10.51291 -9.99262 -9.58703 -9.27206 -8.01321 -5.33881 -0.86862 -0.10878 0.65485 1.11327 1.37646 1.40510 1.47534 1.77594 1.96143 2.48753 2.57594 3.22453 3.32350 3.41806 3.47957 3.60396 3.63524 3.84153 3.98179 4.15132 4.16504 4.30965 4.39904 4.41249 4.49701 4.51430 4.54012 4.60189 4.68862 4.74696 4.78420 4.83543 4.89353 4.92937 5.01352 5.02450 5.09358 5.14475 5.22580 5.25599 5.32428 5.36940 5.43865 5.55096 5.79243 6.21123 6.23239 6.32833 6.77902 7.09116 7.85920 8.04124 9.20283 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002415 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.697233 B =11591.156522 C =12423.405113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.223 4.223 8 H 0.057 0.943 9 N -0.749 5.749 10 C 0.179 3.821 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.102 4.102 14 C -0.091 4.091 15 H 0.105 0.895 16 C 0.110 3.890 17 N -0.594 5.594 18 C 0.605 3.395 19 O -0.571 6.571 20 C -0.039 4.039 21 N -0.417 5.417 22 C 0.009 3.991 23 C -0.255 4.255 24 S 0.262 5.738 25 C -0.040 4.040 26 C -0.107 4.107 27 C -0.040 4.040 28 C 0.118 3.882 29 C -0.100 4.100 30 H 0.087 0.913 31 H 0.256 0.744 32 H 0.365 0.635 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.666 -18.569 -2.134 37.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.355 4.355 8 H 0.075 0.925 9 N -0.392 5.392 10 C 0.070 3.930 11 H 0.068 0.932 12 C -0.177 4.177 13 C -0.140 4.140 14 C -0.110 4.110 15 H 0.123 0.877 16 C -0.011 4.011 17 N -0.325 5.325 18 C 0.391 3.609 19 O -0.451 6.451 20 C -0.313 4.313 21 N -0.135 5.135 22 C -0.127 4.127 23 C -0.378 4.378 24 S 0.520 5.480 25 C -0.080 4.080 26 C -0.146 4.146 27 C -0.079 4.079 28 C -0.004 4.004 29 C -0.120 4.120 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.198 0.802 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.088 0.912 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 32.070 -17.926 -3.402 36.897 hybrid contribution -0.553 1.140 0.452 1.346 sum 31.517 -16.786 -2.950 35.830 Atomic orbital electron populations 1.69882 1.07088 1.26506 1.60070 1.25475 0.96075 1.01128 1.03034 0.85441 0.78587 0.79894 0.78048 1.20324 1.22634 1.17863 1.19005 0.82598 0.93306 1.40548 0.92474 1.42809 1.02474 1.03796 1.90084 1.21467 0.89309 0.86964 0.95214 0.93178 1.23098 0.97897 0.98878 0.97865 1.22443 0.94408 0.97561 0.99559 1.22602 0.97542 0.95299 0.95582 0.87718 1.23004 1.04194 0.95564 0.78369 1.48777 1.25408 1.46246 1.12074 1.16639 0.80931 0.80426 0.82873 1.90835 1.73836 1.50945 1.29476 1.26765 1.03313 1.06953 0.94265 1.66009 1.14230 1.06194 1.27038 1.22483 0.92338 1.00923 0.96978 1.27608 1.06142 1.05424 0.98659 1.83846 1.15554 1.36535 1.12093 1.21005 0.90690 0.94993 1.01298 1.22395 1.01551 0.97278 0.93400 1.21097 0.95971 0.94832 0.96027 1.22128 0.86308 0.94221 0.97778 1.22764 0.95941 1.00262 0.93053 0.89424 0.93482 0.80192 0.91952 0.93073 0.89188 0.90621 0.87008 0.90263 0.88619 0.87569 0.89823 0.86647 0.89396 0.88305 0.91165 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.93 13.97 21.65 0.30 -63.62 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.95 46.30 27.73 68.60 1.90 48.20 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 6 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.22 -12.74 10.46 84.04 0.88 -11.86 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.75 -34.62 5.04 -317.49 -1.60 -36.22 16 10 C 0.18 6.55 3.01 46.15 0.14 6.69 16 11 H 0.05 1.98 7.17 -2.39 -0.02 1.96 16 12 C -0.14 -4.30 6.60 32.00 0.21 -4.09 16 13 C -0.10 -2.24 6.34 31.75 0.20 -2.04 16 14 C -0.09 -2.07 3.85 -9.44 -0.04 -2.10 16 15 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 16 C 0.11 2.52 6.03 86.20 0.52 3.04 16 17 N -0.59 -17.37 3.35 -815.15 -2.73 -20.10 16 18 C 0.61 19.14 7.87 86.61 0.68 19.82 16 19 O -0.57 -21.54 17.17 -4.10 -0.07 -21.61 16 20 C -0.04 -1.01 7.32 87.37 0.64 -0.37 16 21 N -0.42 -9.45 7.54 -175.37 -1.32 -10.77 16 22 C 0.01 0.15 7.62 42.30 0.32 0.47 16 23 C -0.26 -3.80 7.17 25.26 0.18 -3.62 16 24 S 0.26 5.20 23.03 -56.49 -1.30 3.90 16 25 C -0.04 -0.25 6.80 30.67 0.21 -0.04 16 26 C -0.11 -0.37 7.11 31.40 0.22 -0.15 16 27 C -0.04 -0.34 6.81 30.92 0.21 -0.13 16 28 C 0.12 3.78 6.56 86.50 0.57 4.34 16 29 C -0.10 -2.99 3.60 -9.44 -0.03 -3.03 16 30 H 0.09 2.67 7.78 -2.39 -0.02 2.65 16 31 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 32 H 0.36 16.29 5.43 -92.71 -0.50 15.78 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.58 7.20 -2.39 -0.02 1.56 16 37 H 0.11 2.43 5.84 -2.39 -0.01 2.42 16 38 H 0.08 1.74 7.14 -2.39 -0.02 1.72 16 39 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 40 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 2.35 7.13 -2.39 -0.02 2.34 16 46 H 0.07 2.29 7.92 -2.38 -0.02 2.28 16 Total: -1.00 -76.04 374.61 1.01 -75.02 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.45 Total: 21.71 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.38 Total: 3.48 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.35 Total: -130.71 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.07 Total: -21.61 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.30 Total: 3.90 kcal Total: -76.04 1.01 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026313373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.950 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds