Wall clock time and date at job start Wed Apr 1 2020 04:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47146 * 239.99591 * 3 2 1 5 5 H 1.48496 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47273 * 119.99987 * 3 2 1 7 7 C 1.38809 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99983 * 197.64928 * 7 2 1 9 9 N 1.36937 * 120.00287 * 17.65489 * 7 2 1 10 10 C 1.46881 * 120.49609 * 208.41614 * 9 7 2 11 11 C 1.53325 * 108.76642 * 235.58017 * 10 9 7 12 12 C 1.52655 * 109.21706 * 307.57226 * 11 10 9 13 13 C 1.53492 * 113.60901 * 285.94545 * 12 11 10 14 14 N 1.47666 * 85.99063 * 269.03136 * 13 12 11 15 15 C 1.34779 * 134.46436 * 155.67076 * 14 13 12 16 16 O 1.21614 * 120.00408 * 180.02562 * 15 14 13 17 17 C 1.47255 * 119.99247 * 0.02562 * 15 14 13 18 18 N 1.29772 * 125.52377 * 179.97438 * 17 15 14 19 19 C 1.32593 * 116.75613 * 179.97438 * 18 17 15 20 20 C 1.34631 * 114.30726 * 0.04258 * 19 18 17 21 21 S 1.71623 * 109.60034 * 359.66957 * 20 19 18 22 22 C 1.51944 * 110.68419 * 179.97438 * 20 19 18 23 23 C 1.54238 * 104.85053 * 342.61611 * 22 20 19 24 24 C 1.52790 * 136.15912 * 180.08210 * 19 18 17 25 25 C 1.47670 * 91.08421 * 335.67916 * 14 13 12 26 26 C 1.52796 * 113.13007 * 57.40346 * 12 11 10 27 27 C 1.46897 * 120.49411 * 28.38808 * 9 7 2 28 28 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59027 * 115.79510 * 10 9 7 30 30 H 1.08999 * 109.59063 * 355.36853 * 10 9 7 31 31 H 1.09005 * 109.52137 * 67.50833 * 11 10 9 32 32 H 1.08998 * 109.52171 * 187.63154 * 11 10 9 33 33 H 1.09000 * 113.79228 * 23.30062 * 13 12 11 34 34 H 1.09002 * 113.79145 * 154.76871 * 13 12 11 35 35 H 1.08998 * 110.36594 * 223.77530 * 22 20 19 36 36 H 1.09003 * 110.45526 * 101.50283 * 22 20 19 37 37 H 1.08993 * 110.95319 * 268.38730 * 23 22 20 38 38 H 1.08995 * 110.95175 * 144.65981 * 23 22 20 39 39 H 1.09005 * 110.31750 * 316.46260 * 24 19 18 40 40 H 1.09004 * 110.31293 * 78.63991 * 24 19 18 41 41 H 1.09007 * 113.78745 * 270.05079 * 25 14 13 42 42 H 1.08998 * 113.79482 * 138.58694 * 25 14 13 43 43 H 1.09005 * 109.50859 * 182.67985 * 26 12 11 44 44 H 1.09006 * 109.55580 * 62.55048 * 26 12 11 45 45 H 1.09001 * 109.58525 * 244.19933 * 27 9 7 46 46 H 1.08991 * 109.58775 * 4.63252 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0521 -1.2241 0.2841 9 7 1.3739 -2.3603 -0.3586 10 6 1.8107 -3.6514 0.1889 11 6 2.1297 -4.5979 -0.9743 12 6 0.9380 -4.6423 -1.9273 13 6 -0.2525 -5.4457 -1.3858 14 7 0.3565 -6.6077 -2.0636 15 6 0.2955 -7.9425 -1.8869 16 8 0.9237 -8.6823 -2.6197 17 6 -0.5321 -8.5050 -0.8065 18 7 -0.6688 -9.7678 -0.5410 19 6 -1.4598 -10.0818 0.4758 20 6 -2.0152 -9.0223 1.0935 21 16 -1.4885 -7.5741 0.3380 22 6 -2.9027 -9.4746 2.2410 23 6 -3.1678 -10.9697 1.9701 24 6 -1.9226 -11.3697 1.1552 25 6 1.0596 -5.7213 -3.0125 26 6 0.5522 -3.2672 -2.4703 27 6 0.2439 -2.3300 -1.2967 28 1 -0.4849 0.8400 -0.0004 29 1 1.0145 -4.0777 0.7991 30 1 2.7031 -3.5070 0.7979 31 1 3.0091 -4.2364 -1.5074 32 1 2.3241 -5.5982 -0.5872 33 1 -0.2688 -5.5293 -0.2992 34 1 -1.2128 -5.1457 -1.8054 35 1 -3.8391 -8.9169 2.2388 36 1 -2.3882 -9.3471 3.1935 37 1 -4.0763 -11.1043 1.3833 38 1 -3.2209 -11.5313 2.9027 39 1 -2.1829 -12.1194 0.4079 40 1 -1.1443 -11.7489 1.8175 41 1 0.4892 -5.5030 -3.9155 42 1 2.0862 -6.0238 -3.2188 43 1 -0.3302 -3.3604 -3.1035 44 1 1.3780 -2.8606 -3.0541 45 1 -0.6610 -2.6646 -0.7897 46 1 0.1036 -1.3145 -1.6670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050591210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:35 Heat of formation + Delta-G solvation = 56.424626 kcal Electronic energy + Delta-G solvation = -28286.762666 eV Core-core repulsion = 24497.282417 eV Total energy + Delta-G solvation = -3789.480248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04721 -41.40256 -39.59877 -37.52967 -36.84344 -34.28109 -32.38367 -31.49612 -30.11851 -29.60468 -28.51721 -27.47575 -26.43704 -25.23064 -23.93167 -22.87343 -22.32263 -21.05237 -19.96053 -19.49136 -19.25997 -18.39687 -17.96273 -17.18855 -17.03576 -16.77661 -16.64861 -15.68006 -15.59954 -15.26757 -15.17131 -15.03234 -14.66133 -14.53102 -14.33844 -14.05795 -13.92456 -13.78980 -13.38989 -13.15274 -13.06505 -12.99653 -12.87123 -12.52773 -12.36198 -12.25813 -12.15726 -12.03883 -11.93144 -11.78603 -11.68683 -11.32231 -11.23836 -11.05212 -10.72602 -10.55979 -10.43958 -9.96748 -9.64469 -8.59499 -7.82242 -5.26141 -0.87606 -0.04266 0.57204 1.09662 1.33149 1.50623 1.52878 1.58770 1.98554 2.55668 2.67421 3.21623 3.31352 3.39493 3.44108 3.69715 3.81062 3.92101 3.94114 4.11464 4.18534 4.29924 4.37911 4.40566 4.48345 4.51769 4.58190 4.63512 4.69890 4.71385 4.79240 4.80796 4.84776 4.95830 5.06492 5.06755 5.10872 5.14207 5.18741 5.27269 5.33529 5.38822 5.59559 5.71623 5.86484 6.30003 6.43355 6.46337 6.79935 7.22584 7.93932 8.43543 9.22897 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.002739 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.668690 B =10221.974197 C =11263.102830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.261 4.261 8 H 0.061 0.939 9 N -0.607 5.607 10 C 0.146 3.854 11 C -0.099 4.099 12 C -0.068 4.068 13 C 0.102 3.898 14 N -0.629 5.629 15 C 0.613 3.387 16 O -0.557 6.557 17 C -0.030 4.030 18 N -0.432 5.432 19 C 0.002 3.998 20 C -0.255 4.255 21 S 0.243 5.757 22 C -0.042 4.042 23 C -0.104 4.104 24 C -0.042 4.042 25 C 0.123 3.877 26 C -0.112 4.112 27 C 0.175 3.825 28 H 0.250 0.750 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.008 0.992 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -17.906 2.559 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.240 4.240 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.330 5.330 10 C 0.020 3.980 11 C -0.138 4.138 12 C -0.069 4.069 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.399 3.601 16 O -0.436 6.436 17 C -0.305 4.305 18 N -0.148 5.148 19 C -0.134 4.134 20 C -0.378 4.378 21 S 0.500 5.500 22 C -0.082 4.082 23 C -0.143 4.143 24 C -0.081 4.081 25 C 0.003 3.997 26 C -0.152 4.152 27 C 0.050 3.950 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.138 -17.626 1.995 19.516 hybrid contribution 0.513 0.210 0.140 0.572 sum -7.624 -17.416 2.135 19.131 Atomic orbital electron populations 1.70139 1.06311 1.25799 1.55186 1.25640 0.95946 1.00965 1.01408 0.85485 0.77703 0.79964 0.78125 1.20658 1.22103 1.20599 1.19404 0.92898 0.86268 1.40592 0.92166 1.44255 1.37288 1.01842 1.49647 1.20968 0.97263 0.86050 0.93710 1.21628 0.96562 0.98811 0.96839 1.21846 0.95230 0.94227 0.95591 1.23705 0.98903 0.80554 0.98838 1.49904 1.48649 1.02259 1.35558 1.16474 0.80350 0.81022 0.82216 1.90787 1.46270 1.59070 1.47508 1.26766 1.07683 0.91733 1.04283 1.65675 1.15929 1.17024 1.16222 1.22491 0.97337 1.00363 0.93188 1.27746 1.06424 0.97443 1.06137 1.83897 1.37851 1.05899 1.22325 1.21022 0.97465 0.96962 0.92711 1.22385 0.96592 0.93693 1.01620 1.21114 0.98662 0.90438 0.97933 1.23573 0.98509 0.83817 0.93819 1.21963 1.01603 0.93155 0.98434 1.20651 0.87942 0.98012 0.88441 0.94111 0.96242 0.93199 0.91595 0.92010 0.89830 0.86603 0.88274 0.87609 0.89556 0.86377 0.89748 0.88588 0.86814 0.89651 0.89713 0.92044 0.97355 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.75 11.21 21.65 0.24 -51.51 16 2 C -0.04 -2.32 4.90 84.86 0.42 -1.91 16 3 Si 0.96 43.20 29.59 68.60 2.03 45.22 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.26 -13.63 9.56 84.03 0.80 -12.82 16 8 H 0.06 3.12 7.89 -2.91 -0.02 3.09 16 9 N -0.61 -27.92 2.96 -698.78 -2.07 -29.99 16 10 C 0.15 5.54 6.38 86.42 0.55 6.09 16 11 C -0.10 -3.07 5.20 30.59 0.16 -2.91 16 12 C -0.07 -1.86 0.78 -51.99 -0.04 -1.90 16 13 C 0.10 2.58 6.14 86.32 0.53 3.11 16 14 N -0.63 -17.62 3.44 -846.42 -2.91 -20.53 16 15 C 0.61 20.75 8.04 86.61 0.70 21.44 16 16 O -0.56 -22.94 17.79 -4.07 -0.07 -23.02 16 17 C -0.03 -0.92 7.43 87.37 0.65 -0.27 16 18 N -0.43 -14.06 10.58 -175.37 -1.86 -15.91 16 19 C 0.00 0.04 7.62 42.29 0.32 0.37 16 20 C -0.25 -5.25 7.17 25.26 0.18 -5.07 16 21 S 0.24 5.64 19.92 -56.49 -1.13 4.52 16 22 C -0.04 -0.48 6.80 30.67 0.21 -0.27 16 23 C -0.10 -0.85 7.11 31.39 0.22 -0.63 16 24 C -0.04 -0.63 6.80 30.90 0.21 -0.42 16 25 C 0.12 3.05 7.97 86.32 0.69 3.73 16 26 C -0.11 -3.44 5.26 30.63 0.16 -3.27 16 27 C 0.18 7.38 5.25 86.41 0.45 7.83 16 28 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.02 0.74 7.52 -2.39 -0.02 0.72 16 30 H 0.05 1.93 7.92 -2.39 -0.02 1.91 16 31 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 32 H 0.06 1.81 8.01 -2.39 -0.02 1.79 16 33 H 0.08 2.17 5.74 -2.39 -0.01 2.15 16 34 H 0.12 2.50 8.07 -2.39 -0.02 2.48 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.11 2.30 8.09 -2.38 -0.02 2.28 16 42 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 43 H 0.08 2.12 8.12 -2.38 -0.02 2.10 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 46 H 0.06 2.78 5.97 -2.39 -0.01 2.76 16 Total: -1.00 -71.87 376.18 1.44 -70.42 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.99 Total: 7.68 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.21 Total: 13.11 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.59 Total: -117.94 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.13 Total: 4.52 kcal Total: -71.87 1.44 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050591210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.849 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds