Wall clock time and date at job start Wed Apr 1 2020 04:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47145 * 270.00418 * 3 2 1 5 5 H 1.48502 * 109.46781 * 30.00346 * 3 2 1 6 6 H 1.48497 * 109.46942 * 150.00088 * 3 2 1 7 7 C 1.38808 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00566 * 359.71790 * 7 2 1 10 10 C 1.46828 * 125.37937 * 180.02562 * 9 7 2 11 11 C 1.53893 * 107.49982 * 181.00586 * 10 9 7 12 12 H 1.09002 * 109.09160 * 259.49537 * 11 10 9 13 13 C 1.50766 * 110.60064 * 139.42742 * 11 10 9 14 14 C 1.49774 * 114.38368 * 289.67551 * 13 11 10 15 15 C 1.51613 * 111.72423 * 304.40646 * 14 13 11 16 16 N 1.44511 * 112.72019 * 42.27723 * 15 14 13 17 17 C 1.34781 * 116.65282 * 154.44668 * 16 15 14 18 18 O 1.21619 * 119.99692 * 175.66213 * 17 16 15 19 19 C 1.47251 * 120.00137 * 355.66272 * 17 16 15 20 20 N 1.29775 * 125.52185 * 7.72036 * 19 17 16 21 21 C 1.32596 * 116.74868 * 179.85080 * 20 19 17 22 22 C 1.34623 * 114.31274 * 0.41553 * 21 20 19 23 23 S 1.71630 * 109.59890 * 359.80773 * 22 21 20 24 24 C 1.51943 * 110.68946 * 179.82187 * 22 21 20 25 25 C 1.54236 * 104.84541 * 17.40073 * 24 22 21 26 26 C 1.52797 * 136.15122 * 180.02562 * 21 20 19 27 27 C 1.44111 * 126.69594 * 334.41675 * 16 15 14 28 28 H 1.09002 * 109.36054 * 254.44475 * 27 16 15 29 29 C 1.46910 * 125.37345 * 359.70113 * 9 7 2 30 30 H 0.96996 * 119.99795 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.84637 * 300.48759 * 10 9 7 32 32 H 1.08999 * 109.84248 * 61.51708 * 10 9 7 33 33 H 1.09003 * 108.67802 * 50.09116 * 13 11 10 34 34 H 1.09002 * 108.68645 * 168.02930 * 13 11 10 35 35 H 1.08999 * 109.20822 * 183.80243 * 14 13 11 36 36 H 1.08993 * 108.99664 * 64.88325 * 14 13 11 37 37 H 1.08991 * 108.83730 * 281.43951 * 15 14 13 38 38 H 1.09000 * 108.83200 * 163.10496 * 15 14 13 39 39 H 1.08998 * 110.36792 * 136.24311 * 24 22 21 40 40 H 1.08999 * 110.36686 * 258.45243 * 24 22 21 41 41 H 1.08997 * 110.95297 * 91.60986 * 25 24 22 42 42 H 1.08999 * 110.95796 * 215.29885 * 25 24 22 43 43 H 1.08995 * 110.31340 * 43.86893 * 26 21 20 44 44 H 1.09001 * 110.31407 * 281.68292 * 26 21 20 45 45 H 1.08996 * 110.08078 * 281.33939 * 29 9 7 46 46 H 1.09000 * 110.08800 * 42.91527 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 0.0048 10 6 1.9373 -3.7228 0.0054 11 6 0.7960 -4.7550 -0.0136 12 1 0.6453 -5.1385 0.9955 13 6 1.1326 -5.9012 -0.9334 14 6 1.1246 -5.5488 -2.3890 15 6 -0.2013 -4.9486 -2.8139 16 7 -0.7196 -4.0029 -1.8519 17 6 -1.5519 -3.0541 -2.3249 18 8 -2.0856 -2.2760 -1.5576 19 6 -1.8150 -2.9597 -3.7707 20 7 -1.4210 -3.8125 -4.6660 21 6 -1.7590 -3.5575 -5.9226 22 6 -2.4675 -2.4247 -6.0870 23 16 -2.7073 -1.6695 -4.5646 24 6 -2.8059 -2.2111 -7.5528 25 6 -2.5919 -3.5888 -8.2125 26 6 -1.5444 -4.2273 -7.2790 27 6 -0.4387 -3.9703 -0.4389 28 1 -1.3059 -4.3366 0.1106 29 6 -0.1370 -2.5257 0.0175 30 1 -0.4850 0.8400 0.0004 31 1 2.5609 -3.8445 -0.8802 32 1 2.5394 -3.8534 0.9045 33 1 2.1293 -6.2664 -0.6856 34 1 0.4170 -6.7059 -0.7649 35 1 1.3108 -6.4478 -2.9766 36 1 1.9184 -4.8279 -2.5840 37 1 -0.9262 -5.7523 -2.9429 38 1 -0.0679 -4.4412 -3.7693 39 1 -3.8438 -1.8961 -7.6605 40 1 -2.1379 -1.4704 -7.9924 41 1 -3.5158 -4.1671 -8.2157 42 1 -2.1989 -3.4801 -9.2234 43 1 -1.7117 -5.3016 -7.2013 44 1 -0.5378 -4.0258 -7.6456 45 1 -0.5196 -2.3609 1.0248 46 1 -0.5861 -1.8139 -0.6752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050095449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:07 Heat of formation + Delta-G solvation = 77.094427 kcal Electronic energy + Delta-G solvation = -29638.905555 eV Core-core repulsion = 25850.321617 eV Total energy + Delta-G solvation = -3788.583938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.82940 -39.93931 -37.64853 -36.15721 -35.12183 -33.10177 -32.00054 -29.74388 -28.82747 -28.61345 -27.01610 -25.58912 -25.02286 -23.70300 -22.30186 -21.70542 -20.77885 -20.02449 -18.80820 -18.04516 -17.70310 -16.86991 -16.23226 -16.12595 -15.70014 -15.25032 -14.66550 -14.41861 -14.13388 -13.96157 -13.72185 -13.60257 -13.54268 -13.32962 -13.03677 -12.90212 -12.23551 -12.21708 -12.06836 -11.66345 -11.51951 -11.48417 -11.22344 -11.12828 -11.04378 -10.91001 -10.72647 -10.59287 -10.30805 -10.21810 -10.01935 -9.85808 -9.54456 -9.40756 -9.27391 -8.96352 -8.56015 -8.36779 -7.80316 -6.65581 -5.48501 -2.91103 0.43953 1.16571 1.87652 2.41439 3.38393 3.46550 3.51060 3.53688 3.56982 3.86008 4.27828 4.54377 4.59462 4.68950 4.87857 5.08631 5.11956 5.18775 5.27368 5.33827 5.40033 5.41758 5.48996 5.58036 5.59369 5.63279 5.71961 5.80737 5.85598 5.90836 5.93438 6.07267 6.12499 6.16937 6.27085 6.37945 6.53051 6.59066 6.71513 6.78686 6.88312 7.20228 7.50504 7.64668 7.76526 7.82382 8.18510 8.55093 8.72337 9.36284 9.97952 10.61779 11.53620 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.004404 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.457774 B = 6355.954722 C = 7904.586245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.097 4.097 12 H 0.079 0.921 13 C -0.103 4.103 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.555 5.555 17 C 0.575 3.425 18 O -0.489 6.489 19 C 0.013 3.987 20 N -0.420 5.420 21 C 0.027 3.973 22 C -0.284 4.284 23 S 0.263 5.737 24 C -0.036 4.036 25 C -0.116 4.116 26 C -0.038 4.038 27 C 0.127 3.873 28 H 0.062 0.938 29 C 0.135 3.865 30 H 0.252 0.748 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -11.474 -15.622 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.117 4.117 12 H 0.097 0.903 13 C -0.141 4.141 14 C -0.164 4.164 15 C -0.028 4.028 16 N -0.288 5.288 17 C 0.358 3.642 18 O -0.363 6.363 19 C -0.263 4.263 20 N -0.138 5.138 21 C -0.108 4.108 22 C -0.407 4.407 23 S 0.521 5.479 24 C -0.075 4.075 25 C -0.155 4.155 26 C -0.078 4.078 27 C 0.023 3.977 28 H 0.080 0.920 29 C 0.010 3.990 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.156 -10.365 -14.531 18.880 hybrid contribution 0.970 0.144 -0.496 1.099 sum -5.186 -10.221 -15.026 18.898 Atomic orbital electron populations 1.69915 1.04440 1.24675 1.56317 1.24820 0.95700 0.97454 1.02422 0.86192 0.78581 0.83984 0.77438 1.21796 1.21645 1.20845 1.18981 0.90288 0.82479 1.44144 0.90755 1.44349 1.01858 0.99718 1.86919 1.21291 0.93601 0.85967 0.97699 1.21259 0.95855 0.95455 0.99096 0.90264 1.20263 1.01524 0.97457 0.94856 1.20878 0.98111 1.00928 0.96527 1.21636 0.94672 0.92698 0.93763 1.46385 1.44929 1.29028 1.08419 1.16865 0.81658 0.82039 0.83655 1.90907 1.49211 1.40657 1.55517 1.27718 1.03896 0.95844 0.98831 1.66373 1.19165 1.28393 0.99864 1.21865 0.99994 0.96149 0.92829 1.26930 1.08651 1.02203 1.02882 1.84024 1.47689 1.22853 0.93306 1.20664 1.02217 0.98488 0.86173 1.22326 0.99369 0.95169 0.98647 1.20856 1.00108 0.99918 0.86926 1.21362 0.96243 1.01280 0.78820 0.92000 1.22485 0.84350 0.91189 1.00965 0.93729 0.95999 0.96259 0.91938 0.92573 0.91056 0.91495 0.93056 0.86314 0.90346 0.89619 0.90442 0.89630 0.90046 0.89654 0.95872 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 10.17 55.49 0.56 -27.35 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.73 10.25 -15.06 -0.15 -6.89 16 8 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -16.27 3.39 -171.19 -0.58 -16.85 16 10 C 0.14 3.07 6.75 -3.40 -0.02 3.05 16 11 C -0.10 -1.77 3.01 -91.61 -0.28 -2.05 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.10 -1.49 4.95 -29.45 -0.15 -1.64 16 14 C -0.13 -1.84 5.82 -29.03 -0.17 -2.00 16 15 C 0.10 1.55 5.22 -5.81 -0.03 1.52 16 16 N -0.56 -10.98 3.09 -171.05 -0.53 -11.51 16 17 C 0.58 12.21 6.96 -12.60 -0.09 12.12 16 18 O -0.49 -11.95 13.98 5.26 0.07 -11.88 16 19 C 0.01 0.24 7.08 -14.76 -0.10 0.14 16 20 N -0.42 -6.72 6.71 -6.78 -0.05 -6.77 16 21 C 0.03 0.36 7.62 -82.49 -0.63 -0.27 16 22 C -0.28 -3.60 7.17 -34.97 -0.25 -3.85 16 23 S 0.26 4.04 23.04 -107.50 -2.48 1.56 16 24 C -0.04 -0.30 6.80 -26.62 -0.18 -0.48 16 25 C -0.12 -0.77 7.11 -25.48 -0.18 -0.96 16 26 C -0.04 -0.34 6.81 -26.23 -0.18 -0.52 16 27 C 0.13 2.67 3.21 -68.76 -0.22 2.44 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 C 0.13 3.55 4.68 -3.05 -0.01 3.54 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.02 0.48 6.71 -51.93 -0.35 0.13 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 2.02 4.66 -60.70 -0.28 1.73 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.14 4.07 2.99 -51.97 -0.16 3.92 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -34.31 361.71 -11.92 -46.23 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.62 Total: -0.69 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.74 Total: 3.85 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.59 Total: -62.48 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -2.48 Total: 1.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.31 -11.92 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050095449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.328 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds