Wall clock time and date at job start Wed Apr 1 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48500 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47648 * 300.00453 * 3 2 1 6 6 H 1.48504 * 109.46846 * 60.00720 * 3 2 1 7 7 C 1.38809 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.48160 * 126.40357 * 359.97438 * 9 7 2 11 11 C 1.55290 * 107.04421 * 184.94431 * 10 9 7 12 12 C 1.53745 * 101.84017 * 22.48123 * 11 10 9 13 13 H 1.09004 * 111.97724 * 79.22772 * 12 11 10 14 14 C 1.52233 * 114.75023 * 207.23119 * 12 11 10 15 15 N 1.47722 * 106.36084 * 169.59839 * 14 12 11 16 16 C 1.34778 * 119.69069 * 127.91752 * 15 14 12 17 17 O 1.21618 * 120.00273 * 187.41903 * 16 15 14 18 18 C 1.47259 * 119.99833 * 7.41314 * 16 15 14 19 19 N 1.29761 * 125.52506 * 8.35809 * 18 16 15 20 20 C 1.32591 * 116.75436 * 179.97438 * 19 18 16 21 21 C 1.34623 * 114.31101 * 0.04133 * 20 19 18 22 22 S 1.71626 * 109.59703 * 359.94805 * 21 20 19 23 23 C 1.51945 * 110.69035 * 179.90748 * 21 20 19 24 24 C 1.54237 * 104.84780 * 342.63063 * 23 21 20 25 25 C 1.52803 * 136.15938 * 180.08403 * 20 19 18 26 26 C 1.46600 * 120.62205 * 308.18885 * 15 14 12 27 27 C 1.54789 * 110.71660 * 47.76051 * 26 15 14 28 28 C 1.45461 * 126.40667 * 180.02562 * 9 7 2 29 29 H 1.09005 * 109.26983 * 266.18491 * 28 9 7 30 30 H 0.97003 * 120.00024 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.91691 * 304.29174 * 10 9 7 32 32 H 1.09000 * 109.92119 * 65.39342 * 10 9 7 33 33 H 1.09000 * 110.95319 * 264.34659 * 11 10 9 34 34 H 1.08999 * 110.95192 * 140.61423 * 11 10 9 35 35 H 1.08999 * 110.07164 * 50.38441 * 14 12 11 36 36 H 1.09001 * 110.06824 * 288.80419 * 14 12 11 37 37 H 1.09000 * 110.36900 * 223.78686 * 23 21 20 38 38 H 1.09000 * 110.45521 * 101.51699 * 23 21 20 39 39 H 1.08992 * 110.95261 * 268.37831 * 24 23 21 40 40 H 1.09002 * 110.95196 * 144.65417 * 24 23 21 41 41 H 1.09004 * 110.31328 * 316.47215 * 25 20 19 42 42 H 1.08999 * 110.31562 * 78.54765 * 25 20 19 43 43 H 1.09003 * 109.25510 * 167.86085 * 26 15 14 44 44 H 1.09001 * 109.25376 * 287.28449 * 26 15 14 45 45 H 1.08995 * 109.86924 * 189.66442 * 27 26 15 46 46 H 1.09001 * 110.48982 * 68.27043 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1468 -2.5534 0.0005 11 6 -0.4340 -4.0742 0.1280 12 6 0.8689 -4.5893 0.7612 13 1 0.9026 -4.4023 1.8345 14 6 1.2012 -6.0407 0.4441 15 7 2.5830 -6.2639 0.9164 16 6 2.8498 -7.3025 1.7329 17 8 3.9526 -7.4151 2.2331 18 6 1.8059 -8.3009 2.0195 19 7 0.6512 -8.3742 1.4321 20 6 -0.1588 -9.3468 1.8272 21 6 0.3472 -10.1287 2.7993 22 16 1.9223 -9.5869 3.2126 23 6 -0.6461 -11.2102 3.1898 24 6 -2.0009 -10.7201 2.6390 25 6 -1.5602 -9.8317 1.4591 26 6 3.6657 -5.3629 0.5101 27 6 3.2452 -3.8845 0.6922 28 6 1.9078 -3.7211 -0.0005 29 1 1.9891 -4.0782 -1.0272 30 1 -0.4850 0.8401 0.0004 31 1 -0.5795 -2.0214 0.8478 32 1 -0.5642 -2.1704 -0.9307 33 1 -0.5957 -4.5238 -0.8517 34 1 -1.2849 -4.2564 0.7844 35 1 1.1409 -6.2121 -0.6306 36 1 0.5146 -6.7048 0.9691 37 1 -0.6913 -11.3102 4.2742 38 1 -0.3728 -12.1614 2.7329 39 1 -2.5376 -10.1366 3.3870 40 1 -2.6064 -11.5573 2.2917 41 1 -2.2373 -8.9845 1.3497 42 1 -1.5297 -10.4123 0.5370 43 1 4.5461 -5.5601 1.1219 44 1 3.9091 -5.5427 -0.5370 45 1 3.9843 -3.2296 0.2309 46 1 3.1459 -3.6436 1.7506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036771811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:29 Heat of formation + Delta-G solvation = 42.628364 kcal Electronic energy + Delta-G solvation = -28651.416043 eV Core-core repulsion = 24861.337544 eV Total energy + Delta-G solvation = -3790.078499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94190 -40.99703 -39.76233 -37.07420 -36.70456 -34.43780 -33.34910 -31.42779 -30.00192 -29.51871 -29.24637 -26.98649 -26.21017 -24.69179 -23.87659 -22.54078 -21.82786 -21.45649 -20.87429 -20.03788 -19.10485 -18.48342 -17.55196 -17.22781 -17.05713 -16.81732 -16.38180 -16.02907 -15.69151 -15.43503 -15.01600 -14.89826 -14.67258 -14.42435 -14.32726 -14.06864 -13.78101 -13.70260 -13.33551 -13.16065 -13.09903 -12.93616 -12.73078 -12.51969 -12.24302 -12.13587 -12.07606 -11.98572 -11.87116 -11.81313 -11.65250 -11.52612 -11.50475 -11.25790 -10.72719 -10.53033 -10.20931 -9.92078 -9.55189 -8.87415 -7.84071 -5.18208 -0.83973 -0.06752 0.67364 1.12730 1.44933 1.45377 1.55521 1.83968 1.97360 2.49287 2.59749 3.34401 3.38043 3.45919 3.50691 3.82642 3.86633 4.00719 4.02653 4.18159 4.18958 4.24644 4.38432 4.42764 4.46570 4.54638 4.64881 4.68621 4.75499 4.80762 4.81501 4.87243 4.91600 4.99773 5.05896 5.08487 5.15021 5.15811 5.25653 5.34762 5.46613 5.51109 5.56185 5.66200 5.77317 6.10451 6.20721 6.36329 6.82927 7.09678 7.79124 8.47657 9.27852 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.002803 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.570254 B = 9986.301073 C =11092.459085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.230 4.230 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.115 4.115 12 C -0.109 4.109 13 H 0.059 0.941 14 C 0.109 3.891 15 N -0.583 5.583 16 C 0.593 3.407 17 O -0.564 6.564 18 C -0.043 4.043 19 N -0.419 5.419 20 C 0.006 3.994 21 C -0.255 4.255 22 S 0.274 5.726 23 C -0.039 4.039 24 C -0.108 4.108 25 C -0.043 4.043 26 C 0.122 3.878 27 C -0.118 4.118 28 C 0.155 3.845 29 H 0.024 0.976 30 H 0.245 0.755 31 H 0.016 0.984 32 H 0.006 0.994 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -27.814 5.334 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.359 4.359 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.154 4.154 12 C -0.130 4.130 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.313 5.313 16 C 0.378 3.622 17 O -0.444 6.444 18 C -0.316 4.316 19 N -0.137 5.137 20 C -0.129 4.129 21 C -0.378 4.378 22 S 0.531 5.469 23 C -0.079 4.079 24 C -0.147 4.147 25 C -0.082 4.082 26 C 0.000 4.000 27 C -0.158 4.158 28 C 0.048 3.952 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.239 -27.522 5.877 28.232 hybrid contribution -0.303 1.858 -0.574 1.968 sum -2.541 -25.665 5.303 26.330 Atomic orbital electron populations 1.70169 1.06232 1.25004 1.58792 1.25607 0.96582 1.00871 1.03147 0.85065 0.78267 0.79808 0.76576 1.18994 1.21996 1.22195 1.19424 0.90947 0.83495 1.41988 0.89836 1.44525 1.02403 1.00737 1.86419 1.21319 0.83525 0.91790 0.97654 1.22525 0.96585 0.95231 1.01013 1.22494 0.96589 0.95037 0.98873 0.92278 1.22641 0.81411 0.95896 1.01367 1.48135 1.10966 1.25905 1.46317 1.17043 0.85512 0.80929 0.78706 1.90794 1.23873 1.76890 1.52797 1.26951 0.96632 1.04174 1.03853 1.65921 1.01640 1.20325 1.25824 1.22510 1.00681 0.92230 0.97450 1.27578 1.00626 1.06089 1.03529 1.83720 1.08874 1.21119 1.33138 1.20989 0.89902 0.93974 1.02992 1.22392 0.95765 1.00072 0.96439 1.21111 0.86615 0.99922 1.00562 1.21820 0.89375 0.87561 1.01290 1.21920 0.98097 0.95316 1.00426 1.20915 0.93064 0.85396 0.95794 0.95893 0.94563 0.96519 0.97606 0.90191 0.90141 0.90266 0.84182 0.88543 0.87416 0.89961 0.86641 0.89685 0.88305 0.88956 0.89616 0.90691 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 10.43 21.65 0.23 -58.08 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.23 -12.95 9.86 84.03 0.83 -12.12 16 8 H 0.08 4.50 7.18 -2.91 -0.02 4.48 16 9 N -0.62 -32.03 3.35 -669.99 -2.24 -34.28 16 10 C 0.18 9.14 5.45 86.85 0.47 9.61 16 11 C -0.11 -4.23 6.54 31.63 0.21 -4.03 16 12 C -0.11 -3.95 2.86 -9.99 -0.03 -3.98 16 13 H 0.06 2.35 8.11 -2.38 -0.02 2.33 16 14 C 0.11 3.26 5.51 85.89 0.47 3.73 16 15 N -0.58 -18.25 3.00 -820.41 -2.47 -20.72 16 16 C 0.59 18.90 7.64 86.61 0.66 19.57 16 17 O -0.56 -20.18 16.28 -4.09 -0.07 -20.24 16 18 C -0.04 -1.16 7.13 87.37 0.62 -0.53 16 19 N -0.42 -10.57 6.96 -175.38 -1.22 -11.79 16 20 C 0.01 0.13 7.62 42.30 0.32 0.45 16 21 C -0.26 -4.18 7.17 25.26 0.18 -4.00 16 22 S 0.27 5.59 23.04 -56.49 -1.30 4.29 16 23 C -0.04 -0.30 6.80 30.67 0.21 -0.09 16 24 C -0.11 -0.63 7.11 31.40 0.22 -0.40 16 25 C -0.04 -0.49 6.81 30.91 0.21 -0.28 16 26 C 0.12 3.78 6.36 86.97 0.55 4.33 16 27 C -0.12 -4.37 5.52 30.71 0.17 -4.20 16 28 C 0.16 6.42 2.56 45.50 0.12 6.53 16 29 H 0.02 0.97 7.92 -2.38 -0.02 0.95 16 30 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 32 H 0.01 0.32 7.76 -2.39 -0.02 0.30 16 33 H 0.08 2.63 8.12 -2.39 -0.02 2.62 16 34 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 36 H 0.14 4.05 4.27 -21.05 -0.09 3.96 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 2.85 6.92 -2.39 -0.02 2.83 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.07 2.77 7.59 -2.39 -0.02 2.75 16 46 H 0.05 2.04 8.11 -2.39 -0.02 2.02 16 Total: -1.00 -73.07 369.08 1.56 -71.50 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.92 Total: 9.51 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.69 Total: 11.03 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -5.70 Total: -124.87 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.07 Total: -20.24 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.30 Total: 4.29 kcal Total: -73.07 1.56 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036771811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.132 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds