Wall clock time and date at job start Wed Apr 1 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99937 * 2 1 4 4 H 1.48501 * 109.47037 * 267.66997 * 3 2 1 5 5 H 1.48501 * 109.46987 * 27.66805 * 3 2 1 6 6 H 1.48493 * 109.47349 * 147.66761 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00623 * 338.01174 * 7 2 1 9 9 N 1.36944 * 119.99652 * 158.00776 * 7 2 1 10 10 C 1.46889 * 120.46240 * 149.70372 * 9 7 2 11 11 C 1.53356 * 108.74158 * 124.38882 * 10 9 7 12 12 C 1.52559 * 109.12601 * 52.26171 * 11 10 9 13 13 C 1.52955 * 114.06120 * 75.53904 * 12 11 10 14 14 N 1.47159 * 87.85340 * 139.44234 * 13 12 11 15 15 C 1.34783 * 136.00225 * 153.33983 * 14 13 12 16 16 O 1.21629 * 119.99513 * 359.97438 * 15 14 13 17 17 C 1.47260 * 119.99867 * 180.02562 * 15 14 13 18 18 C 1.35209 * 123.14149 * 179.97438 * 17 15 14 19 19 S 1.70940 * 108.83090 * 180.02562 * 18 17 15 20 20 C 1.70770 * 91.12831 * 0.02562 * 19 18 17 21 21 C 1.50703 * 124.72213 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.49464 * 8.70248 * 21 20 19 23 23 C 1.53004 * 117.49464 * 300.04518 * 21 20 19 24 24 N 1.28652 * 110.55803 * 359.97438 * 20 19 18 25 25 C 1.47171 * 87.99667 * 333.59194 * 14 13 12 26 26 C 1.52551 * 113.43041 * 302.66732 * 12 11 10 27 27 C 1.46881 * 120.46251 * 329.73117 * 9 7 2 28 28 H 0.97002 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.59276 * 4.61726 * 10 9 7 30 30 H 1.09000 * 109.59414 * 244.16720 * 10 9 7 31 31 H 1.08999 * 109.53113 * 292.36938 * 11 10 9 32 32 H 1.08996 * 109.58975 * 172.19435 * 11 10 9 33 33 H 1.09000 * 113.49065 * 24.69736 * 13 12 11 34 34 H 1.09003 * 113.54929 * 254.19933 * 13 12 11 35 35 H 1.08001 * 125.58513 * 0.05688 * 18 17 15 36 36 H 1.08991 * 115.55273 * 154.37220 * 21 20 19 37 37 H 1.08993 * 117.50136 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49504 * 145.02948 * 22 21 20 39 39 H 1.08995 * 117.49425 * 214.97794 * 23 21 20 40 40 H 1.08998 * 117.49795 * 359.97437 * 23 21 20 41 41 H 1.09005 * 113.48360 * 141.15783 * 25 14 13 42 42 H 1.08999 * 113.48776 * 271.66143 * 25 14 13 43 43 H 1.08994 * 109.52680 * 177.21237 * 26 12 11 44 44 H 1.08993 * 109.53355 * 297.42476 * 26 12 11 45 45 H 1.09004 * 109.59370 * 355.38073 * 27 9 7 46 46 H 1.09001 * 109.59537 * 115.82165 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5470 2.0179 -1.3989 5 1 1.4238 2.6664 0.6501 6 1 3.5222 1.4550 0.7488 7 6 2.0102 -1.2021 0.0005 8 1 1.5292 -2.1033 0.3511 9 7 3.3049 -1.2454 -0.4436 10 6 4.2506 -2.2224 0.1123 11 6 4.8404 -3.0470 -1.0384 12 6 5.3935 -2.1006 -2.0994 13 6 6.7231 -1.4467 -1.7196 14 7 7.1578 -1.6518 -3.1105 15 6 8.0260 -1.0571 -3.9527 16 8 8.6721 -0.0959 -3.5811 17 6 8.1914 -1.5705 -5.3229 18 6 9.0427 -1.0232 -6.2196 19 16 8.9416 -1.9006 -7.6831 20 6 7.7688 -2.9463 -7.0144 21 6 7.1231 -4.0933 -7.7484 22 6 7.6920 -4.4644 -9.1194 23 6 6.3341 -3.7650 -9.0176 24 7 7.5139 -2.6195 -5.7965 25 6 6.2239 -2.7871 -3.1805 26 6 4.3540 -1.1260 -2.6442 27 6 3.7675 -0.3153 -1.4819 28 1 -0.4851 0.8400 0.0004 29 1 3.7290 -2.8827 0.8052 30 1 5.0514 -1.6994 0.6350 31 1 4.0610 -3.6703 -1.4768 32 1 5.6433 -3.6798 -0.6604 33 1 7.2991 -2.0224 -0.9951 34 1 6.6289 -0.3963 -1.4442 35 1 9.6823 -0.1716 -6.0403 36 1 6.7526 -4.9039 -7.1211 37 1 8.5335 -3.8793 -9.4902 38 1 7.6953 -5.5192 -9.3941 39 1 5.4449 -4.3601 -9.2253 40 1 6.2818 -2.7195 -9.3214 41 1 5.7079 -2.8666 -4.1374 42 1 6.6628 -3.7311 -2.8575 43 1 4.8264 -0.4507 -3.3575 44 1 3.5577 -1.6816 -3.1392 45 1 2.9277 0.2807 -1.8393 46 1 4.5346 0.3404 -1.0699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050769932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:28 Heat of formation + Delta-G solvation = 83.043303 kcal Electronic energy + Delta-G solvation = -28334.607669 eV Core-core repulsion = 24546.281693 eV Total energy + Delta-G solvation = -3788.325976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24076 -41.02603 -39.41401 -37.97801 -37.76022 -34.39613 -32.50806 -32.03510 -31.61088 -29.21549 -27.63809 -26.58141 -25.80574 -24.47519 -24.16141 -23.31706 -22.62193 -21.59381 -20.42800 -19.74128 -19.18157 -18.36569 -17.63488 -17.32968 -17.28284 -16.89735 -16.74574 -16.04159 -15.86749 -15.44366 -15.28450 -15.15505 -14.95922 -14.80190 -14.56104 -14.29843 -13.97990 -13.64430 -13.38094 -13.29710 -13.26685 -13.13089 -12.87442 -12.56624 -12.40186 -12.25514 -12.13677 -11.90223 -11.71178 -11.68361 -11.46726 -11.41692 -11.27884 -11.05853 -10.79577 -10.62332 -10.61653 -10.00634 -9.67476 -8.86888 -8.18762 -5.49027 -0.60888 0.15067 0.49473 0.78924 1.27211 1.37590 1.46008 1.76314 2.15730 2.40015 2.66373 2.97977 3.03435 3.21940 3.37104 3.48235 3.74135 3.80562 3.87771 3.98240 4.02376 4.08550 4.10973 4.29573 4.33733 4.41850 4.44719 4.53702 4.57723 4.64393 4.68861 4.76320 4.78180 4.85975 4.92076 4.99052 5.00713 5.03393 5.09960 5.15973 5.20685 5.20787 5.29336 5.52659 5.90732 6.15117 6.35253 6.55168 6.93184 6.94424 7.63767 8.06360 9.01397 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.002756 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.311725 B =10155.658651 C =10616.691381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.027 4.027 3 Si 0.932 3.068 4 H -0.279 1.279 5 H -0.309 1.309 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.141 3.859 11 C -0.101 4.101 12 C -0.081 4.081 13 C 0.111 3.889 14 N -0.628 5.628 15 C 0.608 3.392 16 O -0.582 6.582 17 C -0.004 4.004 18 C -0.246 4.246 19 S 0.292 5.708 20 C 0.046 3.954 21 C -0.107 4.107 22 C -0.150 4.150 23 C -0.158 4.158 24 N -0.459 5.459 25 C 0.134 3.866 26 C -0.094 4.094 27 C 0.129 3.871 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.192 0.808 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.094 -12.034 -21.175 32.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.222 4.222 3 Si 0.762 3.238 4 H -0.206 1.206 5 H -0.237 1.237 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.076 0.924 9 N -0.341 5.341 10 C 0.016 3.984 11 C -0.141 4.141 12 C -0.082 4.082 13 C -0.011 4.011 14 N -0.359 5.359 15 C 0.397 3.603 16 O -0.464 6.464 17 C -0.139 4.139 18 C -0.389 4.389 19 S 0.551 5.449 20 C -0.233 4.233 21 C -0.129 4.129 22 C -0.188 4.188 23 C -0.197 4.197 24 N -0.174 5.174 25 C 0.013 3.987 26 C -0.133 4.133 27 C 0.004 3.996 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.209 0.791 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 21.562 -11.576 -21.723 32.723 hybrid contribution -0.317 1.910 1.533 2.470 sum 21.244 -9.666 -20.190 30.861 Atomic orbital electron populations 1.69964 1.07208 1.27071 1.55574 1.25853 0.95645 1.00347 1.00360 0.86134 0.78634 0.81394 0.77650 1.20590 1.23721 1.19379 1.18884 0.87512 0.93499 1.37383 0.92407 1.44469 1.08255 1.39811 1.41606 1.21182 0.91630 0.90904 0.94670 1.21737 1.00927 0.96532 0.94864 1.21560 0.92744 0.96789 0.97065 1.23254 0.92936 1.01591 0.83365 1.49435 1.39426 1.32955 1.14117 1.16970 0.77872 0.81965 0.83519 1.90772 1.48456 1.29293 1.77852 1.20088 1.00456 0.97070 0.96324 1.26895 1.05175 1.07615 0.99174 1.82332 1.33923 1.18956 1.09714 1.26786 1.00723 1.02317 0.93443 1.20544 1.05967 0.95816 0.90534 1.23310 0.97131 1.03770 0.94616 1.23281 0.96871 1.02684 0.96874 1.66871 1.24215 1.13672 1.12652 1.23078 0.86456 0.89725 0.99486 1.21490 0.97351 0.97518 0.96918 1.21262 0.96507 0.92364 0.89491 0.93006 0.91846 0.94762 0.91322 0.88069 0.86955 0.92446 0.79105 0.84697 0.87678 0.85235 0.86156 0.88440 0.89722 0.87235 0.93005 0.91514 0.93563 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.97 21.65 0.30 -59.89 16 2 C -0.03 -1.58 5.17 84.86 0.44 -1.14 16 3 Si 0.93 48.06 24.57 68.60 1.69 49.75 16 4 H -0.28 -13.87 6.44 99.48 0.64 -13.23 16 5 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 6 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.24 -13.67 9.97 84.03 0.84 -12.83 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 N -0.62 -28.62 2.68 -698.64 -1.87 -30.50 16 10 C 0.14 5.03 6.42 86.42 0.56 5.59 16 11 C -0.10 -2.74 5.31 30.57 0.16 -2.58 16 12 C -0.08 -2.30 0.83 -52.61 -0.04 -2.34 16 13 C 0.11 3.18 7.56 83.32 0.63 3.81 16 14 N -0.63 -18.74 3.46 -862.76 -2.99 -21.72 16 15 C 0.61 20.16 8.05 86.61 0.70 20.85 16 16 O -0.58 -22.84 17.49 -4.12 -0.07 -22.92 16 17 C 0.00 -0.12 6.69 40.56 0.27 0.15 16 18 C -0.25 -5.25 10.62 67.12 0.71 -4.54 16 19 S 0.29 3.85 21.65 -56.49 -1.22 2.63 16 20 C 0.05 0.80 6.99 88.58 0.62 1.42 16 21 C -0.11 -1.24 6.33 -11.54 -0.07 -1.31 16 22 C -0.15 -0.85 10.01 30.62 0.31 -0.54 16 23 C -0.16 -1.29 10.24 30.62 0.31 -0.98 16 24 N -0.46 -11.02 8.76 -180.84 -1.58 -12.61 16 25 C 0.13 3.31 6.76 83.21 0.56 3.87 16 26 C -0.09 -3.34 5.26 30.57 0.16 -3.18 16 27 C 0.13 5.67 4.14 86.43 0.36 6.03 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.06 2.28 7.92 -2.38 -0.02 2.27 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 33 H 0.11 2.63 8.06 -2.39 -0.02 2.61 16 34 H 0.06 1.91 7.53 -2.39 -0.02 1.89 16 35 H 0.19 3.81 8.03 -2.91 -0.02 3.79 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.10 0.44 7.21 -2.39 -0.02 0.42 16 38 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 2.18 7.29 -2.38 -0.02 2.17 16 42 H 0.11 2.15 8.09 -2.39 -0.02 2.13 16 43 H 0.05 1.85 7.95 -2.39 -0.02 1.83 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.05 2.29 4.66 -2.38 -0.01 2.27 16 46 H 0.02 0.94 6.93 -2.39 -0.02 0.93 16 Total: -1.00 -76.49 378.71 1.68 -74.81 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.92 Total: 8.18 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.51 Total: 12.27 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.14 Total: -124.72 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.07 Total: -22.92 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.69 Total: 49.75 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.22 Total: 2.63 kcal Total: -76.49 1.68 -74.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050769932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.855 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds