Wall clock time and date at job start Wed Apr 1 2020 04:20:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86795 * 120.00110 * 2 1
4 4 H 1.48500 * 109.47145 * 270.00418 * 3 2 1
5 5 H 1.48502 * 109.46781 * 30.00346 * 3 2 1
6 6 H 1.48497 * 109.46942 * 150.00088 * 3 2 1
7 7 C 1.38808 * 119.99604 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99638 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00566 * 359.71790 * 7 2 1
10 10 C 1.46828 * 125.37937 * 180.02562 * 9 7 2
11 11 C 1.53893 * 107.49982 * 181.00586 * 10 9 7
12 12 H 1.09002 * 109.09160 * 259.49537 * 11 10 9
13 13 C 1.50766 * 110.60064 * 139.42742 * 11 10 9
14 14 C 1.49774 * 114.38368 * 289.67551 * 13 11 10
15 15 C 1.51613 * 111.72423 * 304.40646 * 14 13 11
16 16 N 1.44511 * 112.72019 * 42.27723 * 15 14 13
17 17 C 1.34781 * 116.65282 * 154.44668 * 16 15 14
18 18 O 1.21619 * 119.99692 * 175.66213 * 17 16 15
19 19 C 1.47251 * 120.00137 * 355.66272 * 17 16 15
20 20 N 1.29775 * 125.52185 * 7.72036 * 19 17 16
21 21 C 1.32596 * 116.74868 * 179.85080 * 20 19 17
22 22 C 1.34623 * 114.31274 * 0.41553 * 21 20 19
23 23 S 1.71630 * 109.59890 * 359.80773 * 22 21 20
24 24 C 1.51943 * 110.68946 * 179.82187 * 22 21 20
25 25 C 1.54236 * 104.84541 * 17.40073 * 24 22 21
26 26 C 1.52797 * 136.15122 * 180.02562 * 21 20 19
27 27 C 1.44111 * 126.69594 * 334.41675 * 16 15 14
28 28 H 1.09002 * 109.36054 * 254.44475 * 27 16 15
29 29 C 1.46910 * 125.37345 * 359.70113 * 9 7 2
30 30 H 0.96996 * 119.99795 * 359.97438 * 1 2 3
31 31 H 1.08997 * 109.84637 * 300.48759 * 10 9 7
32 32 H 1.08999 * 109.84248 * 61.51708 * 10 9 7
33 33 H 1.09003 * 108.67802 * 50.09116 * 13 11 10
34 34 H 1.09002 * 108.68645 * 168.02930 * 13 11 10
35 35 H 1.08999 * 109.20822 * 183.80243 * 14 13 11
36 36 H 1.08993 * 108.99664 * 64.88325 * 14 13 11
37 37 H 1.08991 * 108.83730 * 281.43951 * 15 14 13
38 38 H 1.09000 * 108.83200 * 163.10496 * 15 14 13
39 39 H 1.08998 * 110.36792 * 136.24311 * 24 22 21
40 40 H 1.08999 * 110.36686 * 258.45243 * 24 22 21
41 41 H 1.08997 * 110.95297 * 91.60986 * 25 24 22
42 42 H 1.08999 * 110.95796 * 215.29885 * 25 24 22
43 43 H 1.08995 * 110.31340 * 43.86893 * 26 21 20
44 44 H 1.09001 * 110.31407 * 281.68292 * 26 21 20
45 45 H 1.08996 * 110.08078 * 281.33939 * 29 9 7
46 46 H 1.09000 * 110.08800 * 42.91527 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0010
9 7 1.3256 -2.3880 0.0048
10 6 1.9373 -3.7228 0.0054
11 6 0.7960 -4.7550 -0.0136
12 1 0.6453 -5.1385 0.9955
13 6 1.1326 -5.9012 -0.9334
14 6 1.1246 -5.5488 -2.3890
15 6 -0.2013 -4.9486 -2.8139
16 7 -0.7196 -4.0029 -1.8519
17 6 -1.5519 -3.0541 -2.3249
18 8 -2.0856 -2.2760 -1.5576
19 6 -1.8150 -2.9597 -3.7707
20 7 -1.4210 -3.8125 -4.6660
21 6 -1.7590 -3.5575 -5.9226
22 6 -2.4675 -2.4247 -6.0870
23 16 -2.7073 -1.6695 -4.5646
24 6 -2.8059 -2.2111 -7.5528
25 6 -2.5919 -3.5888 -8.2125
26 6 -1.5444 -4.2273 -7.2790
27 6 -0.4387 -3.9703 -0.4389
28 1 -1.3059 -4.3366 0.1106
29 6 -0.1370 -2.5257 0.0175
30 1 -0.4850 0.8400 0.0004
31 1 2.5609 -3.8445 -0.8802
32 1 2.5394 -3.8534 0.9045
33 1 2.1293 -6.2664 -0.6856
34 1 0.4170 -6.7059 -0.7649
35 1 1.3108 -6.4478 -2.9766
36 1 1.9184 -4.8279 -2.5840
37 1 -0.9262 -5.7523 -2.9429
38 1 -0.0679 -4.4412 -3.7693
39 1 -3.8438 -1.8961 -7.6605
40 1 -2.1379 -1.4704 -7.9924
41 1 -3.5158 -4.1671 -8.2157
42 1 -2.1989 -3.4801 -9.2234
43 1 -1.7117 -5.3016 -7.2013
44 1 -0.5378 -4.0258 -7.6456
45 1 -0.5196 -2.3609 1.0248
46 1 -0.5861 -1.8139 -0.6752
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050095449.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:07
Heat of formation + Delta-G solvation = 77.094427 kcal
Electronic energy + Delta-G solvation = -29638.905555 eV
Core-core repulsion = 25850.321617 eV
Total energy + Delta-G solvation = -3788.583938 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-40.82940 -39.93931 -37.64853 -36.15721 -35.12183 -33.10177 -32.00054 -29.74388
-28.82747 -28.61345 -27.01610 -25.58912 -25.02286 -23.70300 -22.30186 -21.70542
-20.77885 -20.02449 -18.80820 -18.04516 -17.70310 -16.86991 -16.23226 -16.12595
-15.70014 -15.25032 -14.66550 -14.41861 -14.13388 -13.96157 -13.72185 -13.60257
-13.54268 -13.32962 -13.03677 -12.90212 -12.23551 -12.21708 -12.06836 -11.66345
-11.51951 -11.48417 -11.22344 -11.12828 -11.04378 -10.91001 -10.72647 -10.59287
-10.30805 -10.21810 -10.01935 -9.85808 -9.54456 -9.40756 -9.27391 -8.96352
-8.56015 -8.36779 -7.80316 -6.65581 -5.48501 -2.91103 0.43953 1.16571
1.87652 2.41439 3.38393 3.46550 3.51060 3.53688 3.56982 3.86008
4.27828 4.54377 4.59462 4.68950 4.87857 5.08631 5.11956 5.18775
5.27368 5.33827 5.40033 5.41758 5.48996 5.58036 5.59369 5.63279
5.71961 5.80737 5.85598 5.90836 5.93438 6.07267 6.12499 6.16937
6.27085 6.37945 6.53051 6.59066 6.71513 6.78686 6.88312 7.20228
7.50504 7.64668 7.76526 7.82382 8.18510 8.55093 8.72337 9.36284
9.97952 10.61779 11.53620
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.010844 B = 0.004404 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.457774 B = 6355.954722 C = 7904.586245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C -0.007 4.007
3 Si 0.907 3.093
4 H -0.291 1.291
5 H -0.290 1.290
6 H -0.283 1.283
7 C -0.230 4.230
8 H 0.075 0.925
9 N -0.602 5.602
10 C 0.141 3.859
11 C -0.097 4.097
12 H 0.079 0.921
13 C -0.103 4.103
14 C -0.127 4.127
15 C 0.095 3.905
16 N -0.555 5.555
17 C 0.575 3.425
18 O -0.489 6.489
19 C 0.013 3.987
20 N -0.420 5.420
21 C 0.027 3.973
22 C -0.284 4.284
23 S 0.263 5.737
24 C -0.036 4.036
25 C -0.116 4.116
26 C -0.038 4.038
27 C 0.127 3.873
28 H 0.062 0.938
29 C 0.135 3.865
30 H 0.252 0.748
31 H 0.022 0.978
32 H 0.020 0.980
33 H 0.062 0.938
34 H 0.056 0.944
35 H 0.071 0.929
36 H 0.066 0.934
37 H 0.051 0.949
38 H 0.120 0.880
39 H 0.078 0.922
40 H 0.085 0.915
41 H 0.077 0.923
42 H 0.085 0.915
43 H 0.081 0.919
44 H 0.085 0.915
45 H 0.023 0.977
46 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.640 -11.474 -15.622 20.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.204 4.204
3 Si 0.738 3.262
4 H -0.218 1.218
5 H -0.216 1.216
6 H -0.208 1.208
7 C -0.359 4.359
8 H 0.092 0.908
9 N -0.328 5.328
10 C 0.014 3.986
11 C -0.117 4.117
12 H 0.097 0.903
13 C -0.141 4.141
14 C -0.164 4.164
15 C -0.028 4.028
16 N -0.288 5.288
17 C 0.358 3.642
18 O -0.363 6.363
19 C -0.263 4.263
20 N -0.138 5.138
21 C -0.108 4.108
22 C -0.407 4.407
23 S 0.521 5.479
24 C -0.075 4.075
25 C -0.155 4.155
26 C -0.078 4.078
27 C 0.023 3.977
28 H 0.080 0.920
29 C 0.010 3.990
30 H 0.063 0.937
31 H 0.040 0.960
32 H 0.037 0.963
33 H 0.081 0.919
34 H 0.074 0.926
35 H 0.089 0.911
36 H 0.085 0.915
37 H 0.069 0.931
38 H 0.137 0.863
39 H 0.097 0.903
40 H 0.104 0.896
41 H 0.096 0.904
42 H 0.104 0.896
43 H 0.100 0.900
44 H 0.103 0.897
45 H 0.041 0.959
46 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -6.156 -10.365 -14.531 18.880
hybrid contribution 0.970 0.144 -0.496 1.099
sum -5.186 -10.221 -15.026 18.898
Atomic orbital electron populations
1.69915 1.04440 1.24675 1.56317 1.24820 0.95700 0.97454 1.02422
0.86192 0.78581 0.83984 0.77438 1.21796 1.21645 1.20845 1.18981
0.90288 0.82479 1.44144 0.90755 1.44349 1.01858 0.99718 1.86919
1.21291 0.93601 0.85967 0.97699 1.21259 0.95855 0.95455 0.99096
0.90264 1.20263 1.01524 0.97457 0.94856 1.20878 0.98111 1.00928
0.96527 1.21636 0.94672 0.92698 0.93763 1.46385 1.44929 1.29028
1.08419 1.16865 0.81658 0.82039 0.83655 1.90907 1.49211 1.40657
1.55517 1.27718 1.03896 0.95844 0.98831 1.66373 1.19165 1.28393
0.99864 1.21865 0.99994 0.96149 0.92829 1.26930 1.08651 1.02203
1.02882 1.84024 1.47689 1.22853 0.93306 1.20664 1.02217 0.98488
0.86173 1.22326 0.99369 0.95169 0.98647 1.20856 1.00108 0.99918
0.86926 1.21362 0.96243 1.01280 0.78820 0.92000 1.22485 0.84350
0.91189 1.00965 0.93729 0.95999 0.96259 0.91938 0.92573 0.91056
0.91495 0.93056 0.86314 0.90346 0.89619 0.90442 0.89630 0.90046
0.89654 0.95872 0.84174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.92 10.17 55.49 0.56 -27.35 16
2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16
3 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16
4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
7 C -0.23 -6.73 10.25 -15.06 -0.15 -6.89 16
8 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16
9 N -0.60 -16.27 3.39 -171.19 -0.58 -16.85 16
10 C 0.14 3.07 6.75 -3.40 -0.02 3.05 16
11 C -0.10 -1.77 3.01 -91.61 -0.28 -2.05 16
12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
13 C -0.10 -1.49 4.95 -29.45 -0.15 -1.64 16
14 C -0.13 -1.84 5.82 -29.03 -0.17 -2.00 16
15 C 0.10 1.55 5.22 -5.81 -0.03 1.52 16
16 N -0.56 -10.98 3.09 -171.05 -0.53 -11.51 16
17 C 0.58 12.21 6.96 -12.60 -0.09 12.12 16
18 O -0.49 -11.95 13.98 5.26 0.07 -11.88 16
19 C 0.01 0.24 7.08 -14.76 -0.10 0.14 16
20 N -0.42 -6.72 6.71 -6.78 -0.05 -6.77 16
21 C 0.03 0.36 7.62 -82.49 -0.63 -0.27 16
22 C -0.28 -3.60 7.17 -34.97 -0.25 -3.85 16
23 S 0.26 4.04 23.04 -107.50 -2.48 1.56 16
24 C -0.04 -0.30 6.80 -26.62 -0.18 -0.48 16
25 C -0.12 -0.77 7.11 -25.48 -0.18 -0.96 16
26 C -0.04 -0.34 6.81 -26.23 -0.18 -0.52 16
27 C 0.13 2.67 3.21 -68.76 -0.22 2.44 16
28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
29 C 0.13 3.55 4.68 -3.05 -0.01 3.54 16
30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
31 H 0.02 0.48 6.71 -51.93 -0.35 0.13 16
32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16
34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16
37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.12 2.02 4.66 -60.70 -0.28 1.73 16
39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
45 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16
46 H 0.14 4.07 2.99 -51.97 -0.16 3.92 16
LS Contribution 361.71 15.07 5.45 5.45
Total: -1.00 -34.31 361.71 -11.92 -46.23
By element:
Atomic # 1 Polarization: 5.93 SS G_CDS: -6.62 Total: -0.69 kcal
Atomic # 6 Polarization: 6.59 SS G_CDS: -2.74 Total: 3.85 kcal
Atomic # 7 Polarization: -61.89 SS G_CDS: -0.59 Total: -62.48 kcal
Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal
Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal
Atomic # 16 Polarization: 4.04 SS G_CDS: -2.48 Total: 1.56 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -34.31 -11.92 -46.23 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050095449.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.328 kcal
(2) G-P(sol) polarization free energy of solvation -34.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.019 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.094 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds