Wall clock time and date at job start Wed Apr 1 2020 04:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00304 * 2 1 4 4 H 1.48506 * 109.46789 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47284 * 119.99921 * 3 2 1 6 6 H 1.48499 * 109.46979 * 240.00222 * 3 2 1 7 7 C 1.38815 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00266 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.47121 * 125.76642 * 359.69370 * 9 7 2 11 11 C 1.54594 * 107.23749 * 177.31149 * 10 9 7 12 12 C 1.54415 * 102.53088 * 338.65733 * 11 10 9 13 13 H 1.09000 * 110.71634 * 279.24887 * 12 11 10 14 14 C 1.48210 * 125.76617 * 179.97438 * 9 7 2 15 15 H 1.09008 * 111.52754 * 326.99044 * 14 9 7 16 16 C 1.53008 * 107.11685 * 89.10380 * 14 9 7 17 17 C 1.52738 * 110.79780 * 168.07949 * 16 14 9 18 18 C 1.53460 * 108.44473 * 296.22942 * 17 16 14 19 19 N 1.45117 * 111.61733 * 156.38551 * 12 11 10 20 20 C 1.34769 * 119.57426 * 111.33104 * 19 12 11 21 21 O 1.21624 * 120.00295 * 355.71833 * 20 19 12 22 22 C 1.47264 * 120.00027 * 175.71159 * 20 19 12 23 23 N 1.29766 * 125.52681 * 230.79045 * 22 20 19 24 24 C 1.32591 * 116.75107 * 179.97438 * 23 22 20 25 25 C 1.34627 * 114.31223 * 359.95536 * 24 23 22 26 26 S 1.71623 * 109.59792 * 359.82378 * 25 24 23 27 27 C 1.51941 * 110.68484 * 180.02562 * 25 24 23 28 28 C 1.54234 * 104.85221 * 17.37132 * 27 25 24 29 29 C 1.52801 * 136.15731 * 179.89152 * 24 23 22 30 30 H 0.96999 * 119.99633 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.88493 * 296.84899 * 10 9 7 32 32 H 1.08997 * 109.88714 * 58.02919 * 10 9 7 33 33 H 1.09000 * 110.94616 * 220.31236 * 11 10 9 34 34 H 1.09001 * 110.77122 * 96.92339 * 11 10 9 35 35 H 1.08997 * 109.21500 * 288.42370 * 16 14 9 36 36 H 1.08999 * 109.21018 * 47.74388 * 16 14 9 37 37 H 1.08998 * 109.63793 * 55.91503 * 17 16 14 38 38 H 1.09000 * 109.64333 * 176.32888 * 17 16 14 39 39 H 1.08990 * 109.83324 * 177.59643 * 18 17 16 40 40 H 1.09000 * 109.83059 * 298.55083 * 18 17 16 41 41 H 1.09009 * 110.36329 * 136.21000 * 27 25 24 42 42 H 1.08999 * 110.36393 * 258.52644 * 27 25 24 43 43 H 1.09005 * 110.95105 * 91.61794 * 28 27 25 44 44 H 1.09000 * 110.94866 * 215.30322 * 28 27 25 45 45 H 1.08997 * 110.31179 * 281.36897 * 29 24 23 46 46 H 1.09002 * 110.31150 * 43.55091 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1382 -2.5358 0.0086 11 6 -0.4462 -4.0491 -0.0621 12 6 0.8575 -4.6291 -0.6523 13 1 0.8792 -4.5050 -1.7350 14 6 1.9339 -3.7395 0.0017 15 1 2.8730 -3.7555 -0.5514 16 6 2.1407 -4.1402 1.4639 17 6 2.4869 -5.6236 1.5760 18 6 1.2897 -6.4410 1.0724 19 7 1.0222 -6.0298 -0.3106 20 6 0.9286 -6.9655 -1.2761 21 8 0.6305 -6.6417 -2.4099 22 6 1.1873 -8.3799 -0.9583 23 7 1.9903 -9.1644 -1.6093 24 6 2.0925 -10.4114 -1.1703 25 6 1.3334 -10.6834 -0.0922 26 16 0.4641 -9.2774 0.3693 27 6 1.5136 -12.1288 0.3402 28 6 2.8168 -12.5871 -0.3458 29 6 2.8682 -11.6631 -1.5779 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5490 -2.1143 0.9261 32 1 -0.5660 -2.0313 -0.8577 33 1 -1.2909 -4.2444 -0.7228 34 1 -0.6338 -4.4524 0.9331 35 1 2.9533 -3.5492 1.8862 36 1 1.2261 -3.9421 2.0228 37 1 3.3629 -5.8424 0.9654 38 1 2.6938 -5.8739 2.6165 39 1 1.5288 -7.5039 1.1026 40 1 0.4169 -6.2395 1.6934 41 1 1.6134 -12.1909 1.4239 42 1 0.6731 -12.7339 0.0005 43 1 3.6776 -12.4203 0.3017 44 1 2.7528 -13.6335 -0.6443 45 1 2.3890 -12.1443 -2.4304 46 1 3.9003 -11.4074 -1.8174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049596760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:02 Heat of formation + Delta-G solvation = 33.620790 kcal Electronic energy + Delta-G solvation = -28683.704413 eV Core-core repulsion = 24893.235316 eV Total energy + Delta-G solvation = -3790.469097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01777 -41.22454 -39.53767 -36.97358 -36.84582 -34.22374 -33.85948 -31.15927 -30.15712 -29.63116 -29.33187 -27.07710 -26.11033 -25.47226 -23.46215 -22.84614 -22.02583 -21.68702 -20.16177 -19.59584 -19.33529 -18.81584 -18.37778 -17.41650 -16.84431 -16.73807 -16.34081 -16.02017 -15.60171 -15.28081 -15.15384 -15.04583 -14.76229 -14.39598 -14.24278 -14.16324 -13.81181 -13.75682 -13.59594 -13.18781 -12.99477 -12.84883 -12.64342 -12.53374 -12.35834 -12.26213 -12.12577 -12.10996 -12.02091 -11.87072 -11.82148 -11.56791 -11.51038 -11.25599 -10.73364 -10.70731 -10.38952 -9.85937 -9.54232 -8.90859 -7.84105 -5.20036 -0.75800 -0.15379 0.54635 1.11844 1.40125 1.46292 1.49147 1.55109 1.89435 2.49078 2.77736 3.30002 3.35304 3.48265 3.49417 3.78089 3.83691 3.93452 3.96752 3.98266 4.06075 4.16179 4.29985 4.40520 4.44902 4.50600 4.54117 4.60743 4.67851 4.74694 4.77550 4.83566 4.89339 4.92891 4.99866 5.11105 5.11672 5.18384 5.27452 5.31955 5.35787 5.45136 5.55485 5.63318 5.73510 6.03919 6.17794 6.48855 6.74827 7.08976 7.74326 8.39549 9.25691 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.002548 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.819155 B =10987.096944 C =11053.830154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.617 5.617 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.146 3.854 13 H 0.072 0.928 14 C 0.152 3.848 15 H 0.049 0.951 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.089 3.911 19 N -0.572 5.572 20 C 0.592 3.408 21 O -0.557 6.557 22 C -0.027 4.027 23 N -0.440 5.440 24 C 0.002 3.998 25 C -0.253 4.253 26 S 0.266 5.734 27 C -0.038 4.038 28 C -0.105 4.105 29 C -0.044 4.044 30 H 0.247 0.753 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -30.005 7.860 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.342 5.342 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.041 3.959 13 H 0.090 0.910 14 C 0.044 3.956 15 H 0.067 0.933 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.033 4.033 19 N -0.303 5.303 20 C 0.376 3.624 21 O -0.435 6.435 22 C -0.303 4.303 23 N -0.156 5.156 24 C -0.132 4.132 25 C -0.376 4.376 26 S 0.523 5.477 27 C -0.078 4.078 28 C -0.144 4.144 29 C -0.084 4.084 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.384 -29.036 7.609 30.111 hybrid contribution 0.705 1.352 -1.172 1.923 sum 3.089 -27.685 6.437 28.591 Atomic orbital electron populations 1.70154 1.06200 1.25339 1.58202 1.25608 0.96584 1.00833 1.02673 0.85177 0.77142 0.78992 0.78152 1.22117 1.20012 1.20782 1.19342 0.90874 0.83403 1.42968 0.90125 1.44932 1.02041 1.00369 1.86823 1.20877 0.83898 0.90372 0.98194 1.22963 0.96360 0.96236 1.01632 1.21424 0.96520 0.78518 0.99437 0.90978 1.21535 0.93962 0.84446 0.95622 0.93298 1.21913 1.01648 0.95831 0.96444 1.21865 0.96954 0.93751 1.03306 1.22524 1.00347 1.00241 0.80148 1.47418 1.68584 1.05173 1.09152 1.17208 0.77304 0.83386 0.84509 1.90810 1.48814 1.81381 1.22509 1.26513 1.04583 0.98755 1.00443 1.65708 1.17091 1.04361 1.28478 1.22413 1.02867 0.91600 0.96349 1.27598 1.02342 1.05003 1.02611 1.83462 1.40934 0.98377 1.24897 1.21011 0.99947 0.84101 1.02703 1.22383 0.97049 1.00266 0.94683 1.21118 0.99289 0.87550 1.00427 0.94379 0.96441 0.96995 0.91113 0.89218 0.92742 0.92114 0.92032 0.87059 0.88323 0.88031 0.87765 0.87557 0.89482 0.86586 0.88884 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 10.33 21.65 0.22 -57.30 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.24 -13.32 10.29 84.03 0.86 -12.45 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -31.66 2.91 -667.03 -1.94 -33.61 16 10 C 0.19 9.59 5.19 86.80 0.45 10.04 16 11 C -0.13 -5.09 6.08 31.62 0.19 -4.90 16 12 C 0.15 5.68 3.08 46.14 0.14 5.82 16 13 H 0.07 3.29 7.00 -2.39 -0.02 3.27 16 14 C 0.15 6.27 3.59 45.07 0.16 6.43 16 15 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 16 C -0.12 -3.92 5.10 30.51 0.16 -3.76 16 17 C -0.12 -2.81 6.11 30.66 0.19 -2.62 16 18 C 0.09 2.01 5.62 86.49 0.49 2.50 16 19 N -0.57 -18.21 2.73 -798.63 -2.18 -20.39 16 20 C 0.59 21.03 7.62 86.62 0.66 21.69 16 21 O -0.56 -24.85 16.45 -4.11 -0.07 -24.92 16 22 C -0.03 -0.78 6.29 87.37 0.55 -0.23 16 23 N -0.44 -13.53 10.63 -175.37 -1.86 -15.40 16 24 C 0.00 0.05 7.62 42.30 0.32 0.38 16 25 C -0.25 -4.13 7.17 25.25 0.18 -3.95 16 26 S 0.27 4.81 20.39 -56.49 -1.15 3.65 16 27 C -0.04 -0.27 6.80 30.66 0.21 -0.06 16 28 C -0.10 -0.57 7.11 31.38 0.22 -0.35 16 29 C -0.04 -0.58 6.80 30.90 0.21 -0.37 16 30 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 32 H 0.01 0.68 7.28 -2.39 -0.02 0.66 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.09 2.92 6.82 -2.39 -0.02 2.91 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.08 7.12 -2.39 -0.02 2.06 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 1.86 4.25 -12.51 -0.05 1.81 16 40 H 0.10 1.91 7.53 -2.39 -0.02 1.90 16 41 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.59 367.59 1.46 -77.13 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.96 Total: 7.51 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.46 Total: 14.96 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.76 Total: -126.69 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.07 Total: -24.92 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.15 Total: 3.65 kcal Total: -78.59 1.46 -77.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049596760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.755 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds