Wall clock time and date at job start Wed Apr 1 2020 04:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00110 * 2 1 4 4 H 1.48500 * 109.47145 * 270.00418 * 3 2 1 5 5 H 1.48502 * 109.46781 * 30.00346 * 3 2 1 6 6 H 1.48497 * 109.46942 * 150.00088 * 3 2 1 7 7 C 1.38808 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00566 * 359.71790 * 7 2 1 10 10 C 1.46828 * 125.37937 * 180.02562 * 9 7 2 11 11 C 1.53893 * 107.49982 * 181.00586 * 10 9 7 12 12 H 1.09002 * 109.09160 * 259.49537 * 11 10 9 13 13 C 1.50766 * 110.60064 * 139.42742 * 11 10 9 14 14 C 1.49774 * 114.38368 * 289.67551 * 13 11 10 15 15 C 1.51613 * 111.72423 * 304.40646 * 14 13 11 16 16 N 1.44511 * 112.72019 * 42.27723 * 15 14 13 17 17 C 1.34781 * 116.65282 * 154.44668 * 16 15 14 18 18 O 1.21619 * 119.99692 * 175.66213 * 17 16 15 19 19 C 1.47251 * 120.00137 * 355.66272 * 17 16 15 20 20 N 1.29775 * 125.52185 * 7.72036 * 19 17 16 21 21 C 1.32596 * 116.74868 * 179.85080 * 20 19 17 22 22 C 1.34623 * 114.31274 * 0.41553 * 21 20 19 23 23 S 1.71630 * 109.59890 * 359.80773 * 22 21 20 24 24 C 1.51943 * 110.68946 * 179.82187 * 22 21 20 25 25 C 1.54236 * 104.84541 * 17.40073 * 24 22 21 26 26 C 1.52797 * 136.15122 * 180.02562 * 21 20 19 27 27 C 1.44111 * 126.69594 * 334.41675 * 16 15 14 28 28 H 1.09002 * 109.36054 * 254.44475 * 27 16 15 29 29 C 1.46910 * 125.37345 * 359.70113 * 9 7 2 30 30 H 0.96996 * 119.99795 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.84637 * 300.48759 * 10 9 7 32 32 H 1.08999 * 109.84248 * 61.51708 * 10 9 7 33 33 H 1.09003 * 108.67802 * 50.09116 * 13 11 10 34 34 H 1.09002 * 108.68645 * 168.02930 * 13 11 10 35 35 H 1.08999 * 109.20822 * 183.80243 * 14 13 11 36 36 H 1.08993 * 108.99664 * 64.88325 * 14 13 11 37 37 H 1.08991 * 108.83730 * 281.43951 * 15 14 13 38 38 H 1.09000 * 108.83200 * 163.10496 * 15 14 13 39 39 H 1.08998 * 110.36792 * 136.24311 * 24 22 21 40 40 H 1.08999 * 110.36686 * 258.45243 * 24 22 21 41 41 H 1.08997 * 110.95297 * 91.60986 * 25 24 22 42 42 H 1.08999 * 110.95796 * 215.29885 * 25 24 22 43 43 H 1.08995 * 110.31340 * 43.86893 * 26 21 20 44 44 H 1.09001 * 110.31407 * 281.68292 * 26 21 20 45 45 H 1.08996 * 110.08078 * 281.33939 * 29 9 7 46 46 H 1.09000 * 110.08800 * 42.91527 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 0.0048 10 6 1.9373 -3.7228 0.0054 11 6 0.7960 -4.7550 -0.0136 12 1 0.6453 -5.1385 0.9955 13 6 1.1326 -5.9012 -0.9334 14 6 1.1246 -5.5488 -2.3890 15 6 -0.2013 -4.9486 -2.8139 16 7 -0.7196 -4.0029 -1.8519 17 6 -1.5519 -3.0541 -2.3249 18 8 -2.0856 -2.2760 -1.5576 19 6 -1.8150 -2.9597 -3.7707 20 7 -1.4210 -3.8125 -4.6660 21 6 -1.7590 -3.5575 -5.9226 22 6 -2.4675 -2.4247 -6.0870 23 16 -2.7073 -1.6695 -4.5646 24 6 -2.8059 -2.2111 -7.5528 25 6 -2.5919 -3.5888 -8.2125 26 6 -1.5444 -4.2273 -7.2790 27 6 -0.4387 -3.9703 -0.4389 28 1 -1.3059 -4.3366 0.1106 29 6 -0.1370 -2.5257 0.0175 30 1 -0.4850 0.8400 0.0004 31 1 2.5609 -3.8445 -0.8802 32 1 2.5394 -3.8534 0.9045 33 1 2.1293 -6.2664 -0.6856 34 1 0.4170 -6.7059 -0.7649 35 1 1.3108 -6.4478 -2.9766 36 1 1.9184 -4.8279 -2.5840 37 1 -0.9262 -5.7523 -2.9429 38 1 -0.0679 -4.4412 -3.7693 39 1 -3.8438 -1.8961 -7.6605 40 1 -2.1379 -1.4704 -7.9924 41 1 -3.5158 -4.1671 -8.2157 42 1 -2.1989 -3.4801 -9.2234 43 1 -1.7117 -5.3016 -7.2013 44 1 -0.5378 -4.0258 -7.6456 45 1 -0.5196 -2.3609 1.0248 46 1 -0.5861 -1.8139 -0.6752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050095449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:06 Heat of formation + Delta-G solvation = 55.388076 kcal Electronic energy + Delta-G solvation = -29639.846813 eV Core-core repulsion = 25850.321617 eV Total energy + Delta-G solvation = -3789.525196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24029 -41.13970 -39.23077 -37.35104 -36.63449 -34.68923 -33.83504 -31.57856 -29.95895 -29.52823 -28.54299 -27.34844 -26.44546 -25.21648 -23.60868 -23.07877 -22.21961 -21.28031 -20.16907 -19.34320 -19.05313 -18.77756 -17.65388 -17.37410 -17.12442 -16.67440 -16.42562 -15.86066 -15.75986 -15.38184 -15.23538 -14.83628 -14.68715 -14.43152 -14.26584 -13.84700 -13.73799 -13.68542 -13.62923 -13.16922 -13.04325 -12.93388 -12.73400 -12.51673 -12.19376 -12.13635 -12.08432 -12.07406 -11.87470 -11.76918 -11.70339 -11.48768 -11.34216 -11.00219 -10.64750 -10.49464 -10.27071 -9.64085 -9.36714 -8.83034 -7.71625 -5.18524 -0.78879 -0.02984 0.73974 1.23394 1.40436 1.43674 1.52638 1.95826 2.13791 2.48368 2.67703 3.34612 3.44894 3.51189 3.66975 3.69840 3.87611 3.98316 4.02488 4.08692 4.13572 4.18127 4.43157 4.52874 4.58821 4.61622 4.68213 4.72458 4.76548 4.83894 4.89360 4.91418 4.92322 5.07610 5.13013 5.14468 5.19333 5.30572 5.33902 5.34480 5.42104 5.45928 5.50934 5.77725 6.01347 6.23537 6.41338 6.54063 7.07996 7.12466 7.82547 8.44908 9.27453 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.004404 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.457774 B = 6355.954722 C = 7904.586245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.135 3.865 11 C -0.087 4.087 12 H 0.095 0.905 13 C -0.099 4.099 14 C -0.122 4.122 15 C 0.092 3.908 16 N -0.557 5.557 17 C 0.566 3.434 18 O -0.540 6.540 19 C -0.032 4.032 20 N -0.410 5.410 21 C 0.003 3.997 22 C -0.261 4.261 23 S 0.238 5.762 24 C -0.040 4.040 25 C -0.103 4.103 26 C -0.036 4.036 27 C 0.136 3.864 28 H 0.064 0.936 29 C 0.135 3.865 30 H 0.243 0.757 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.096 0.904 45 H -0.023 1.023 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -13.874 -19.032 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.106 4.106 12 H 0.114 0.886 13 C -0.137 4.137 14 C -0.160 4.160 15 C -0.029 4.029 16 N -0.288 5.288 17 C 0.350 3.650 18 O -0.418 6.418 19 C -0.306 4.306 20 N -0.129 5.129 21 C -0.132 4.132 22 C -0.384 4.384 23 S 0.496 5.504 24 C -0.080 4.080 25 C -0.142 4.142 26 C -0.076 4.076 27 C 0.031 3.969 28 H 0.082 0.918 29 C 0.009 3.991 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.115 0.885 45 H -0.005 1.005 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.068 -12.834 -17.948 22.639 hybrid contribution 0.617 0.896 0.436 1.172 sum -4.451 -11.938 -17.512 21.656 Atomic orbital electron populations 1.70229 1.06054 1.24667 1.57476 1.25709 0.96566 1.01009 1.02655 0.85120 0.77711 0.79338 0.77425 1.21367 1.22017 1.19164 1.19393 0.90822 0.83822 1.43570 0.90208 1.44636 1.02375 1.01146 1.86828 1.21515 0.94955 0.84681 0.97837 1.21300 0.92567 0.95472 1.01245 0.88645 1.20273 1.03666 0.96081 0.93681 1.20922 0.95895 1.01888 0.97285 1.21847 0.96194 0.92277 0.92622 1.46511 1.44486 1.29460 1.08313 1.17354 0.81103 0.81504 0.84999 1.90863 1.51272 1.42421 1.57228 1.27082 1.07518 0.98183 0.97834 1.66315 1.18086 1.27727 1.00801 1.22741 1.00007 0.97168 0.93266 1.27595 1.06418 1.00721 1.03620 1.84045 1.47644 1.23136 0.95579 1.21006 1.03629 1.00440 0.82878 1.22394 0.99263 0.93268 0.99313 1.21099 1.01619 1.00528 0.84329 1.21058 0.97729 0.98124 0.79985 0.91842 1.22222 0.84165 0.94643 0.98028 0.94761 0.95520 0.95745 0.89498 0.89891 0.86940 0.93658 0.91275 0.86962 0.88634 0.88075 0.89408 0.86476 0.88828 0.88532 1.00489 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.32 10.17 21.65 0.22 -61.10 16 2 C -0.07 -4.04 5.48 84.86 0.47 -3.57 16 3 Si 0.98 48.85 29.55 68.60 2.03 50.88 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 5 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.25 -14.94 10.25 84.03 0.86 -14.08 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.62 -35.10 3.39 -695.52 -2.36 -37.45 16 10 C 0.14 5.92 6.75 86.62 0.58 6.51 16 11 C -0.09 -3.07 3.01 -11.44 -0.03 -3.11 16 12 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 13 C -0.10 -2.54 4.95 28.83 0.14 -2.40 16 14 C -0.12 -3.19 5.82 29.10 0.17 -3.02 16 15 C 0.09 2.90 5.22 86.30 0.45 3.35 16 16 N -0.56 -22.61 3.09 -813.34 -2.51 -25.12 16 17 C 0.57 25.56 6.96 86.61 0.60 26.16 16 18 O -0.54 -28.85 13.98 -4.09 -0.06 -28.91 16 19 C -0.03 -1.21 7.08 87.37 0.62 -0.60 16 20 N -0.41 -13.02 6.71 -175.38 -1.18 -14.19 16 21 C 0.00 0.08 7.62 42.29 0.32 0.41 16 22 C -0.26 -6.22 7.17 25.25 0.18 -6.04 16 23 S 0.24 7.64 23.04 -56.49 -1.30 6.34 16 24 C -0.04 -0.53 6.80 30.66 0.21 -0.32 16 25 C -0.10 -0.88 7.11 31.41 0.22 -0.66 16 26 C -0.04 -0.51 6.81 30.92 0.21 -0.30 16 27 C 0.14 5.90 3.21 45.72 0.15 6.05 16 28 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 29 C 0.13 7.59 4.68 86.80 0.41 8.00 16 30 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.03 1.15 6.71 -2.39 -0.02 1.13 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.38 7.10 -2.39 -0.02 1.37 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.11 3.74 4.66 -19.70 -0.09 3.65 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 46 H 0.12 7.28 2.99 -2.98 -0.01 7.27 16 Total: -1.00 -82.67 361.71 1.32 -81.35 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.92 Total: 11.84 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.56 Total: 16.38 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.83 Total: -137.87 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.06 Total: -28.91 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -1.30 Total: 6.34 kcal Total: -82.67 1.32 -81.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050095449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.735 kcal (2) G-P(sol) polarization free energy of solvation -82.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds