Wall clock time and date at job start Wed Apr 1 2020 04:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00304 * 2 1 4 4 H 1.48506 * 109.46789 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47284 * 119.99921 * 3 2 1 6 6 H 1.48499 * 109.46979 * 240.00222 * 3 2 1 7 7 C 1.38815 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.47121 * 125.76642 * 359.69370 * 9 7 2 11 11 C 1.54594 * 107.23749 * 177.31149 * 10 9 7 12 12 C 1.54415 * 102.53088 * 338.65733 * 11 10 9 13 13 H 1.09000 * 110.71634 * 279.24887 * 12 11 10 14 14 C 1.48210 * 125.76617 * 179.97438 * 9 7 2 15 15 H 1.09008 * 111.52754 * 326.99044 * 14 9 7 16 16 C 1.53008 * 107.11685 * 89.10380 * 14 9 7 17 17 C 1.52738 * 110.79780 * 168.07949 * 16 14 9 18 18 C 1.53460 * 108.44473 * 296.22942 * 17 16 14 19 19 N 1.45117 * 111.61733 * 156.38551 * 12 11 10 20 20 C 1.34769 * 119.57426 * 111.33104 * 19 12 11 21 21 O 1.21624 * 120.00295 * 355.71833 * 20 19 12 22 22 C 1.47264 * 120.00027 * 175.71159 * 20 19 12 23 23 N 1.29766 * 125.52681 * 230.79045 * 22 20 19 24 24 C 1.32591 * 116.75107 * 179.97438 * 23 22 20 25 25 C 1.34627 * 114.31223 * 359.95536 * 24 23 22 26 26 S 1.71623 * 109.59792 * 359.82378 * 25 24 23 27 27 C 1.51941 * 110.68484 * 180.02562 * 25 24 23 28 28 C 1.54234 * 104.85221 * 17.37132 * 27 25 24 29 29 C 1.52801 * 136.15731 * 179.89152 * 24 23 22 30 30 H 0.96999 * 119.99633 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.88493 * 296.84899 * 10 9 7 32 32 H 1.08997 * 109.88714 * 58.02919 * 10 9 7 33 33 H 1.09000 * 110.94616 * 220.31236 * 11 10 9 34 34 H 1.09001 * 110.77122 * 96.92339 * 11 10 9 35 35 H 1.08997 * 109.21500 * 288.42370 * 16 14 9 36 36 H 1.08999 * 109.21018 * 47.74388 * 16 14 9 37 37 H 1.08998 * 109.63793 * 55.91503 * 17 16 14 38 38 H 1.09000 * 109.64333 * 176.32888 * 17 16 14 39 39 H 1.08990 * 109.83324 * 177.59643 * 18 17 16 40 40 H 1.09000 * 109.83059 * 298.55083 * 18 17 16 41 41 H 1.09009 * 110.36329 * 136.21000 * 27 25 24 42 42 H 1.08999 * 110.36393 * 258.52644 * 27 25 24 43 43 H 1.09005 * 110.95105 * 91.61794 * 28 27 25 44 44 H 1.09000 * 110.94866 * 215.30322 * 28 27 25 45 45 H 1.08997 * 110.31179 * 281.36897 * 29 24 23 46 46 H 1.09002 * 110.31150 * 43.55091 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1382 -2.5358 0.0086 11 6 -0.4462 -4.0491 -0.0621 12 6 0.8575 -4.6291 -0.6523 13 1 0.8792 -4.5050 -1.7350 14 6 1.9339 -3.7395 0.0017 15 1 2.8730 -3.7555 -0.5514 16 6 2.1407 -4.1402 1.4639 17 6 2.4869 -5.6236 1.5760 18 6 1.2897 -6.4410 1.0724 19 7 1.0222 -6.0298 -0.3106 20 6 0.9286 -6.9655 -1.2761 21 8 0.6305 -6.6417 -2.4099 22 6 1.1873 -8.3799 -0.9583 23 7 1.9903 -9.1644 -1.6093 24 6 2.0925 -10.4114 -1.1703 25 6 1.3334 -10.6834 -0.0922 26 16 0.4641 -9.2774 0.3693 27 6 1.5136 -12.1288 0.3402 28 6 2.8168 -12.5871 -0.3458 29 6 2.8682 -11.6631 -1.5779 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5490 -2.1143 0.9261 32 1 -0.5660 -2.0313 -0.8577 33 1 -1.2909 -4.2444 -0.7228 34 1 -0.6338 -4.4524 0.9331 35 1 2.9533 -3.5492 1.8862 36 1 1.2261 -3.9421 2.0228 37 1 3.3629 -5.8424 0.9654 38 1 2.6938 -5.8739 2.6165 39 1 1.5288 -7.5039 1.1026 40 1 0.4169 -6.2395 1.6934 41 1 1.6134 -12.1909 1.4239 42 1 0.6731 -12.7339 0.0005 43 1 3.6776 -12.4203 0.3017 44 1 2.7528 -13.6335 -0.6443 45 1 2.3890 -12.1443 -2.4304 46 1 3.9003 -11.4074 -1.8174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049596760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:03 Heat of formation + Delta-G solvation = 54.171088 kcal Electronic energy + Delta-G solvation = -28682.813285 eV Core-core repulsion = 24893.235316 eV Total energy + Delta-G solvation = -3789.577969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84958 -40.16523 -38.05904 -36.14066 -35.37506 -32.50305 -32.28835 -29.52551 -29.01405 -28.71437 -28.16354 -25.86511 -24.35782 -24.16333 -22.19009 -22.03513 -20.84120 -20.04517 -18.98273 -18.69374 -18.07072 -17.24075 -16.91533 -16.44774 -15.79238 -15.09930 -14.77957 -14.48977 -14.35956 -14.15323 -14.08989 -13.77946 -13.64261 -13.37786 -13.21423 -12.94220 -12.58089 -12.44272 -12.15623 -11.97540 -11.68503 -11.56627 -11.47015 -11.40259 -11.07147 -11.02457 -10.81088 -10.67579 -10.59544 -10.45965 -10.12009 -10.03734 -9.69404 -9.67017 -9.63510 -9.51775 -8.74941 -8.62731 -8.41508 -6.87961 -5.71812 -3.06188 0.16694 0.75391 1.40670 2.21482 2.52298 3.08283 3.41079 3.45609 3.46530 3.66907 4.04398 4.23940 4.47830 4.50917 4.57318 4.83164 4.97058 5.06511 5.11331 5.19761 5.21946 5.29846 5.31826 5.41261 5.43817 5.51187 5.52255 5.58257 5.63683 5.67808 5.79208 5.81887 5.93773 6.05693 6.14159 6.27474 6.31281 6.47146 6.51984 6.66525 6.87319 7.01002 7.27393 7.43322 7.53652 7.59840 7.81203 8.04911 8.22805 9.19546 9.79004 10.44422 11.39342 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.002548 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.819155 B =10987.096944 C =11053.830154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.181 3.819 11 C -0.152 4.152 12 C 0.132 3.868 13 H 0.106 0.894 14 C 0.156 3.844 15 H 0.062 0.938 16 C -0.130 4.130 17 C -0.131 4.131 18 C 0.093 3.907 19 N -0.576 5.576 20 C 0.593 3.407 21 O -0.504 6.504 22 C 0.025 3.975 23 N -0.405 5.405 24 C 0.036 3.964 25 C -0.269 4.269 26 S 0.198 5.802 27 C -0.037 4.037 28 C -0.116 4.116 29 C -0.041 4.041 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -26.100 5.116 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.029 3.971 13 H 0.123 0.877 14 C 0.047 3.953 15 H 0.080 0.920 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.030 4.030 19 N -0.309 5.309 20 C 0.374 3.626 21 O -0.378 6.378 22 C -0.255 4.255 23 N -0.119 5.119 24 C -0.099 4.099 25 C -0.391 4.391 26 S 0.456 5.544 27 C -0.076 4.076 28 C -0.155 4.155 29 C -0.080 4.080 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.595 -25.096 4.826 25.605 hybrid contribution 0.915 0.296 -0.313 1.012 sum 2.510 -24.799 4.513 25.331 Atomic orbital electron populations 1.69937 1.04863 1.25222 1.56803 1.24795 0.95709 0.97619 1.02135 0.86198 0.78451 0.83195 0.77889 1.21630 1.21208 1.21146 1.18984 0.90405 0.82137 1.44051 0.90444 1.44700 1.01468 0.99206 1.86773 1.21195 0.84307 0.87536 1.01393 1.23148 0.96207 0.99870 0.99871 1.21919 0.97125 0.76612 1.01469 0.87653 1.21356 0.94500 0.86127 0.93268 0.91955 1.22142 1.02170 0.92889 0.99853 1.21906 0.97040 0.97106 1.00906 1.22198 0.99551 0.99069 0.82223 1.47463 1.69003 1.06740 1.07647 1.16795 0.78573 0.81963 0.85262 1.90856 1.46498 1.80046 1.20388 1.27179 1.01600 0.99702 0.97014 1.65757 1.16279 1.02608 1.27251 1.21778 1.01164 0.91795 0.95127 1.26850 1.04793 1.03386 1.04033 1.83846 1.42885 0.99363 1.28326 1.20712 0.98783 0.86975 1.01166 1.22334 0.97333 0.99561 0.96295 1.20899 0.99917 0.88608 0.98625 0.93649 0.93915 0.92834 0.91732 0.92103 0.91843 0.91643 0.91678 0.90974 0.90425 0.90256 0.90041 0.89448 0.90206 0.89365 0.89436 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.33 55.49 0.57 -26.12 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.19 10.29 -15.06 -0.15 -6.34 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.71 2.91 -162.18 -0.47 -15.18 16 10 C 0.18 4.29 5.19 -2.87 -0.01 4.28 16 11 C -0.15 -2.86 6.08 -25.15 -0.15 -3.01 16 12 C 0.13 2.49 3.08 -67.30 -0.21 2.28 16 13 H 0.11 2.23 7.00 -51.93 -0.36 1.87 16 14 C 0.16 3.14 3.59 -66.36 -0.24 2.90 16 15 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 16 C -0.13 -2.22 5.10 -26.86 -0.14 -2.36 16 17 C -0.13 -1.71 6.11 -26.63 -0.16 -1.87 16 18 C 0.09 1.18 5.62 -3.67 -0.02 1.16 16 19 N -0.58 -9.24 2.73 -166.40 -0.45 -9.69 16 20 C 0.59 10.28 7.62 -12.60 -0.10 10.19 16 21 O -0.50 -10.58 16.45 5.26 0.09 -10.49 16 22 C 0.02 0.37 6.29 -14.76 -0.09 0.27 16 23 N -0.40 -6.24 10.63 -6.78 -0.07 -6.31 16 24 C 0.04 0.43 7.62 -82.49 -0.63 -0.20 16 25 C -0.27 -2.66 7.17 -34.97 -0.25 -2.91 16 26 S 0.20 2.09 20.39 -107.50 -2.19 -0.10 16 27 C -0.04 -0.22 6.80 -26.62 -0.18 -0.40 16 28 C -0.12 -0.58 7.11 -25.52 -0.18 -0.76 16 29 C -0.04 -0.32 6.80 -26.26 -0.18 -0.49 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 1.11 7.61 -51.93 -0.40 0.71 16 32 H 0.05 1.43 7.28 -51.93 -0.38 1.05 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.04 6.82 -51.93 -0.35 0.68 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.86 4.25 -36.03 -0.15 0.71 16 40 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 41 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -32.90 367.59 -11.41 -44.31 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.60 Total: -1.38 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.79 Total: 2.46 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.43 Total: -57.30 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.19 Total: -0.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.90 -11.41 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049596760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.482 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds