Wall clock time and date at job start Wed Apr 1 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99744 * 2 1 4 4 H 1.48493 * 109.47176 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47071 * 119.99859 * 3 2 1 6 6 H 1.48499 * 109.47303 * 239.99677 * 3 2 1 7 7 C 1.38810 * 120.00404 * 180.27545 * 2 1 3 8 8 H 1.07996 * 120.00454 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05841 * 359.68918 * 9 7 2 11 11 C 1.54525 * 107.13930 * 178.23026 * 10 9 7 12 12 C 1.56028 * 102.70343 * 337.53776 * 11 10 9 13 13 H 1.09001 * 112.86326 * 156.84537 * 12 11 10 14 14 C 1.53095 * 107.07031 * 281.16985 * 12 11 10 15 15 C 1.52843 * 110.57386 * 164.90943 * 14 12 11 16 16 N 1.47151 * 107.97932 * 302.64963 * 15 14 12 17 17 C 1.34770 * 121.21505 * 237.31098 * 16 15 14 18 18 O 1.21618 * 120.00008 * 175.12046 * 17 16 15 19 19 C 1.47261 * 120.00065 * 355.11614 * 17 16 15 20 20 N 1.29763 * 125.52301 * 138.29338 * 19 17 16 21 21 C 1.32597 * 116.75390 * 179.97438 * 20 19 17 22 22 C 1.34628 * 114.30897 * 0.04224 * 21 20 19 23 23 S 1.71627 * 109.59569 * 359.67158 * 22 21 20 24 24 C 1.51942 * 110.68709 * 179.97438 * 22 21 20 25 25 C 1.54229 * 104.84824 * 342.61883 * 24 22 21 26 26 C 1.52791 * 136.15899 * 180.08611 * 21 20 19 27 27 C 1.44086 * 117.56049 * 56.70029 * 16 15 14 28 28 C 1.46467 * 126.06479 * 180.02562 * 9 7 2 29 29 H 1.08992 * 108.42476 * 90.10103 * 28 9 7 30 30 H 0.97000 * 120.00560 * 359.72703 * 1 2 3 31 31 H 1.08997 * 109.90513 * 297.75328 * 10 9 7 32 32 H 1.08998 * 109.90370 * 58.99480 * 10 9 7 33 33 H 1.08992 * 110.92927 * 219.13908 * 11 10 9 34 34 H 1.09000 * 110.70710 * 95.83321 * 11 10 9 35 35 H 1.08998 * 109.25295 * 285.18974 * 14 12 11 36 36 H 1.08991 * 109.25574 * 44.62336 * 14 12 11 37 37 H 1.08996 * 109.75887 * 62.27001 * 15 14 12 38 38 H 1.08999 * 109.75607 * 182.97895 * 15 14 12 39 39 H 1.09002 * 110.36743 * 223.77628 * 24 22 21 40 40 H 1.09002 * 110.36374 * 101.45966 * 24 22 21 41 41 H 1.08997 * 110.95419 * 268.38023 * 25 24 22 42 42 H 1.09006 * 110.98466 * 144.67463 * 25 24 22 43 43 H 1.09001 * 110.31283 * 316.45553 * 26 21 20 44 44 H 1.08997 * 110.31584 * 78.53960 * 26 21 20 45 45 H 1.09001 * 108.85333 * 187.16851 * 27 16 15 46 46 H 1.09001 * 108.06973 * 68.69272 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0054 9 7 1.3257 -2.3880 -0.0120 10 6 -0.1404 -2.5437 -0.0069 11 6 -0.4376 -4.0591 -0.0630 12 6 0.8723 -4.6432 -0.6773 13 1 1.0219 -5.6951 -0.4340 14 6 0.8108 -4.3940 -2.1866 15 6 2.1884 -4.5879 -2.8196 16 7 3.1279 -3.6733 -2.1518 17 6 3.8310 -2.7609 -2.8514 18 8 4.5340 -1.9575 -2.2687 19 6 3.7481 -2.7367 -4.3215 20 7 3.6648 -1.6692 -5.0545 21 6 3.5994 -1.8497 -6.3665 22 6 3.6289 -3.1396 -6.7507 23 16 3.7542 -4.1492 -5.3684 24 6 3.5490 -3.2510 -8.2639 25 6 3.0224 -1.8797 -8.7339 26 6 3.4968 -0.9519 -7.5986 27 6 3.2587 -3.7799 -0.7208 28 6 1.9200 -3.7267 -0.0180 29 1 2.0573 -4.0472 1.0146 30 1 -0.4851 0.8400 0.0040 31 1 -0.5559 -2.1154 0.9052 32 1 -0.5690 -2.0512 -0.8797 33 1 -1.2922 -4.2647 -0.7075 34 1 -0.6058 -4.4562 0.9381 35 1 0.1063 -5.0927 -2.6378 36 1 0.4716 -3.3744 -2.3691 37 1 2.5158 -5.6183 -2.6811 38 1 2.1409 -4.3563 -3.8836 39 1 2.8556 -4.0419 -8.5500 40 1 4.5370 -3.4417 -8.6829 41 1 1.9347 -1.8831 -8.8044 42 1 3.4718 -1.5940 -9.6850 43 1 2.7698 -0.1578 -7.4287 44 1 4.4712 -0.5269 -7.8393 45 1 3.8848 -2.9628 -0.3624 46 1 3.7448 -4.7292 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042153934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:20 Heat of formation + Delta-G solvation = 30.723502 kcal Electronic energy + Delta-G solvation = -29573.787802 eV Core-core repulsion = 25783.193069 eV Total energy + Delta-G solvation = -3790.594733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83214 -41.17497 -39.61488 -36.89251 -36.78436 -34.73365 -32.95601 -31.30013 -30.19913 -29.68501 -29.31829 -26.84232 -26.51073 -24.84697 -24.07434 -22.69276 -21.76421 -21.61343 -20.27327 -19.55811 -19.31550 -18.55547 -18.16739 -17.27482 -16.96057 -16.64850 -16.35508 -16.01547 -15.66057 -15.39168 -15.17900 -14.83763 -14.72655 -14.38685 -14.23852 -14.14228 -13.81617 -13.73733 -13.28958 -13.19400 -13.08489 -13.00758 -12.69579 -12.63974 -12.41751 -12.32610 -12.15688 -12.10885 -11.92037 -11.73751 -11.57356 -11.41105 -11.28473 -11.16107 -10.69991 -10.64446 -10.36282 -9.73679 -9.50179 -8.82413 -7.87305 -5.16167 -0.75584 -0.09061 0.53837 1.19171 1.29077 1.34471 1.42256 1.53114 2.16757 2.44670 2.87924 3.31775 3.37290 3.45787 3.58192 3.80286 3.85385 3.95474 4.08616 4.11814 4.19356 4.35764 4.41336 4.43755 4.50693 4.53219 4.63412 4.71408 4.73494 4.78765 4.80657 4.84906 4.85168 4.97542 5.07385 5.10160 5.14391 5.16587 5.27745 5.27898 5.51170 5.57592 5.64047 5.72061 5.81133 6.18533 6.21722 6.57275 6.95981 7.13404 7.81925 8.43429 9.23180 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.004426 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.935119 B = 6324.274446 C = 7570.209690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.949 3.051 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.303 1.303 7 C -0.202 4.202 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.185 3.815 11 C -0.128 4.128 12 C -0.082 4.082 13 H 0.135 0.865 14 C -0.118 4.118 15 C 0.094 3.906 16 N -0.575 5.575 17 C 0.589 3.411 18 O -0.559 6.559 19 C -0.029 4.029 20 N -0.456 5.456 21 C -0.005 4.005 22 C -0.256 4.256 23 S 0.285 5.715 24 C -0.033 4.033 25 C -0.104 4.104 26 C -0.048 4.048 27 C 0.112 3.888 28 C 0.139 3.861 29 H 0.040 0.960 30 H 0.242 0.758 31 H -0.001 1.001 32 H 0.001 0.999 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.024 0.976 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -19.328 -18.789 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.780 3.220 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.231 1.231 7 C -0.332 4.332 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.166 4.166 12 C -0.101 4.101 13 H 0.152 0.848 14 C -0.157 4.157 15 C -0.028 4.028 16 N -0.307 5.307 17 C 0.372 3.628 18 O -0.437 6.437 19 C -0.306 4.306 20 N -0.172 5.172 21 C -0.140 4.140 22 C -0.378 4.378 23 S 0.542 5.458 24 C -0.073 4.073 25 C -0.143 4.143 26 C -0.087 4.087 27 C -0.011 4.011 28 C 0.033 3.967 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.043 0.957 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.177 -19.275 -17.938 26.660 hybrid contribution 0.281 3.191 0.250 3.213 sum 4.458 -16.084 -17.689 24.320 Atomic orbital electron populations 1.70122 1.05428 1.24482 1.59861 1.25248 0.96328 0.99789 1.04145 0.85576 0.77537 0.81409 0.77510 1.21172 1.20117 1.23101 1.19044 0.90147 0.83889 1.40155 0.91655 1.44496 1.02288 1.00454 1.86079 1.20984 0.83488 0.92744 0.96811 1.23009 0.97963 0.94387 1.01218 1.22463 0.93871 0.99644 0.94167 0.84772 1.21784 0.96708 1.01471 0.95690 1.22390 0.88858 0.94843 0.96726 1.47106 1.40959 1.34599 1.07994 1.17122 0.80748 0.80513 0.84379 1.90783 1.43124 1.39353 1.70439 1.26749 1.12594 0.92815 0.98403 1.65684 1.12045 1.32882 1.06583 1.22417 1.05624 0.96568 0.89356 1.27677 1.06783 0.97676 1.05714 1.82953 1.63567 1.06627 0.92621 1.20994 1.04369 0.99987 0.81940 1.22379 1.02291 0.91912 0.97675 1.21136 1.03215 0.96921 0.87474 1.21013 0.98528 1.02683 0.78909 1.21119 0.92588 0.86032 0.97001 0.94216 0.94877 0.98248 0.98047 0.90026 0.90799 0.87128 0.95688 0.85479 0.90193 0.87433 0.87093 0.89822 0.86188 0.91097 0.88817 0.92816 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.57 10.38 21.65 0.22 -61.35 16 2 C -0.06 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.95 53.48 29.55 68.60 2.03 55.51 16 4 H -0.29 -15.63 7.11 99.48 0.71 -14.93 16 5 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.30 -18.00 7.11 99.48 0.71 -17.29 16 7 C -0.20 -12.40 9.70 84.03 0.82 -11.59 16 8 H 0.07 4.16 6.52 -2.91 -0.02 4.14 16 9 N -0.61 -31.80 3.20 -673.98 -2.16 -33.95 16 10 C 0.18 9.24 4.64 86.72 0.40 9.64 16 11 C -0.13 -4.27 6.34 32.16 0.20 -4.07 16 12 C -0.08 -2.32 3.63 -9.37 -0.03 -2.36 16 13 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.12 -3.29 5.08 30.57 0.16 -3.14 16 15 C 0.09 2.33 5.80 86.20 0.50 2.83 16 16 N -0.58 -20.58 2.93 -833.80 -2.44 -23.02 16 17 C 0.59 25.69 7.67 86.62 0.66 26.35 16 18 O -0.56 -30.26 16.51 -4.09 -0.07 -30.33 16 19 C -0.03 -1.11 6.44 87.37 0.56 -0.54 16 20 N -0.46 -18.80 10.63 -175.38 -1.87 -20.67 16 21 C 0.00 -0.15 7.62 42.29 0.32 0.17 16 22 C -0.26 -5.63 7.17 25.26 0.18 -5.44 16 23 S 0.29 6.38 20.24 -56.49 -1.14 5.23 16 24 C -0.03 -0.38 6.80 30.66 0.21 -0.17 16 25 C -0.10 -1.15 7.11 31.38 0.22 -0.93 16 26 C -0.05 -1.00 6.80 30.90 0.21 -0.79 16 27 C 0.11 4.11 5.52 86.27 0.48 4.58 16 28 C 0.14 5.36 3.03 44.78 0.14 5.50 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 32 H 0.00 0.07 7.10 -2.39 -0.02 0.06 16 33 H 0.08 2.39 7.99 -2.39 -0.02 2.37 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.02 0.98 6.98 -2.39 -0.02 0.97 16 37 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.94 4.42 -12.11 -0.05 1.88 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.05 2.47 5.43 -2.39 -0.01 2.45 16 46 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -93.56 365.67 1.03 -92.54 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 0.96 Total: -0.50 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.49 Total: 16.55 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -6.24 Total: -138.99 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.07 Total: -30.33 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.03 Total: 55.51 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.14 Total: 5.23 kcal Total: -93.56 1.03 -92.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042153934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.259 kcal (2) G-P(sol) polarization free energy of solvation -93.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds