Wall clock time and date at job start Wed Apr 1 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99789 * 2 1 4 4 H 1.48496 * 109.47361 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.46906 * 120.00063 * 3 2 1 6 6 H 1.48505 * 109.46833 * 239.99611 * 3 2 1 7 7 C 1.38809 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99680 * 157.94875 * 7 2 1 9 9 N 1.36940 * 119.99900 * 337.95328 * 7 2 1 10 10 C 1.47150 * 120.97878 * 329.19700 * 9 7 2 11 11 C 1.53296 * 108.38506 * 230.51417 * 10 9 7 12 12 O 1.42969 * 109.22309 * 307.70518 * 11 10 9 13 13 C 1.42958 * 114.16623 * 62.57790 * 12 11 10 14 14 C 1.47146 * 120.98013 * 148.92308 * 9 7 2 15 15 H 1.09000 * 109.68143 * 249.20794 * 14 9 7 16 16 C 1.50703 * 109.68645 * 9.75771 * 14 9 7 17 17 N 1.30713 * 125.52104 * 44.69700 * 16 14 9 18 18 N 1.40448 * 106.78969 * 179.86091 * 17 16 14 19 19 H 0.97003 * 126.82014 * 180.16178 * 18 17 16 20 20 C 1.34422 * 106.35439 * 0.39640 * 18 17 16 21 21 C 1.50697 * 125.96218 * 179.77747 * 20 18 17 22 22 N 1.46506 * 109.47138 * 94.97796 * 21 20 18 23 23 C 1.34769 * 120.00168 * 179.97438 * 22 21 20 24 24 O 1.21605 * 120.00302 * 0.02562 * 23 22 21 25 25 C 1.47433 * 120.00237 * 179.97438 * 23 22 21 26 26 C 1.41294 * 126.41136 * 0.02562 * 25 23 22 27 27 N 1.30451 * 108.02167 * 179.97438 * 26 25 23 28 28 N 1.39933 * 108.89304 * 0.02562 * 27 26 25 29 29 H 0.97003 * 125.74590 * 180.02562 * 28 27 26 30 30 C 1.34255 * 108.49826 * 359.74792 * 28 27 26 31 31 N 1.30832 * 108.07748 * 359.75912 * 20 18 17 32 32 H 0.96998 * 120.00344 * 174.43496 * 1 2 3 33 33 H 1.08988 * 109.68563 * 350.24480 * 10 9 7 34 34 H 1.09000 * 109.67592 * 110.79663 * 10 9 7 35 35 H 1.08999 * 109.51295 * 67.62352 * 11 10 9 36 36 H 1.08998 * 109.51306 * 187.77705 * 11 10 9 37 37 H 1.08992 * 109.51322 * 57.34766 * 13 12 11 38 38 H 1.09005 * 109.51115 * 177.44399 * 13 12 11 39 39 H 1.09002 * 109.47151 * 214.97492 * 21 20 18 40 40 H 1.09001 * 109.47048 * 334.97936 * 21 20 18 41 41 H 0.96999 * 119.99571 * 359.97438 * 22 21 20 42 42 H 1.08002 * 125.98647 * 359.97438 * 26 25 23 43 43 H 1.07999 * 126.29311 * 180.24624 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0309 -1.2364 -0.3506 9 7 1.4006 -2.3445 0.4462 10 6 0.3693 -2.2931 1.4946 11 6 0.7325 -3.3123 2.5805 12 8 0.9578 -4.5869 1.9734 13 6 2.0529 -4.6121 1.0547 14 6 1.7532 -3.6589 -0.1133 15 1 0.9192 -4.0438 -0.7002 16 6 2.9728 -3.5274 -0.9889 17 7 4.0526 -2.8539 -0.6908 18 7 4.9330 -2.9979 -1.7756 19 1 5.8215 -2.6173 -1.8577 20 6 4.2977 -3.7634 -2.6796 21 6 4.8436 -4.1900 -4.0179 22 7 5.4552 -5.5156 -3.8958 23 6 6.0122 -6.1027 -4.9734 24 8 6.0076 -5.5318 -6.0472 25 6 6.6282 -7.4365 -4.8504 26 6 6.7098 -8.2175 -3.6758 27 7 7.3238 -9.3296 -3.9725 28 7 7.6599 -9.3132 -5.3307 29 1 8.1227 -10.0193 -5.8086 30 6 7.2286 -8.1583 -5.8624 31 7 3.1229 -4.0739 -2.1947 32 1 -0.4850 -0.8360 -0.0815 33 1 0.3344 -1.2930 1.9266 34 1 -0.6017 -2.5428 1.0668 35 1 1.6374 -2.9891 3.0951 36 1 -0.0862 -3.3894 3.2959 37 1 2.9625 -4.2938 1.5637 38 1 2.1847 -5.6247 0.6731 39 1 4.0326 -4.2296 -4.7452 40 1 5.5943 -3.4726 -4.3494 41 1 5.4592 -5.9708 -3.0392 42 1 6.3303 -7.9421 -2.7029 43 1 7.3340 -7.8498 -6.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070580130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:11 Heat of formation + Delta-G solvation = 122.578580 kcal Electronic energy + Delta-G solvation = -29949.360832 eV Core-core repulsion = 25648.748771 eV Total energy + Delta-G solvation = -4300.612061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96080 -41.74467 -39.37296 -38.46869 -35.36010 -34.78048 -32.97466 -32.36398 -31.63555 -30.97718 -30.52299 -29.85038 -27.09591 -26.76191 -24.00786 -23.28820 -23.15678 -22.42618 -21.43490 -20.51822 -20.34668 -19.39014 -19.13323 -17.93725 -17.17477 -16.48673 -16.38303 -15.77555 -15.70514 -15.25673 -15.04954 -14.87780 -14.78105 -14.50291 -14.26245 -13.85885 -13.80708 -13.52446 -13.50623 -13.27773 -13.06627 -12.58653 -12.04898 -11.73441 -11.65616 -11.51425 -10.85068 -10.72042 -10.55891 -10.34765 -10.27834 -10.15539 -10.02829 -9.78583 -9.68109 -9.52048 -9.48657 -9.44345 -9.19583 -8.74604 -8.36785 -6.90344 -6.00925 -3.27955 1.09916 1.68523 1.73097 2.23277 2.74920 2.97757 3.14449 3.35919 3.46983 3.50134 3.68759 3.96284 4.18357 4.36324 4.37994 4.55282 4.66668 4.79069 4.88025 4.97002 5.12609 5.23425 5.42643 5.46278 5.52015 5.67804 5.73262 5.85234 5.92863 6.03239 6.04765 6.13507 6.34186 6.45722 6.56832 6.58350 6.74722 6.78697 6.97134 7.02622 7.18992 7.25973 7.71444 7.95883 8.08958 8.41178 8.61792 9.04017 9.82129 10.21411 11.23657 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.002564 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.035406 B =10918.785540 C =12297.952475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.350 4.350 8 H 0.081 0.919 9 N -0.593 5.593 10 C 0.125 3.875 11 C 0.040 3.960 12 O -0.387 6.387 13 C 0.062 3.938 14 C 0.226 3.774 15 H 0.063 0.937 16 C 0.254 3.746 17 N -0.254 5.254 18 N -0.482 5.482 19 H 0.436 0.564 20 C 0.241 3.759 21 C 0.210 3.790 22 N -0.720 5.720 23 C 0.600 3.400 24 O -0.547 6.547 25 C -0.293 4.293 26 C 0.087 3.913 27 N -0.294 5.294 28 N -0.464 5.464 29 H 0.445 0.555 30 C 0.137 3.863 31 N -0.514 5.514 32 H 0.269 0.731 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.404 0.596 42 H 0.191 0.809 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.238 -16.006 -7.811 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.226 4.226 3 Si 0.896 3.104 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.479 4.479 8 H 0.098 0.902 9 N -0.319 5.319 10 C 0.000 4.000 11 C -0.038 4.038 12 O -0.305 6.305 13 C -0.017 4.017 14 C 0.117 3.883 15 H 0.081 0.919 16 C -0.028 4.028 17 N -0.082 5.082 18 N -0.201 5.201 19 H 0.280 0.720 20 C -0.038 4.038 21 C 0.084 3.916 22 N -0.373 5.373 23 C 0.388 3.612 24 O -0.425 6.425 25 C -0.308 4.308 26 C -0.102 4.102 27 N -0.115 5.115 28 N -0.169 5.169 29 H 0.290 0.710 30 C -0.016 4.016 31 N -0.243 5.243 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.239 0.761 42 H 0.208 0.792 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 15.150 -14.987 -7.486 22.587 hybrid contribution 0.870 -0.794 -0.603 1.323 sum 16.020 -15.781 -8.089 23.898 Atomic orbital electron populations 1.70771 1.06518 1.30384 1.48244 1.25896 0.96631 1.01416 0.98617 0.83504 0.74694 0.76104 0.76056 1.21102 1.21991 1.22337 1.20460 0.96766 0.86742 1.43968 0.90180 1.44072 1.46468 1.01058 1.40349 1.21621 0.91123 0.98774 0.88524 1.23224 1.00216 0.84545 0.95792 1.87826 1.51680 1.31956 1.59082 1.22949 0.89453 0.98932 0.90412 1.19550 0.88913 0.89593 0.90279 0.91931 1.23925 0.95005 0.92655 0.91263 1.78413 1.02290 1.20818 1.06637 1.48281 1.17176 1.40458 1.14215 0.71955 1.23870 0.90411 0.94935 0.94616 1.19506 0.98491 0.84264 0.89311 1.45656 1.59687 1.19174 1.12772 1.17132 0.76981 0.83775 0.83308 1.90806 1.59462 1.65170 1.27050 1.20232 1.16780 0.99359 0.94472 1.24154 0.96063 0.90733 0.99226 1.77212 1.20266 1.22032 0.91979 1.46274 1.46002 1.16426 1.08179 0.70969 1.23078 0.92992 0.85846 0.99729 1.70278 1.16098 1.27551 1.10377 0.91986 0.89495 0.95188 0.93491 0.89692 0.93123 0.89616 0.87581 0.89032 0.76141 0.79207 0.78972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 12.57 55.49 0.70 -26.74 16 2 C -0.02 -0.66 4.77 -17.43 -0.08 -0.75 16 3 Si 1.07 25.64 29.97 -169.99 -5.10 20.54 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.35 -9.61 8.67 -15.06 -0.13 -9.74 16 8 H 0.08 2.21 4.99 -52.49 -0.26 1.95 16 9 N -0.59 -14.76 2.86 -165.37 -0.47 -15.23 16 10 C 0.13 2.89 4.87 -3.53 -0.02 2.88 16 11 C 0.04 0.77 6.99 37.31 0.26 1.04 16 12 O -0.39 -7.59 10.74 -35.23 -0.38 -7.97 16 13 C 0.06 1.17 6.29 37.53 0.24 1.41 16 14 C 0.23 4.91 3.64 -68.36 -0.25 4.66 16 15 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.25 5.21 6.13 -156.86 -0.96 4.25 16 17 N -0.25 -5.03 10.05 32.42 0.33 -4.70 16 18 N -0.48 -7.02 7.45 32.62 0.24 -6.77 16 19 H 0.44 4.63 8.96 -182.33 -1.63 2.99 16 20 C 0.24 3.44 7.60 -155.70 -1.18 2.26 16 21 C 0.21 2.27 6.30 -5.19 -0.03 2.23 16 22 N -0.72 -6.69 5.54 -62.56 -0.35 -7.04 16 23 C 0.60 6.21 7.81 -12.52 -0.10 6.11 16 24 O -0.55 -7.33 16.90 5.27 0.09 -7.25 16 25 C -0.29 -2.45 6.13 -105.06 -0.64 -3.10 16 26 C 0.09 0.67 11.50 -16.98 -0.20 0.47 16 27 N -0.29 -2.47 12.63 30.86 0.39 -2.08 16 28 N -0.46 -2.57 7.29 30.85 0.22 -2.35 16 29 H 0.45 0.91 8.96 -182.72 -1.64 -0.73 16 30 C 0.14 0.85 11.82 -16.56 -0.20 0.65 16 31 N -0.51 -9.37 11.19 -8.16 -0.09 -9.46 16 32 H 0.27 8.10 6.51 -40.82 -0.27 7.83 16 33 H 0.09 2.19 6.67 -51.94 -0.35 1.85 16 34 H 0.03 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.40 3.18 7.42 -40.82 -0.30 2.88 16 42 H 0.19 0.99 7.50 -52.49 -0.39 0.60 16 43 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -37.77 364.78 -9.63 -47.40 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.42 Total: 3.76 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -3.29 Total: 12.38 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: 0.97 Total: -74.37 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.29 Total: -15.21 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.77 -9.63 -47.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070580130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.980 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds