Wall clock time and date at job start Wed Apr 1 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47037 * 267.66997 * 3 2 1 5 5 H 1.48501 * 109.46987 * 27.66805 * 3 2 1 6 6 H 1.48493 * 109.47349 * 147.66761 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00623 * 338.01174 * 7 2 1 9 9 N 1.36944 * 119.99652 * 158.00776 * 7 2 1 10 10 C 1.46889 * 120.46240 * 149.70372 * 9 7 2 11 11 C 1.53356 * 108.74158 * 124.38882 * 10 9 7 12 12 C 1.52559 * 109.12601 * 52.26171 * 11 10 9 13 13 C 1.52955 * 114.06120 * 75.53904 * 12 11 10 14 14 N 1.47159 * 87.85340 * 139.44234 * 13 12 11 15 15 C 1.34783 * 136.00225 * 153.33983 * 14 13 12 16 16 O 1.21629 * 119.99513 * 359.97438 * 15 14 13 17 17 C 1.47260 * 119.99867 * 180.02562 * 15 14 13 18 18 C 1.35209 * 123.14149 * 179.97438 * 17 15 14 19 19 S 1.70940 * 108.83090 * 180.02562 * 18 17 15 20 20 C 1.70770 * 91.12831 * 0.02562 * 19 18 17 21 21 C 1.50703 * 124.72213 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.49464 * 8.70248 * 21 20 19 23 23 C 1.53004 * 117.49464 * 300.04518 * 21 20 19 24 24 N 1.28652 * 110.55803 * 359.97438 * 20 19 18 25 25 C 1.47171 * 87.99667 * 333.59194 * 14 13 12 26 26 C 1.52551 * 113.43041 * 302.66732 * 12 11 10 27 27 C 1.46881 * 120.46251 * 329.73117 * 9 7 2 28 28 H 0.97002 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.59276 * 4.61726 * 10 9 7 30 30 H 1.09000 * 109.59414 * 244.16720 * 10 9 7 31 31 H 1.08999 * 109.53113 * 292.36938 * 11 10 9 32 32 H 1.08996 * 109.58975 * 172.19435 * 11 10 9 33 33 H 1.09000 * 113.49065 * 24.69736 * 13 12 11 34 34 H 1.09003 * 113.54929 * 254.19933 * 13 12 11 35 35 H 1.08001 * 125.58513 * 0.05688 * 18 17 15 36 36 H 1.08991 * 115.55273 * 154.37220 * 21 20 19 37 37 H 1.08993 * 117.50136 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49504 * 145.02948 * 22 21 20 39 39 H 1.08995 * 117.49425 * 214.97794 * 23 21 20 40 40 H 1.08998 * 117.49795 * 359.97437 * 23 21 20 41 41 H 1.09005 * 113.48360 * 141.15783 * 25 14 13 42 42 H 1.08999 * 113.48776 * 271.66143 * 25 14 13 43 43 H 1.08994 * 109.52680 * 177.21237 * 26 12 11 44 44 H 1.08993 * 109.53355 * 297.42476 * 26 12 11 45 45 H 1.09004 * 109.59370 * 355.38073 * 27 9 7 46 46 H 1.09001 * 109.59537 * 115.82165 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5470 2.0179 -1.3989 5 1 1.4238 2.6664 0.6501 6 1 3.5222 1.4550 0.7488 7 6 2.0102 -1.2021 0.0005 8 1 1.5292 -2.1033 0.3511 9 7 3.3049 -1.2454 -0.4436 10 6 4.2506 -2.2224 0.1123 11 6 4.8404 -3.0470 -1.0384 12 6 5.3935 -2.1006 -2.0994 13 6 6.7231 -1.4467 -1.7196 14 7 7.1578 -1.6518 -3.1105 15 6 8.0260 -1.0571 -3.9527 16 8 8.6721 -0.0959 -3.5811 17 6 8.1914 -1.5705 -5.3229 18 6 9.0427 -1.0232 -6.2196 19 16 8.9416 -1.9006 -7.6831 20 6 7.7688 -2.9463 -7.0144 21 6 7.1231 -4.0933 -7.7484 22 6 7.6920 -4.4644 -9.1194 23 6 6.3341 -3.7650 -9.0176 24 7 7.5139 -2.6195 -5.7965 25 6 6.2239 -2.7871 -3.1805 26 6 4.3540 -1.1260 -2.6442 27 6 3.7675 -0.3153 -1.4819 28 1 -0.4851 0.8400 0.0004 29 1 3.7290 -2.8827 0.8052 30 1 5.0514 -1.6994 0.6350 31 1 4.0610 -3.6703 -1.4768 32 1 5.6433 -3.6798 -0.6604 33 1 7.2991 -2.0224 -0.9951 34 1 6.6289 -0.3963 -1.4442 35 1 9.6823 -0.1716 -6.0403 36 1 6.7526 -4.9039 -7.1211 37 1 8.5335 -3.8793 -9.4902 38 1 7.6953 -5.5192 -9.3941 39 1 5.4449 -4.3601 -9.2253 40 1 6.2818 -2.7195 -9.3214 41 1 5.7079 -2.8666 -4.1374 42 1 6.6628 -3.7311 -2.8575 43 1 4.8264 -0.4507 -3.3575 44 1 3.5577 -1.6816 -3.1392 45 1 2.9277 0.2807 -1.8393 46 1 4.5346 0.3404 -1.0699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050769932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:29 Heat of formation + Delta-G solvation = 104.614536 kcal Electronic energy + Delta-G solvation = -28333.672270 eV Core-core repulsion = 24546.281693 eV Total energy + Delta-G solvation = -3787.390577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08112 -40.06440 -38.29372 -37.35145 -36.14482 -32.51574 -30.97000 -30.61265 -30.47829 -27.84759 -26.46120 -25.70233 -24.14591 -23.14971 -22.95154 -22.87947 -21.19389 -20.72532 -19.43439 -18.32270 -18.11376 -16.75784 -16.61455 -16.29575 -15.94748 -15.79399 -15.23391 -15.01525 -14.74019 -14.19387 -14.07379 -13.77054 -13.65036 -13.51079 -13.15780 -12.79368 -12.74629 -12.46924 -12.31180 -12.07175 -11.99840 -11.70289 -11.68509 -11.54347 -11.34649 -11.08194 -10.72534 -10.56183 -10.43788 -10.31122 -10.12439 -9.90457 -9.89535 -9.79691 -9.58640 -9.45641 -9.15640 -8.60907 -8.51906 -6.90953 -5.94929 -3.30829 0.19824 0.85916 1.26620 1.72272 2.86546 3.18939 3.31739 3.35663 3.51349 3.53031 3.55713 4.23084 4.31826 4.39698 4.49364 4.55996 4.70216 4.81619 4.94914 5.00816 5.05352 5.08895 5.19801 5.28028 5.39019 5.43514 5.44577 5.50003 5.53783 5.58051 5.68377 5.80810 5.86078 5.99268 6.02750 6.07890 6.20714 6.34761 6.40424 6.50411 6.66319 6.71751 6.75245 6.95715 7.16271 7.72941 8.01522 8.10783 8.35769 8.97582 9.74360 10.13673 11.21161 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.002756 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.311725 B =10155.658651 C =10616.691381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.149 3.851 11 C -0.116 4.116 12 C -0.082 4.082 13 C 0.113 3.887 14 N -0.623 5.623 15 C 0.617 3.383 16 O -0.541 6.541 17 C 0.025 3.975 18 C -0.231 4.231 19 S 0.203 5.797 20 C 0.057 3.943 21 C -0.085 4.085 22 C -0.169 4.169 23 C -0.158 4.158 24 N -0.433 5.433 25 C 0.117 3.883 26 C -0.105 4.105 27 C 0.130 3.870 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.524 -10.132 -18.978 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.707 3.293 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.083 4.083 13 C -0.009 4.009 14 N -0.355 5.355 15 C 0.403 3.597 16 O -0.420 6.420 17 C -0.110 4.110 18 C -0.373 4.373 19 S 0.461 5.539 20 C -0.222 4.222 21 C -0.107 4.107 22 C -0.208 4.208 23 C -0.197 4.197 24 N -0.148 5.148 25 C -0.005 4.005 26 C -0.144 4.144 27 C 0.004 3.996 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.207 0.793 36 H 0.154 0.846 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 18.953 -9.634 -19.502 28.851 hybrid contribution 0.443 1.409 0.954 1.758 sum 19.396 -8.225 -18.548 28.069 Atomic orbital electron populations 1.69859 1.05802 1.26610 1.52596 1.25334 0.95154 0.97549 0.99169 0.87038 0.79982 0.84788 0.77448 1.21378 1.23065 1.19750 1.18889 0.85811 0.94667 1.39547 0.89853 1.44324 1.08846 1.38726 1.40875 1.20935 0.92254 0.91473 0.93076 1.21862 0.99915 0.97076 0.96698 1.21695 0.93459 0.97018 0.96090 1.23162 0.92721 1.02434 0.82601 1.49325 1.39546 1.32550 1.14125 1.16498 0.78342 0.82432 0.82391 1.90816 1.46776 1.27555 1.76809 1.20338 0.98314 0.95351 0.97013 1.26613 1.05886 1.07262 0.97538 1.82693 1.36415 1.21685 1.13087 1.26255 1.00510 1.01644 0.93774 1.20415 1.04219 0.96303 0.89748 1.23171 0.97611 1.02603 0.97374 1.23180 0.95788 1.02409 0.98325 1.66908 1.23318 1.13461 1.11067 1.23119 0.87555 0.89460 1.00409 1.21692 0.96744 0.97382 0.98595 1.21331 0.97559 0.92170 0.88503 0.92774 0.91629 0.95954 0.91074 0.92263 0.89647 0.90237 0.79337 0.84638 0.88391 0.87084 0.87181 0.88169 0.89477 0.90064 0.92890 0.90983 0.90685 0.96029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 2 C 0.03 0.79 5.17 -17.43 -0.09 0.70 16 3 Si 0.88 22.68 24.57 -169.99 -4.18 18.51 16 4 H -0.29 -7.18 6.44 56.52 0.36 -6.81 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 6 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.26 -7.21 9.97 -15.06 -0.15 -7.36 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 N -0.60 -14.08 2.68 -172.18 -0.46 -14.55 16 10 C 0.15 2.79 6.42 -3.65 -0.02 2.76 16 11 C -0.12 -1.74 5.31 -26.77 -0.14 -1.88 16 12 C -0.08 -1.25 0.83 -155.18 -0.13 -1.38 16 13 C 0.11 1.72 7.56 -8.22 -0.06 1.66 16 14 N -0.62 -9.69 3.46 -186.68 -0.65 -10.34 16 15 C 0.62 10.27 8.05 -12.59 -0.10 10.17 16 16 O -0.54 -10.44 17.49 5.25 0.09 -10.35 16 17 C 0.02 0.34 6.69 -84.53 -0.57 -0.22 16 18 C -0.23 -2.59 10.62 29.65 0.31 -2.28 16 19 S 0.20 1.61 21.65 -107.50 -2.33 -0.72 16 20 C 0.06 0.56 6.99 -13.61 -0.10 0.47 16 21 C -0.09 -0.60 6.33 -91.77 -0.58 -1.18 16 22 C -0.17 -0.78 10.01 -26.69 -0.27 -1.05 16 23 C -0.16 -0.87 10.24 -26.69 -0.27 -1.14 16 24 N -0.43 -5.50 8.76 -8.51 -0.07 -5.58 16 25 C 0.12 1.59 6.76 -8.37 -0.06 1.54 16 26 C -0.10 -1.90 5.26 -26.77 -0.14 -2.04 16 27 C 0.13 2.86 4.14 -3.65 -0.02 2.85 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.07 1.22 7.92 -51.92 -0.41 0.81 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 34 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 35 H 0.19 1.93 8.03 -52.49 -0.42 1.51 16 36 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.40 7.21 -51.93 -0.37 0.03 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.21 7.29 -51.93 -0.38 0.83 16 42 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.08 1.83 4.66 -51.93 -0.24 1.59 16 46 H 0.02 0.48 6.93 -51.93 -0.36 0.12 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -33.81 378.71 -10.30 -44.11 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.81 Total: -1.42 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.38 Total: 1.61 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.41 Total: -57.44 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.18 Total: 18.51 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.33 Total: -0.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.81 -10.30 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050769932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.723 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds