Wall clock time and date at job start Wed Apr 1 2020 04:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99789 * 2 1 4 4 O 1.21645 * 119.99768 * 186.28400 * 3 2 1 5 5 C 1.47057 * 120.00214 * 6.28478 * 3 2 1 6 6 C 1.35873 * 125.42701 * 187.80226 * 5 3 2 7 7 C 1.41585 * 107.73751 * 179.84811 * 6 5 3 8 8 C 1.40127 * 133.34633 * 180.14159 * 7 6 5 9 9 C 1.36614 * 119.81068 * 180.29859 * 8 7 6 10 10 F 1.35097 * 119.72054 * 179.97438 * 9 8 7 11 11 C 1.39133 * 120.56097 * 0.02562 * 9 8 7 12 12 C 1.37658 * 120.62700 * 359.96225 * 11 9 8 13 13 C 1.39220 * 119.84177 * 0.03305 * 12 11 9 14 14 N 1.37572 * 133.15049 * 180.02562 * 13 12 11 15 15 H 0.97003 * 125.60778 * 359.95629 * 14 13 12 16 16 C 1.46498 * 119.99636 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.63617 * 178.30975 * 16 2 1 18 18 C 1.54318 * 110.72192 * 301.45191 * 16 2 1 19 19 N 1.47019 * 107.27197 * 140.73791 * 18 16 2 20 20 C 1.36944 * 125.65069 * 181.08164 * 19 18 16 21 21 H 1.08000 * 119.99886 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99879 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99666 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47048 * 120.00116 * 24 22 20 27 27 H 1.48500 * 109.47082 * 239.99913 * 24 22 20 28 28 C 1.47425 * 108.70301 * 1.05614 * 19 18 16 29 29 C 1.54907 * 104.83251 * 335.87606 * 28 19 18 30 30 H 1.09003 * 111.00553 * 278.93478 * 29 28 19 31 31 O 1.42904 * 111.00669 * 155.08277 * 29 28 19 32 32 H 1.08999 * 109.46950 * 275.81012 * 1 2 3 33 33 H 1.09004 * 109.46984 * 35.80787 * 1 2 3 34 34 H 1.09000 * 109.47252 * 155.81202 * 1 2 3 35 35 H 1.08004 * 126.13023 * 359.96551 * 6 5 3 36 36 H 1.07998 * 120.10022 * 0.31500 * 8 7 6 37 37 H 1.08004 * 119.68614 * 179.97438 * 11 9 8 38 38 H 1.08002 * 120.07895 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.88547 * 21.31666 * 18 16 2 40 40 H 1.09003 * 110.01278 * 260.22392 * 18 16 2 41 41 H 0.97004 * 119.99742 * 180.02562 * 23 22 20 42 42 H 1.09002 * 110.36773 * 94.71080 * 28 19 18 43 43 H 1.08996 * 110.37032 * 217.03312 * 28 19 18 44 44 H 0.96704 * 113.99757 * 61.44931 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1704 -0.1153 5 6 1.4102 2.4369 0.1394 6 6 1.9528 3.6753 0.0046 7 6 0.9212 4.6230 0.2104 8 6 0.8846 6.0237 0.1942 9 6 -0.2902 6.6753 0.4422 10 9 -0.3233 8.0258 0.4267 11 6 -1.4527 5.9599 0.7117 12 6 -1.4402 4.5835 0.7326 13 6 -0.2548 3.8976 0.4827 14 7 0.0665 2.5608 0.4343 15 1 -0.5493 1.8262 0.5829 16 6 2.1975 -1.2688 0.0006 17 1 3.2726 -1.0917 -0.0296 18 6 1.8182 -2.1176 1.2322 19 7 1.7366 -3.5172 0.7895 20 6 1.4048 -4.5860 1.5787 21 1 1.1757 -4.4353 2.6233 22 6 1.3629 -5.8629 1.0361 23 7 1.6416 -6.0464 -0.2372 24 14 0.9096 -7.3207 2.1125 25 1 0.6427 -6.8507 3.4957 26 1 -0.3062 -7.9780 1.5693 27 1 2.0324 -8.2924 2.1285 28 6 2.0705 -3.5794 -0.6451 29 6 1.7549 -2.1631 -1.1875 30 1 0.6892 -2.0494 -1.3863 31 8 2.5252 -1.8791 -2.3572 32 1 -0.3633 0.1040 1.0224 33 1 -0.3633 0.8335 -0.6013 34 1 -0.3634 -0.9374 -0.4211 35 1 2.9855 3.8970 -0.2211 36 1 1.7825 6.5866 -0.0139 37 1 -2.3737 6.4895 0.9062 38 1 -2.3479 4.0371 0.9423 39 1 0.8526 -1.7951 1.6217 40 1 2.5814 -2.0169 2.0040 41 1 1.6119 -6.9388 -0.6164 42 1 3.1274 -3.8100 -0.7790 43 1 1.4525 -4.3241 -1.1466 44 1 2.3525 -2.4778 -3.0968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047479724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:17 Heat of formation + Delta-G solvation = -30.180837 kcal Electronic energy + Delta-G solvation = -30081.230258 eV Core-core repulsion = 25721.781339 eV Total energy + Delta-G solvation = -4359.448919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.77722 -42.86526 -41.09065 -39.42774 -37.65250 -36.78221 -36.50543 -33.94705 -33.31534 -31.02905 -30.28436 -29.89868 -29.00102 -28.08519 -26.57948 -25.00845 -23.20242 -22.66535 -22.38561 -21.48797 -20.84320 -19.14588 -19.06982 -18.75786 -18.25689 -17.87482 -17.46409 -16.81600 -16.76041 -16.58334 -16.46985 -15.86802 -15.53747 -15.29634 -15.24228 -14.91293 -14.86450 -14.70111 -14.34852 -14.19174 -14.08632 -13.98664 -13.64582 -13.60120 -13.26855 -13.14646 -13.06075 -12.81191 -12.75693 -12.27162 -12.01729 -11.96234 -11.95087 -11.53386 -11.40529 -11.05318 -10.98520 -10.78804 -9.92473 -9.26066 -8.99703 -8.89128 -7.83110 -5.29901 -0.43082 0.36568 0.91483 1.46986 1.49158 1.52697 1.59187 1.89400 2.12912 2.46063 2.66962 3.01578 3.20548 3.29327 3.42337 3.58934 3.61655 3.73606 3.84199 3.94328 3.98064 4.08568 4.14228 4.24988 4.30009 4.32503 4.38393 4.44344 4.57214 4.64152 4.77836 4.82834 4.88323 4.97343 5.15982 5.20554 5.25583 5.34711 5.43890 5.44899 5.51186 5.65453 5.93966 6.12688 6.18323 6.31692 6.81165 6.82846 7.02446 7.67015 8.28833 9.18806 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002221 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.496377 B =12602.841089 C =13234.199796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.593 5.593 3 C 0.580 3.420 4 O -0.560 6.560 5 C 0.023 3.977 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.106 4.106 9 C 0.059 3.941 10 F -0.149 7.149 11 C -0.117 4.117 12 C -0.090 4.090 13 C 0.096 3.904 14 N -0.565 5.565 15 H 0.436 0.564 16 C 0.148 3.852 17 H 0.086 0.914 18 C 0.134 3.866 19 N -0.617 5.617 20 C -0.238 4.238 21 H 0.087 0.913 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.982 3.018 25 H -0.266 1.266 26 H -0.288 1.288 27 H -0.297 1.297 28 C 0.134 3.866 29 C 0.084 3.916 30 H 0.084 0.916 31 O -0.571 6.571 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.055 0.945 40 H 0.024 0.976 41 H 0.250 0.750 42 H -0.010 1.010 43 H 0.091 0.909 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 21.934 -0.324 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.324 5.324 3 C 0.370 3.630 4 O -0.439 6.439 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.118 4.118 8 C -0.126 4.126 9 C 0.039 3.961 10 F -0.128 7.128 11 C -0.137 4.137 12 C -0.110 4.110 13 C -0.015 4.015 14 N -0.178 5.178 15 H 0.285 0.715 16 C 0.043 3.957 17 H 0.105 0.895 18 C 0.008 3.992 19 N -0.344 5.344 20 C -0.366 4.366 21 H 0.104 0.896 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.810 3.190 25 H -0.190 1.190 26 H -0.214 1.214 27 H -0.224 1.224 28 C 0.008 3.992 29 C 0.023 3.977 30 H 0.102 0.898 31 O -0.378 6.378 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.186 0.814 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.007 0.993 43 H 0.109 0.891 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.155 22.038 0.016 24.265 hybrid contribution 0.099 -1.707 0.054 1.710 sum -10.056 20.332 0.070 22.683 Atomic orbital electron populations 1.22485 0.77824 1.05579 1.03690 1.47622 1.08054 1.04502 1.72250 1.17573 0.86403 0.82717 0.76316 1.90829 1.14838 1.86833 1.51372 1.19740 0.84510 0.93800 1.10700 1.21001 0.99918 0.89397 1.03937 1.17958 0.93522 0.92926 1.07425 1.20408 0.98319 0.92524 1.01327 1.17245 0.95400 0.76816 1.06679 1.91479 1.97292 1.29401 1.94641 1.21183 0.98068 0.93673 1.00741 1.20278 0.95854 0.93016 1.01884 1.18710 0.96183 0.83595 1.03039 1.42987 1.07997 1.06891 1.59930 0.71513 1.21783 0.97188 0.82228 0.94481 0.89537 1.21601 0.99282 0.84307 0.94052 1.44514 1.81061 1.02017 1.06849 1.19478 1.38669 0.85664 0.92837 0.89565 1.25630 1.02144 0.99994 0.97760 1.69968 1.56205 1.21017 1.12525 0.84956 0.76884 0.78863 0.78258 1.19024 1.21427 1.22390 1.22371 0.97276 0.94312 0.85227 1.23467 0.94641 0.94570 0.85012 0.89831 1.86428 1.67560 1.59373 1.24472 0.89330 0.88501 0.88808 0.82687 0.83766 0.81536 0.81369 0.92667 0.95816 0.94058 0.99250 0.89105 0.75614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 7.52 127.77 0.96 1.81 16 2 N -0.59 -16.99 2.89 -820.25 -2.37 -19.36 16 3 C 0.58 18.07 7.64 86.56 0.66 18.74 16 4 O -0.56 -22.18 16.24 -4.17 -0.07 -22.25 16 5 C 0.02 0.55 6.55 39.92 0.26 0.81 16 6 C -0.12 -2.74 10.54 22.55 0.24 -2.50 16 7 C -0.11 -2.31 6.16 -21.36 -0.13 -2.45 16 8 C -0.11 -1.92 10.03 22.35 0.22 -1.70 16 9 C 0.06 0.97 7.24 22.10 0.16 1.13 16 10 F -0.15 -2.73 17.25 44.97 0.78 -1.95 16 11 C -0.12 -1.39 9.99 22.35 0.22 -1.16 16 12 C -0.09 -1.01 10.07 22.37 0.23 -0.78 16 13 C 0.10 1.61 7.25 39.11 0.28 1.89 16 14 N -0.57 -9.56 5.13 -177.16 -0.91 -10.47 16 15 H 0.44 5.04 4.85 -92.71 -0.45 4.59 16 16 C 0.15 5.40 3.08 46.18 0.14 5.54 16 17 H 0.09 3.71 7.00 -2.39 -0.02 3.70 16 18 C 0.13 5.29 6.88 86.73 0.60 5.89 16 19 N -0.62 -30.03 3.39 -692.00 -2.35 -32.38 16 20 C -0.24 -12.56 10.27 84.03 0.86 -11.69 16 21 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 23 N -0.95 -53.45 10.09 21.65 0.22 -53.23 16 24 Si 0.98 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 28 C 0.13 6.31 5.62 86.85 0.49 6.80 16 29 C 0.08 3.07 3.94 31.98 0.13 3.20 16 30 H 0.08 2.71 6.17 -2.39 -0.01 2.69 16 31 O -0.57 -20.12 13.47 -148.98 -2.01 -22.13 16 32 H 0.09 1.20 7.34 -2.39 -0.02 1.19 16 33 H 0.10 1.33 5.70 -2.39 -0.01 1.32 16 34 H 0.09 1.84 6.15 -2.39 -0.01 1.82 16 35 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 39 H 0.06 1.93 7.07 -2.39 -0.02 1.91 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.09 4.70 5.87 -2.39 -0.01 4.68 16 44 H 0.39 10.57 9.11 -74.05 -0.67 9.90 16 Total: -1.00 -72.65 361.53 1.07 -71.57 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.04 Total: 22.17 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 5.79 Total: 22.64 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -5.41 Total: -115.44 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.08 Total: -44.38 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.65 1.07 -71.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047479724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.391 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds