Wall clock time and date at job start Wed Apr 1 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00052 * 3 2 1 5 5 H 1.48495 * 109.47036 * 30.00169 * 3 2 1 6 6 H 1.48496 * 109.46819 * 150.00448 * 3 2 1 7 7 C 1.38806 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46778 * 125.33876 * 179.97438 * 9 7 2 11 11 C 1.53966 * 106.62643 * 161.50896 * 10 9 7 12 12 H 1.09001 * 113.01659 * 265.71542 * 11 10 9 13 13 C 1.54126 * 109.47454 * 138.17883 * 11 10 9 14 14 N 1.46744 * 106.61726 * 278.67757 * 13 11 10 15 15 C 1.34774 * 125.32859 * 161.53065 * 14 13 11 16 16 O 1.21279 * 120.00472 * 179.69672 * 15 14 13 17 17 C 1.50706 * 120.00020 * 359.69982 * 15 14 13 18 18 C 1.50698 * 109.47294 * 180.02562 * 17 15 14 19 19 C 1.33638 * 122.75149 * 84.70445 * 18 17 15 20 20 S 1.76199 * 107.92053 * 179.97438 * 19 18 17 21 21 C 1.70973 * 90.28486 * 0.27254 * 20 19 18 22 22 C 1.50702 * 124.91493 * 179.83597 * 21 20 19 23 23 C 1.53001 * 117.49764 * 8.75598 * 22 21 20 24 24 C 1.52998 * 117.50312 * 300.09497 * 22 21 20 25 25 N 1.29021 * 110.16980 * 359.84253 * 21 20 19 26 26 C 1.46635 * 109.34459 * 341.26737 * 14 13 11 27 27 C 1.53698 * 108.00833 * 1.10299 * 26 14 13 28 28 H 1.08997 * 112.55538 * 254.08573 * 27 26 14 29 29 C 1.46669 * 125.33876 * 0.02915 * 9 7 2 30 30 H 0.97008 * 120.00325 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.02596 * 42.21955 * 10 9 7 32 32 H 1.08998 * 110.02863 * 280.80234 * 10 9 7 33 33 H 1.09002 * 110.16212 * 159.33835 * 13 11 10 34 34 H 1.09000 * 109.95310 * 37.90508 * 13 11 10 35 35 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 36 36 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 37 37 H 1.08001 * 126.03618 * 0.03609 * 19 18 17 38 38 H 1.09004 * 115.54830 * 154.41835 * 22 21 20 39 39 H 1.09001 * 117.49899 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.49733 * 145.02096 * 23 22 21 41 41 H 1.09003 * 117.49972 * 214.98299 * 24 22 21 42 42 H 1.09004 * 117.49734 * 359.97396 * 24 22 21 43 43 H 1.09008 * 109.76351 * 120.74144 * 26 14 13 44 44 H 1.08997 * 109.76883 * 241.46225 * 26 14 13 45 45 H 1.08998 * 109.77338 * 60.90337 * 29 9 7 46 46 H 1.08998 * 109.77508 * 300.14377 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9380 -3.7219 -0.0016 11 6 0.8507 -4.7063 0.4667 12 1 0.8873 -4.9035 1.5381 13 6 0.9078 -5.9829 -0.3949 14 7 0.1866 -5.6833 -1.6373 15 6 0.2932 -6.3779 -2.7873 16 8 -0.3545 -6.0473 -3.7578 17 6 1.2174 -7.5657 -2.8672 18 6 1.1527 -8.1603 -4.2504 19 6 1.8865 -7.7025 -5.2692 20 16 1.5071 -8.6733 -6.6899 21 6 0.3936 -9.5930 -5.7746 22 6 -0.4328 -10.7322 -6.3134 23 6 -0.1179 -11.2267 -7.7266 24 6 -1.3951 -10.4253 -7.4626 25 7 0.3632 -9.1704 -4.5559 26 6 -0.6731 -4.5136 -1.4299 27 6 -0.4702 -4.0247 0.0131 28 1 -1.3135 -4.2679 0.6594 29 6 -0.1347 -2.5245 -0.0006 30 1 -0.4851 0.8401 0.0004 31 1 2.7836 -3.7449 0.6859 32 1 2.2674 -3.9806 -1.0079 33 1 0.4254 -6.8098 0.1262 34 1 1.9445 -6.2356 -0.6172 35 1 2.2382 -7.2466 -2.6568 36 1 0.9123 -8.3134 -2.1352 37 1 2.5888 -6.8830 -5.2286 38 1 -0.7464 -11.4740 -5.5788 39 1 0.6867 -10.7278 -8.2668 40 1 -0.2249 -12.2937 -7.9219 41 1 -2.3417 -10.9653 -7.4842 42 1 -1.4308 -9.3992 -7.8287 43 1 -0.3963 -3.7242 -2.1288 44 1 -1.7161 -4.7911 -1.5817 45 1 -0.5483 -2.0622 -0.8969 46 1 -0.5499 -2.0459 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049099637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:47 Heat of formation + Delta-G solvation = 71.011212 kcal Electronic energy + Delta-G solvation = -27674.712700 eV Core-core repulsion = 23885.864974 eV Total energy + Delta-G solvation = -3788.847726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54824 -39.80363 -38.15093 -37.39818 -34.96801 -32.47968 -31.96500 -30.27218 -29.66951 -28.32468 -25.97553 -25.50872 -25.22003 -23.00559 -22.86551 -21.59527 -20.20028 -20.11985 -19.38977 -19.08175 -17.79204 -17.23820 -16.59794 -16.46059 -15.94301 -15.44237 -14.93750 -14.74870 -14.58602 -14.29073 -14.06313 -13.69414 -13.38764 -13.24885 -13.08884 -12.74371 -12.58956 -12.17385 -12.07979 -12.02546 -11.79360 -11.69973 -11.49597 -11.39287 -11.17126 -10.96668 -10.91559 -10.82333 -10.35798 -10.13385 -10.01564 -9.92649 -9.80379 -9.71118 -9.68114 -9.46501 -8.78388 -8.62599 -8.35572 -6.85240 -5.73979 -3.07619 0.54701 1.18435 1.56624 2.49520 2.79599 3.23070 3.39067 3.43887 3.45526 3.45892 3.69558 4.35333 4.46963 4.50033 4.52874 4.63840 4.76422 4.85196 4.95811 5.10060 5.15041 5.18550 5.25122 5.28114 5.40452 5.46432 5.51835 5.55123 5.61308 5.61603 5.66620 5.70796 5.77095 5.93202 5.97492 6.13543 6.27564 6.33415 6.54143 6.60376 6.68811 6.81671 7.53049 7.54557 7.61831 7.73312 7.79144 8.24505 8.33850 9.20277 9.80772 10.44503 11.37623 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.002161 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.198512 B =12955.126047 C =13377.680300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.099 0.901 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.531 3.469 16 O -0.537 6.537 17 C -0.063 4.063 18 C 0.092 3.908 19 C -0.241 4.241 20 S 0.119 5.881 21 C 0.078 3.922 22 C -0.084 4.084 23 C -0.170 4.170 24 C -0.160 4.160 25 N -0.461 5.461 26 C 0.120 3.880 27 C -0.123 4.123 28 H 0.088 0.912 29 C 0.187 3.813 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.178 0.822 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -23.541 -9.666 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.117 0.883 13 C -0.015 4.015 14 N -0.342 5.342 15 C 0.318 3.682 16 O -0.414 6.414 17 C -0.106 4.106 18 C -0.040 4.040 19 C -0.380 4.380 20 S 0.374 5.626 21 C -0.200 4.200 22 C -0.106 4.106 23 C -0.208 4.208 24 C -0.199 4.199 25 N -0.175 5.175 26 C -0.002 4.002 27 C -0.142 4.142 28 H 0.107 0.893 29 C 0.062 3.938 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.195 0.805 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.079 -23.416 -10.918 25.859 hybrid contribution 0.494 1.417 0.996 1.801 sum 1.573 -21.999 -9.923 24.184 Atomic orbital electron populations 1.69950 1.04866 1.25128 1.56981 1.24807 0.95748 0.97734 1.02125 0.86106 0.78555 0.83438 0.77581 1.21607 1.21651 1.20695 1.19030 0.90432 0.82329 1.43956 0.90430 1.44221 1.01472 0.99967 1.87210 1.21241 0.93855 0.85885 0.97175 1.22967 0.97180 0.93640 0.99149 0.88250 1.22019 0.96553 0.97899 0.85016 1.48232 1.44339 1.30627 1.11025 1.19902 0.83147 0.83493 0.81658 1.90714 1.46256 1.68970 1.35453 1.20171 1.01173 0.96246 0.92990 1.19427 0.94284 0.93725 0.96539 1.26784 1.09265 1.07071 0.94905 1.83724 1.37183 1.26616 1.15041 1.25974 1.00834 1.01053 0.92101 1.20391 1.01528 0.96537 0.92157 1.23156 0.99878 1.01360 0.96368 1.23166 0.94680 1.02074 0.99933 1.65879 1.21196 1.13061 1.17322 1.21966 0.93535 0.87133 0.97568 1.23144 0.97035 1.00072 0.93998 0.89335 1.21037 0.84581 0.86605 1.01577 0.93672 0.94672 0.96579 0.91679 0.90884 0.87133 0.87153 0.80493 0.84960 0.88334 0.87258 0.87415 0.88124 0.90696 0.92289 0.93293 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.25 55.49 0.57 -26.29 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.32 10.25 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.01 3.38 -171.84 -0.58 -15.59 16 10 C 0.14 2.84 6.49 -3.39 -0.02 2.82 16 11 C -0.11 -1.71 4.16 -88.25 -0.37 -2.08 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 13 C 0.11 1.39 5.77 -3.32 -0.02 1.37 16 14 N -0.61 -9.65 3.30 -172.25 -0.57 -10.21 16 15 C 0.53 8.69 7.83 -10.98 -0.09 8.61 16 16 O -0.54 -11.01 16.34 5.56 0.09 -10.92 16 17 C -0.06 -0.78 5.14 -29.03 -0.15 -0.93 16 18 C 0.09 1.26 5.23 -84.22 -0.44 0.82 16 19 C -0.24 -2.97 11.14 29.12 0.32 -2.65 16 20 S 0.12 1.24 21.94 -107.50 -2.36 -1.12 16 21 C 0.08 0.92 7.04 -13.46 -0.09 0.83 16 22 C -0.08 -0.74 6.33 -91.77 -0.58 -1.32 16 23 C -0.17 -1.04 10.02 -26.69 -0.27 -1.30 16 24 C -0.16 -1.14 10.24 -26.69 -0.27 -1.42 16 25 N -0.46 -6.53 10.53 -8.06 -0.08 -6.61 16 26 C 0.12 2.16 6.21 -3.61 -0.02 2.14 16 27 C -0.12 -2.18 4.01 -88.60 -0.36 -2.53 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 29 C 0.19 4.40 4.77 -3.57 -0.02 4.38 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.79 7.43 -51.93 -0.39 0.41 16 35 H 0.11 1.07 7.88 -51.93 -0.41 0.66 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.10 0.59 7.23 -51.93 -0.38 0.22 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.59 7.29 -51.92 -0.38 1.21 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.30 6.73 -51.93 -0.35 0.95 16 46 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -34.52 384.02 -11.67 -46.19 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.88 Total: -0.21 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.62 Total: 1.94 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.67 Total: -58.71 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.52 -11.67 -46.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.198 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds