Wall clock time and date at job start Wed Apr 1 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48505 * 109.47151 * 239.99946 * 3 2 1 5 5 H 1.48492 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47136 * 120.00322 * 3 2 1 7 7 C 1.38806 * 119.99495 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99741 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.47662 * 134.45889 * 179.97438 * 9 7 2 11 11 C 1.53509 * 85.98071 * 204.29717 * 10 9 7 12 12 C 1.47672 * 134.45661 * 359.97438 * 9 7 2 13 13 C 1.52673 * 113.57039 * 91.01539 * 11 10 9 14 14 C 1.53343 * 109.10924 * 73.81958 * 13 11 10 15 15 N 1.46879 * 108.76618 * 52.40666 * 14 13 11 16 16 C 1.34771 * 120.46887 * 124.47265 * 15 14 13 17 17 O 1.21617 * 120.00145 * 185.66241 * 16 15 14 18 18 C 1.47250 * 120.00004 * 5.66146 * 16 15 14 19 19 N 1.29771 * 125.52827 * 222.05115 * 18 16 15 20 20 C 1.32594 * 116.75481 * 179.97438 * 19 18 16 21 21 C 1.34625 * 114.31091 * 0.03952 * 20 19 18 22 22 S 1.71625 * 109.60065 * 359.93112 * 21 20 19 23 23 C 1.51947 * 110.68644 * 179.90994 * 21 20 19 24 24 C 1.54233 * 104.93891 * 342.54137 * 23 21 20 25 25 C 1.52799 * 136.15443 * 180.02562 * 20 19 18 26 26 C 1.46890 * 119.06324 * 304.74389 * 15 14 13 27 27 C 1.52671 * 113.56746 * 222.23529 * 11 10 9 28 28 H 0.97001 * 119.99664 * 359.97438 * 1 2 3 29 29 H 1.09005 * 113.78731 * 90.03613 * 10 9 7 30 30 H 1.08998 * 113.79485 * 318.56722 * 10 9 7 31 31 H 1.09007 * 113.78726 * 41.42639 * 12 9 7 32 32 H 1.09001 * 113.78890 * 269.96911 * 12 9 7 33 33 H 1.08995 * 109.53614 * 313.93315 * 13 11 10 34 34 H 1.08995 * 109.59409 * 193.73946 * 13 11 10 35 35 H 1.09000 * 109.58753 * 292.61682 * 14 13 11 36 36 H 1.09003 * 109.58393 * 172.18980 * 14 13 11 37 37 H 1.09003 * 110.35925 * 101.43094 * 23 21 20 38 38 H 1.08994 * 110.36426 * 223.64106 * 23 21 20 39 39 H 1.08996 * 110.95565 * 144.72624 * 24 23 21 40 40 H 1.09006 * 110.94989 * 268.44351 * 24 23 21 41 41 H 1.09004 * 110.30900 * 316.46370 * 25 20 19 42 42 H 1.08997 * 110.31234 * 78.64808 * 25 20 19 43 43 H 1.09002 * 109.58345 * 175.04412 * 26 15 14 44 44 H 1.08999 * 109.58663 * 295.47783 * 26 15 14 45 45 H 1.08993 * 109.53268 * 46.07662 * 27 11 10 46 46 H 1.09002 * 109.53233 * 166.22701 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7211 -3.8107 -0.0015 11 6 0.3471 -4.0807 -0.6306 12 6 -0.1045 -2.7567 0.0004 13 6 0.3595 -4.0575 -2.1571 14 6 1.0357 -5.3334 -2.6731 15 7 0.3902 -6.4958 -2.0489 16 6 -0.1327 -7.4776 -2.8098 17 8 -0.7549 -8.3839 -2.2899 18 6 0.0494 -7.4529 -4.2708 19 7 -0.8627 -7.7361 -5.1494 20 6 -0.5083 -7.6569 -6.4246 21 6 0.7712 -7.2880 -6.6223 22 16 1.5378 -7.0340 -5.1080 23 6 1.0886 -7.2259 -8.1070 24 6 -0.0353 -8.0334 -8.7879 25 6 -1.1897 -7.8812 -7.7737 26 6 0.3173 -6.5702 -0.5837 27 6 -0.3583 -5.3056 -0.0538 28 1 -0.4850 0.8401 0.0004 29 1 1.8391 -4.2349 0.9957 30 1 2.5588 -4.0337 -0.6622 31 1 -0.7175 -2.1420 -0.6588 32 1 -0.5293 -2.8674 0.9981 33 1 0.9139 -3.1856 -2.5039 34 1 -0.6636 -4.0110 -2.5303 35 1 2.0935 -5.3180 -2.4108 36 1 0.9264 -5.3925 -3.7560 37 1 1.0773 -6.1928 -8.4544 38 1 2.0581 -7.6821 -8.3070 39 1 -0.3003 -7.5970 -9.7509 40 1 0.2498 -9.0794 -8.9009 41 1 -1.7914 -8.7897 -7.7473 42 1 -1.8100 -7.0229 -8.0317 43 1 -0.2649 -7.4439 -0.2908 44 1 1.3235 -6.6437 -0.1711 45 1 -0.2936 -5.2848 1.0340 46 1 -1.4054 -5.2995 -0.3567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035748131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:46 Heat of formation + Delta-G solvation = 57.009118 kcal Electronic energy + Delta-G solvation = -28313.579428 eV Core-core repulsion = 24524.124526 eV Total energy + Delta-G solvation = -3789.454903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88305 -41.23389 -40.08147 -37.24558 -36.86173 -34.45247 -32.70428 -31.95578 -29.84469 -29.52481 -28.61919 -26.83517 -26.44038 -24.88375 -24.41789 -23.12342 -22.40306 -21.33339 -19.91682 -19.60027 -18.76314 -18.65982 -17.97089 -17.24185 -16.92548 -16.84623 -16.32184 -16.12855 -15.62861 -15.44896 -15.15681 -14.99857 -14.84010 -14.51384 -14.24580 -14.13459 -13.77610 -13.75412 -13.59382 -13.17734 -13.03141 -12.92647 -12.80632 -12.66444 -12.31915 -12.22709 -12.21073 -12.12480 -11.95253 -11.81378 -11.63347 -11.52778 -11.16399 -10.98710 -10.79796 -10.72804 -10.38491 -9.84659 -9.54205 -8.85136 -7.85793 -5.18037 -0.77873 -0.11167 0.55496 1.14372 1.46500 1.46876 1.49452 1.55488 1.96680 2.50498 2.76990 3.33874 3.34355 3.44337 3.46529 3.59797 3.72154 3.94770 4.04325 4.08374 4.13837 4.26904 4.33242 4.38359 4.46226 4.52391 4.59883 4.69993 4.73219 4.79974 4.82023 4.82787 4.86810 4.93001 5.04045 5.08584 5.14029 5.16148 5.17348 5.29074 5.29326 5.31967 5.39381 5.61379 5.72671 5.98743 6.03230 6.47794 6.77942 6.96388 7.66608 8.63415 9.30827 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.002803 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.826376 B = 9987.396807 C =11177.219538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.085 0.915 9 N -0.637 5.637 10 C 0.131 3.869 11 C -0.084 4.084 12 C 0.168 3.832 13 C -0.090 4.090 14 C 0.105 3.895 15 N -0.588 5.588 16 C 0.598 3.402 17 O -0.551 6.551 18 C -0.030 4.030 19 N -0.438 5.438 20 C 0.002 3.998 21 C -0.256 4.256 22 S 0.257 5.743 23 C -0.040 4.040 24 C -0.105 4.105 25 C -0.044 4.044 26 C 0.120 3.880 27 C -0.111 4.111 28 H 0.245 0.755 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.012 0.988 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -17.484 -17.579 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.363 5.363 10 C 0.007 3.993 11 C -0.085 4.085 12 C 0.042 3.958 13 C -0.128 4.128 14 C -0.018 4.018 15 N -0.320 5.320 16 C 0.382 3.618 17 O -0.429 6.429 18 C -0.306 4.306 19 N -0.154 5.154 20 C -0.133 4.133 21 C -0.379 4.379 22 S 0.514 5.486 23 C -0.080 4.080 24 C -0.144 4.144 25 C -0.084 4.084 26 C -0.001 4.001 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.020 -17.472 -16.693 24.680 hybrid contribution -0.859 1.227 0.135 1.504 sum 4.161 -16.245 -16.558 23.566 Atomic orbital electron populations 1.70017 1.06461 1.25364 1.58627 1.25570 0.96420 1.00734 1.03474 0.85216 0.77126 0.79126 0.78268 1.19955 1.22557 1.20614 1.19382 0.90806 0.83414 1.41981 0.89746 1.46321 1.03288 1.00635 1.86047 1.22776 0.95422 0.83384 0.97725 1.22110 0.96977 0.94244 0.95215 1.22144 0.87191 0.90789 0.95648 1.21362 1.00545 0.97092 0.93802 1.22191 0.98221 0.83440 0.97907 1.47974 1.56500 1.19866 1.07702 1.16945 0.78745 0.82431 0.83670 1.90783 1.41388 1.37386 1.73331 1.26807 0.94959 1.10908 0.97934 1.65711 1.34687 1.13227 1.01790 1.22411 0.94467 1.04536 0.91851 1.27585 0.99467 1.06248 1.04588 1.83565 1.12474 1.58592 0.93952 1.21000 1.01332 1.03228 0.82406 1.22440 0.92026 1.01618 0.98283 1.21165 0.98608 1.03597 0.84988 1.21700 1.02962 0.98727 0.76671 1.21685 0.99183 0.92805 1.01287 0.94571 0.93426 0.92074 0.94699 0.97012 0.91045 0.92844 0.87932 0.89421 0.87597 0.88095 0.86563 0.89573 0.89980 0.88758 0.89027 0.88278 0.89162 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.70 11.39 21.65 0.25 -57.45 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.23 -12.38 10.70 84.03 0.90 -11.48 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.64 -31.24 3.53 -722.70 -2.55 -33.79 16 10 C 0.13 4.75 7.73 86.32 0.67 5.42 16 11 C -0.08 -2.89 0.77 -52.04 -0.04 -2.93 16 12 C 0.17 7.84 6.64 86.30 0.57 8.41 16 13 C -0.09 -2.87 5.21 30.60 0.16 -2.71 16 14 C 0.11 2.59 5.58 86.42 0.48 3.08 16 15 N -0.59 -15.80 2.95 -823.55 -2.43 -18.23 16 16 C 0.60 18.78 7.66 86.61 0.66 19.44 16 17 O -0.55 -20.90 16.50 -4.09 -0.07 -20.96 16 18 C -0.03 -0.85 6.38 87.37 0.56 -0.29 16 19 N -0.44 -13.48 10.63 -175.37 -1.86 -15.34 16 20 C 0.00 0.05 7.62 42.29 0.32 0.38 16 21 C -0.26 -4.68 7.17 25.26 0.18 -4.50 16 22 S 0.26 5.01 20.27 -56.49 -1.15 3.87 16 23 C -0.04 -0.38 6.79 30.67 0.21 -0.17 16 24 C -0.10 -0.76 7.13 31.49 0.22 -0.53 16 25 C -0.04 -0.63 6.81 31.01 0.21 -0.42 16 26 C 0.12 2.99 6.29 86.26 0.54 3.54 16 27 C -0.11 -3.14 5.24 30.44 0.16 -2.98 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.05 1.63 8.07 -2.38 -0.02 1.61 16 30 H 0.06 1.98 7.41 -2.39 -0.02 1.96 16 31 H 0.03 1.87 7.12 -2.38 -0.02 1.85 16 32 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.07 2.60 8.01 -2.39 -0.02 2.58 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 2.14 7.49 -2.39 -0.02 2.12 16 36 H 0.09 2.02 4.46 -11.57 -0.05 1.97 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 2.37 6.97 -2.39 -0.02 2.35 16 44 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 45 H 0.09 2.38 8.12 -2.39 -0.02 2.37 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.60 374.47 1.45 -75.15 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.95 Total: 8.65 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.28 Total: 10.81 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -6.60 Total: -124.82 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.07 Total: -20.96 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.15 Total: 3.87 kcal Total: -76.60 1.45 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035748131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.158 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds