Wall clock time and date at job start Wed Apr 1 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00052 * 3 2 1 5 5 H 1.48495 * 109.47036 * 30.00169 * 3 2 1 6 6 H 1.48496 * 109.46819 * 150.00448 * 3 2 1 7 7 C 1.38806 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46778 * 125.33876 * 179.97438 * 9 7 2 11 11 C 1.53966 * 106.62643 * 161.50896 * 10 9 7 12 12 H 1.09001 * 113.01659 * 265.71542 * 11 10 9 13 13 C 1.54126 * 109.47454 * 138.17883 * 11 10 9 14 14 N 1.46744 * 106.61726 * 278.67757 * 13 11 10 15 15 C 1.34774 * 125.32859 * 161.53065 * 14 13 11 16 16 O 1.21279 * 120.00472 * 179.69672 * 15 14 13 17 17 C 1.50706 * 120.00020 * 359.69982 * 15 14 13 18 18 C 1.50698 * 109.47294 * 180.02562 * 17 15 14 19 19 C 1.33638 * 122.75149 * 84.70445 * 18 17 15 20 20 S 1.76199 * 107.92053 * 179.97438 * 19 18 17 21 21 C 1.70973 * 90.28486 * 0.27254 * 20 19 18 22 22 C 1.50702 * 124.91493 * 179.83597 * 21 20 19 23 23 C 1.53001 * 117.49764 * 8.75598 * 22 21 20 24 24 C 1.52998 * 117.50312 * 300.09497 * 22 21 20 25 25 N 1.29021 * 110.16980 * 359.84253 * 21 20 19 26 26 C 1.46635 * 109.34459 * 341.26737 * 14 13 11 27 27 C 1.53698 * 108.00833 * 1.10299 * 26 14 13 28 28 H 1.08997 * 112.55538 * 254.08573 * 27 26 14 29 29 C 1.46669 * 125.33876 * 0.02915 * 9 7 2 30 30 H 0.97008 * 120.00325 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.02596 * 42.21955 * 10 9 7 32 32 H 1.08998 * 110.02863 * 280.80234 * 10 9 7 33 33 H 1.09002 * 110.16212 * 159.33835 * 13 11 10 34 34 H 1.09000 * 109.95310 * 37.90508 * 13 11 10 35 35 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 36 36 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 37 37 H 1.08001 * 126.03618 * 0.03609 * 19 18 17 38 38 H 1.09004 * 115.54830 * 154.41835 * 22 21 20 39 39 H 1.09001 * 117.49899 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.49733 * 145.02096 * 23 22 21 41 41 H 1.09003 * 117.49972 * 214.98299 * 24 22 21 42 42 H 1.09004 * 117.49734 * 359.97396 * 24 22 21 43 43 H 1.09008 * 109.76351 * 120.74144 * 26 14 13 44 44 H 1.08997 * 109.76883 * 241.46225 * 26 14 13 45 45 H 1.08998 * 109.77338 * 60.90337 * 29 9 7 46 46 H 1.08998 * 109.77508 * 300.14377 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9380 -3.7219 -0.0016 11 6 0.8507 -4.7063 0.4667 12 1 0.8873 -4.9035 1.5381 13 6 0.9078 -5.9829 -0.3949 14 7 0.1866 -5.6833 -1.6373 15 6 0.2932 -6.3779 -2.7873 16 8 -0.3545 -6.0473 -3.7578 17 6 1.2174 -7.5657 -2.8672 18 6 1.1527 -8.1603 -4.2504 19 6 1.8865 -7.7025 -5.2692 20 16 1.5071 -8.6733 -6.6899 21 6 0.3936 -9.5930 -5.7746 22 6 -0.4328 -10.7322 -6.3134 23 6 -0.1179 -11.2267 -7.7266 24 6 -1.3951 -10.4253 -7.4626 25 7 0.3632 -9.1704 -4.5559 26 6 -0.6731 -4.5136 -1.4299 27 6 -0.4702 -4.0247 0.0131 28 1 -1.3135 -4.2679 0.6594 29 6 -0.1347 -2.5245 -0.0006 30 1 -0.4851 0.8401 0.0004 31 1 2.7836 -3.7449 0.6859 32 1 2.2674 -3.9806 -1.0079 33 1 0.4254 -6.8098 0.1262 34 1 1.9445 -6.2356 -0.6172 35 1 2.2382 -7.2466 -2.6568 36 1 0.9123 -8.3134 -2.1352 37 1 2.5888 -6.8830 -5.2286 38 1 -0.7464 -11.4740 -5.5788 39 1 0.6867 -10.7278 -8.2668 40 1 -0.2249 -12.2937 -7.9219 41 1 -2.3417 -10.9653 -7.4842 42 1 -1.4308 -9.3992 -7.8287 43 1 -0.3963 -3.7242 -2.1288 44 1 -1.7161 -4.7911 -1.5817 45 1 -0.5483 -2.0622 -0.8969 46 1 -0.5499 -2.0459 0.8863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049099637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:46 Heat of formation + Delta-G solvation = 49.123026 kcal Electronic energy + Delta-G solvation = -27675.661843 eV Core-core repulsion = 23885.864974 eV Total energy + Delta-G solvation = -3789.796869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72362 -40.89932 -39.47251 -38.08284 -36.62036 -34.13780 -33.15996 -31.75520 -31.25959 -29.39941 -27.29860 -27.03877 -26.49541 -24.48777 -23.37415 -22.41682 -21.93029 -21.07655 -20.83504 -20.21453 -18.92217 -18.65099 -18.10627 -17.38395 -17.06828 -16.76808 -16.54036 -15.97950 -15.63457 -15.50962 -15.27793 -14.89940 -14.72574 -14.55496 -14.29138 -14.01706 -13.60552 -13.54910 -13.37755 -13.28961 -13.15895 -13.01743 -12.73570 -12.71211 -12.58519 -12.26054 -12.02037 -11.87615 -11.83339 -11.66744 -11.57853 -11.51144 -11.43999 -11.03966 -10.71841 -10.68488 -10.33823 -9.65923 -9.63314 -8.89082 -7.86599 -5.21734 -0.32418 0.35198 0.69481 1.43940 1.45911 1.52059 1.54493 1.57142 2.13419 2.48127 2.76863 3.01711 3.31090 3.40188 3.50259 3.66892 3.73754 3.79460 3.93277 3.94121 3.99008 4.09072 4.20444 4.23155 4.31305 4.37469 4.42122 4.55506 4.61729 4.69860 4.70431 4.78645 4.83614 4.89963 4.94943 5.02104 5.03109 5.09999 5.15256 5.15726 5.25645 5.38761 5.47332 5.60058 5.76804 6.20165 6.51172 6.73552 7.09009 7.10427 7.79244 8.40671 9.23541 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.002161 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.198512 B =12955.126047 C =13377.680300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.137 3.863 11 C -0.094 4.094 12 H 0.130 0.870 13 C 0.111 3.889 14 N -0.609 5.609 15 C 0.526 3.474 16 O -0.589 6.589 17 C -0.053 4.053 18 C 0.071 3.929 19 C -0.263 4.263 20 S 0.155 5.845 21 C 0.068 3.932 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.161 4.161 25 N -0.494 5.494 26 C 0.128 3.872 27 C -0.110 4.110 28 H 0.117 0.883 29 C 0.197 3.803 30 H 0.246 0.754 31 H 0.048 0.952 32 H 0.011 0.989 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.187 0.813 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.002 0.998 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -26.548 -9.259 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.013 3.987 11 C -0.114 4.114 12 H 0.148 0.852 13 C -0.011 4.011 14 N -0.342 5.342 15 C 0.316 3.684 16 O -0.470 6.470 17 C -0.095 4.095 18 C -0.061 4.061 19 C -0.402 4.402 20 S 0.411 5.589 21 C -0.209 4.209 22 C -0.130 4.130 23 C -0.186 4.186 24 C -0.200 4.200 25 N -0.208 5.208 26 C 0.005 3.995 27 C -0.130 4.130 28 H 0.135 0.865 29 C 0.072 3.928 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.204 0.796 38 H 0.155 0.845 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.020 0.980 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.624 -26.471 -10.490 28.594 hybrid contribution 0.036 2.350 0.771 2.474 sum 2.660 -24.121 -9.718 26.141 Atomic orbital electron populations 1.70189 1.06293 1.25206 1.58414 1.25666 0.96631 1.01131 1.02754 0.85087 0.77847 0.79211 0.77260 1.21806 1.22062 1.18950 1.19447 0.91034 0.83737 1.42715 0.89857 1.44555 1.02269 1.01408 1.86908 1.21486 0.95535 0.84440 0.97285 1.23002 0.93349 0.93657 1.01354 0.85211 1.22273 0.98488 0.97175 0.83141 1.48328 1.44047 1.29560 1.12266 1.20694 0.82890 0.84084 0.80756 1.90687 1.48446 1.70557 1.37271 1.20220 1.01494 0.94574 0.93183 1.19702 0.94737 0.94153 0.97466 1.27078 1.09654 1.07710 0.95721 1.83496 1.36136 1.25537 1.13762 1.26563 1.00902 1.01475 0.91969 1.20577 1.02676 0.96316 0.93401 1.23281 0.98917 1.02636 0.93747 1.23252 0.95934 1.01988 0.98859 1.65924 1.22225 1.14049 1.18652 1.21637 0.94179 0.87109 0.96604 1.22972 0.99565 0.95947 0.94515 0.86537 1.20714 0.84048 0.90285 0.97756 0.94482 0.93413 0.97088 0.87605 0.87954 0.84150 0.84953 0.79554 0.84486 0.88247 0.84774 0.85701 0.89373 0.95291 0.92063 0.97962 0.96647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.14 10.25 21.65 0.22 -57.92 16 2 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.48 10.25 84.03 0.86 -12.61 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -31.70 3.38 -697.58 -2.36 -34.06 16 10 C 0.14 5.20 6.49 86.65 0.56 5.76 16 11 C -0.09 -2.65 4.16 -9.26 -0.04 -2.69 16 12 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 13 C 0.11 2.35 5.77 86.71 0.50 2.85 16 14 N -0.61 -18.27 3.30 -817.28 -2.70 -20.97 16 15 C 0.53 16.70 7.83 87.66 0.69 17.39 16 16 O -0.59 -24.67 16.34 -3.02 -0.05 -24.72 16 17 C -0.05 -1.17 5.14 29.10 0.15 -1.02 16 18 C 0.07 1.87 5.23 41.52 0.22 2.09 16 19 C -0.26 -6.28 11.14 66.78 0.74 -5.54 16 20 S 0.15 3.09 21.94 -56.49 -1.24 1.85 16 21 C 0.07 1.56 7.04 88.52 0.62 2.18 16 22 C -0.11 -1.74 6.33 -11.54 -0.07 -1.81 16 23 C -0.15 -1.47 10.02 30.62 0.31 -1.16 16 24 C -0.16 -2.08 10.24 30.62 0.31 -1.77 16 25 N -0.49 -13.64 10.53 -179.40 -1.89 -15.53 16 26 C 0.13 4.66 6.21 86.59 0.54 5.20 16 27 C -0.11 -3.84 4.01 -9.49 -0.04 -3.88 16 28 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 29 C 0.20 9.68 4.77 86.59 0.41 10.09 16 30 H 0.25 14.67 8.31 -92.70 -0.77 13.89 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.01 0.44 7.72 -2.39 -0.02 0.42 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.66 7.43 -2.39 -0.02 1.64 16 35 H 0.14 2.21 7.88 -2.39 -0.02 2.19 16 36 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.14 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.10 0.98 7.23 -2.39 -0.02 0.96 16 40 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.03 1.31 7.29 -2.38 -0.02 1.29 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.00 0.13 6.73 -2.39 -0.02 0.11 16 46 H 0.02 0.84 7.37 -2.39 -0.02 0.82 16 Total: -1.00 -81.19 384.02 1.23 -79.96 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.99 Total: 11.44 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.23 Total: 11.56 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.72 Total: -128.47 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.24 Total: 1.85 kcal Total: -81.19 1.23 -79.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049099637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.084 kcal (2) G-P(sol) polarization free energy of solvation -81.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds