Wall clock time and date at job start Wed Apr 1 2020 04:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99744 * 2 1 4 4 H 1.48493 * 109.47176 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47071 * 119.99859 * 3 2 1 6 6 H 1.48499 * 109.47303 * 239.99677 * 3 2 1 7 7 C 1.38810 * 120.00404 * 180.27545 * 2 1 3 8 8 H 1.07996 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05841 * 359.68918 * 9 7 2 11 11 C 1.54525 * 107.13930 * 178.23026 * 10 9 7 12 12 C 1.56028 * 102.70343 * 337.53776 * 11 10 9 13 13 H 1.09001 * 112.86326 * 156.84537 * 12 11 10 14 14 C 1.53095 * 107.07031 * 281.16985 * 12 11 10 15 15 C 1.52843 * 110.57386 * 164.90943 * 14 12 11 16 16 N 1.47151 * 107.97932 * 302.64963 * 15 14 12 17 17 C 1.34770 * 121.21505 * 237.31098 * 16 15 14 18 18 O 1.21618 * 120.00008 * 175.12046 * 17 16 15 19 19 C 1.47261 * 120.00065 * 355.11614 * 17 16 15 20 20 N 1.29763 * 125.52301 * 138.29338 * 19 17 16 21 21 C 1.32597 * 116.75390 * 179.97438 * 20 19 17 22 22 C 1.34628 * 114.30897 * 0.04224 * 21 20 19 23 23 S 1.71627 * 109.59569 * 359.67158 * 22 21 20 24 24 C 1.51942 * 110.68709 * 179.97438 * 22 21 20 25 25 C 1.54229 * 104.84824 * 342.61883 * 24 22 21 26 26 C 1.52791 * 136.15899 * 180.08611 * 21 20 19 27 27 C 1.44086 * 117.56049 * 56.70029 * 16 15 14 28 28 C 1.46467 * 126.06479 * 180.02562 * 9 7 2 29 29 H 1.08992 * 108.42476 * 90.10103 * 28 9 7 30 30 H 0.97000 * 120.00560 * 359.72703 * 1 2 3 31 31 H 1.08997 * 109.90513 * 297.75328 * 10 9 7 32 32 H 1.08998 * 109.90370 * 58.99480 * 10 9 7 33 33 H 1.08992 * 110.92927 * 219.13908 * 11 10 9 34 34 H 1.09000 * 110.70710 * 95.83321 * 11 10 9 35 35 H 1.08998 * 109.25295 * 285.18974 * 14 12 11 36 36 H 1.08991 * 109.25574 * 44.62336 * 14 12 11 37 37 H 1.08996 * 109.75887 * 62.27001 * 15 14 12 38 38 H 1.08999 * 109.75607 * 182.97895 * 15 14 12 39 39 H 1.09002 * 110.36743 * 223.77628 * 24 22 21 40 40 H 1.09002 * 110.36374 * 101.45966 * 24 22 21 41 41 H 1.08997 * 110.95419 * 268.38023 * 25 24 22 42 42 H 1.09006 * 110.98466 * 144.67463 * 25 24 22 43 43 H 1.09001 * 110.31283 * 316.45553 * 26 21 20 44 44 H 1.08997 * 110.31584 * 78.53960 * 26 21 20 45 45 H 1.09001 * 108.85333 * 187.16851 * 27 16 15 46 46 H 1.09001 * 108.06973 * 68.69272 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0054 9 7 1.3257 -2.3880 -0.0120 10 6 -0.1404 -2.5437 -0.0069 11 6 -0.4376 -4.0591 -0.0630 12 6 0.8723 -4.6432 -0.6773 13 1 1.0219 -5.6951 -0.4340 14 6 0.8108 -4.3940 -2.1866 15 6 2.1884 -4.5879 -2.8196 16 7 3.1279 -3.6733 -2.1518 17 6 3.8310 -2.7609 -2.8514 18 8 4.5340 -1.9575 -2.2687 19 6 3.7481 -2.7367 -4.3215 20 7 3.6648 -1.6692 -5.0545 21 6 3.5994 -1.8497 -6.3665 22 6 3.6289 -3.1396 -6.7507 23 16 3.7542 -4.1492 -5.3684 24 6 3.5490 -3.2510 -8.2639 25 6 3.0224 -1.8797 -8.7339 26 6 3.4968 -0.9519 -7.5986 27 6 3.2587 -3.7799 -0.7208 28 6 1.9200 -3.7267 -0.0180 29 1 2.0573 -4.0472 1.0146 30 1 -0.4851 0.8400 0.0040 31 1 -0.5559 -2.1154 0.9052 32 1 -0.5690 -2.0512 -0.8797 33 1 -1.2922 -4.2647 -0.7075 34 1 -0.6058 -4.4562 0.9381 35 1 0.1063 -5.0927 -2.6378 36 1 0.4716 -3.3744 -2.3691 37 1 2.5158 -5.6183 -2.6811 38 1 2.1409 -4.3563 -3.8836 39 1 2.8556 -4.0419 -8.5500 40 1 4.5370 -3.4417 -8.6829 41 1 1.9347 -1.8831 -8.8044 42 1 3.4718 -1.5940 -9.6850 43 1 2.7698 -0.1578 -7.4287 44 1 4.4712 -0.5269 -7.8393 45 1 3.8848 -2.9628 -0.3624 46 1 3.7448 -4.7292 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042153934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:21 Heat of formation + Delta-G solvation = 56.169861 kcal Electronic energy + Delta-G solvation = -29572.684365 eV Core-core repulsion = 25783.193069 eV Total energy + Delta-G solvation = -3789.491296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.57114 -39.92309 -38.06499 -35.93619 -35.16440 -32.84052 -31.27263 -29.74843 -28.82902 -28.48888 -28.20819 -25.55133 -24.57242 -23.42902 -22.65976 -21.83423 -20.43177 -19.95070 -18.89470 -18.46242 -17.99493 -16.87583 -16.60862 -16.19298 -15.50734 -15.03649 -14.81499 -14.28462 -14.27748 -13.97355 -13.74564 -13.70337 -13.52965 -13.14443 -12.97363 -12.89684 -12.61124 -12.27126 -11.95705 -11.76043 -11.50695 -11.45745 -11.35154 -11.27594 -11.15191 -10.93198 -10.75627 -10.60663 -10.16330 -10.08657 -9.85686 -9.81693 -9.64002 -9.48554 -9.37758 -9.29781 -8.53529 -8.45764 -8.23365 -6.71699 -5.57808 -2.89964 0.37895 1.00180 1.61364 2.46563 2.81052 3.52377 3.55975 3.58451 3.67381 3.90978 4.22545 4.47446 4.65605 4.67525 4.78402 4.99420 5.08160 5.16226 5.27646 5.30951 5.37375 5.46825 5.47900 5.52811 5.57999 5.66315 5.72297 5.73254 5.76870 5.85430 5.94872 5.98675 6.02866 6.11620 6.23358 6.30968 6.43049 6.47221 6.62393 6.71709 6.91724 7.04512 7.53244 7.66342 7.68955 7.72827 7.96904 8.36196 8.41526 9.35415 9.96548 10.59564 11.54476 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.004426 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.935119 B = 6324.274446 C = 7570.209690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.082 0.918 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.143 4.143 12 C -0.102 4.102 13 H 0.077 0.923 14 C -0.121 4.121 15 C 0.097 3.903 16 N -0.577 5.577 17 C 0.600 3.400 18 O -0.491 6.491 19 C 0.035 3.965 20 N -0.398 5.398 21 C 0.040 3.960 22 C -0.271 4.271 23 S 0.180 5.820 24 C -0.035 4.035 25 C -0.116 4.116 26 C -0.043 4.043 27 C 0.112 3.888 28 C 0.154 3.846 29 H 0.032 0.968 30 H 0.249 0.751 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -14.141 -15.866 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.315 5.315 10 C 0.054 3.946 11 C -0.181 4.181 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.026 4.026 16 N -0.310 5.310 17 C 0.382 3.618 18 O -0.364 6.364 19 C -0.245 4.245 20 N -0.112 5.112 21 C -0.096 4.096 22 C -0.393 4.393 23 S 0.438 5.562 24 C -0.074 4.074 25 C -0.155 4.155 26 C -0.082 4.082 27 C -0.012 4.012 28 C 0.045 3.955 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.308 -14.012 -15.040 21.002 hybrid contribution 0.200 1.685 -0.557 1.785 sum 4.508 -12.327 -15.597 20.385 Atomic orbital electron populations 1.69944 1.04813 1.24854 1.57831 1.24676 0.95549 0.97456 1.02376 0.86296 0.78583 0.83423 0.78279 1.21891 1.21265 1.20763 1.18986 0.90575 0.81991 1.42807 0.90075 1.44295 1.01403 0.99226 1.86532 1.21223 0.84330 0.88234 1.00847 1.23153 0.95981 0.99751 0.99239 1.22383 0.97395 0.97895 0.94491 0.90501 1.21791 0.95009 1.03577 0.95509 1.22020 0.90448 0.93275 0.96896 1.46914 1.41162 1.34782 1.08127 1.16534 0.81351 0.81126 0.82810 1.90852 1.40207 1.36773 1.68560 1.27280 1.08483 0.89736 0.99002 1.65743 1.11043 1.30347 1.04083 1.21789 1.03772 0.94008 0.89984 1.26802 1.10807 0.98592 1.03122 1.83617 1.66301 1.11121 0.95171 1.20680 1.02203 0.98877 0.85663 1.22326 1.01807 0.93416 0.97941 1.20902 1.02947 0.96698 0.87669 1.21051 0.99733 1.01917 0.78469 1.20733 0.90841 0.88031 0.95850 0.95080 0.94040 0.94075 0.93711 0.92310 0.92638 0.91670 0.90038 0.90833 0.90569 0.90180 0.89627 0.90227 0.89463 0.89683 0.89493 0.88336 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 10.38 55.49 0.58 -27.60 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.90 24.34 29.55 -169.99 -5.02 19.31 16 4 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -7.85 7.11 56.52 0.40 -7.45 16 7 C -0.22 -6.19 9.70 -15.06 -0.15 -6.33 16 8 H 0.08 2.38 6.52 -52.49 -0.34 2.04 16 9 N -0.59 -14.78 3.20 -164.38 -0.53 -15.31 16 10 C 0.18 4.28 4.64 -2.73 -0.01 4.27 16 11 C -0.14 -2.56 6.34 -24.31 -0.15 -2.71 16 12 C -0.10 -1.65 3.63 -88.42 -0.32 -1.97 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.88 5.08 -26.76 -0.14 -2.01 16 15 C 0.10 1.38 5.80 -3.77 -0.02 1.36 16 16 N -0.58 -10.42 2.93 -177.52 -0.52 -10.94 16 17 C 0.60 12.42 7.67 -12.60 -0.10 12.32 16 18 O -0.49 -12.15 16.51 5.26 0.09 -12.06 16 19 C 0.03 0.63 6.44 -14.76 -0.10 0.54 16 20 N -0.40 -7.75 10.63 -6.78 -0.07 -7.82 16 21 C 0.04 0.59 7.62 -82.49 -0.63 -0.03 16 22 C -0.27 -3.34 7.17 -34.97 -0.25 -3.59 16 23 S 0.18 2.27 20.24 -107.50 -2.18 0.09 16 24 C -0.03 -0.28 6.80 -26.63 -0.18 -0.46 16 25 C -0.12 -0.85 7.11 -25.51 -0.18 -1.03 16 26 C -0.04 -0.46 6.80 -26.26 -0.18 -0.64 16 27 C 0.11 2.07 5.52 -6.19 -0.03 2.04 16 28 C 0.15 3.04 3.03 -68.28 -0.21 2.84 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.04 1.11 7.58 -51.93 -0.39 0.71 16 32 H 0.04 1.21 7.10 -51.93 -0.37 0.84 16 33 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.04 4.42 -36.64 -0.16 0.88 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 2.14 5.43 -51.93 -0.28 1.86 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -35.95 365.67 -11.42 -47.37 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.53 Total: -2.89 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.74 Total: 4.34 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.54 Total: -61.67 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.02 Total: 19.31 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.18 Total: 0.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.95 -11.42 -47.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042153934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.537 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds