Wall clock time and date at job start Wed Apr 1 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99789 * 2 1 4 4 H 1.48496 * 109.47361 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.46906 * 120.00063 * 3 2 1 6 6 H 1.48505 * 109.46833 * 239.99611 * 3 2 1 7 7 C 1.38809 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99680 * 157.94875 * 7 2 1 9 9 N 1.36940 * 119.99900 * 337.95328 * 7 2 1 10 10 C 1.47150 * 120.97878 * 329.19700 * 9 7 2 11 11 C 1.53296 * 108.38506 * 230.51417 * 10 9 7 12 12 O 1.42969 * 109.22309 * 307.70518 * 11 10 9 13 13 C 1.42958 * 114.16623 * 62.57790 * 12 11 10 14 14 C 1.47146 * 120.98013 * 148.92308 * 9 7 2 15 15 H 1.09000 * 109.68143 * 249.20794 * 14 9 7 16 16 C 1.50703 * 109.68645 * 9.75771 * 14 9 7 17 17 N 1.30713 * 125.52104 * 44.69700 * 16 14 9 18 18 N 1.40448 * 106.78969 * 179.86091 * 17 16 14 19 19 H 0.97003 * 126.82014 * 180.16178 * 18 17 16 20 20 C 1.34422 * 106.35439 * 0.39640 * 18 17 16 21 21 C 1.50697 * 125.96218 * 179.77747 * 20 18 17 22 22 N 1.46506 * 109.47138 * 94.97796 * 21 20 18 23 23 C 1.34769 * 120.00168 * 179.97438 * 22 21 20 24 24 O 1.21605 * 120.00302 * 0.02562 * 23 22 21 25 25 C 1.47433 * 120.00237 * 179.97438 * 23 22 21 26 26 C 1.41294 * 126.41136 * 0.02562 * 25 23 22 27 27 N 1.30451 * 108.02167 * 179.97438 * 26 25 23 28 28 N 1.39933 * 108.89304 * 0.02562 * 27 26 25 29 29 H 0.97003 * 125.74590 * 180.02562 * 28 27 26 30 30 C 1.34255 * 108.49826 * 359.74792 * 28 27 26 31 31 N 1.30832 * 108.07748 * 359.75912 * 20 18 17 32 32 H 0.96998 * 120.00344 * 174.43496 * 1 2 3 33 33 H 1.08988 * 109.68563 * 350.24480 * 10 9 7 34 34 H 1.09000 * 109.67592 * 110.79663 * 10 9 7 35 35 H 1.08999 * 109.51295 * 67.62352 * 11 10 9 36 36 H 1.08998 * 109.51306 * 187.77705 * 11 10 9 37 37 H 1.08992 * 109.51322 * 57.34766 * 13 12 11 38 38 H 1.09005 * 109.51115 * 177.44399 * 13 12 11 39 39 H 1.09002 * 109.47151 * 214.97492 * 21 20 18 40 40 H 1.09001 * 109.47048 * 334.97936 * 21 20 18 41 41 H 0.96999 * 119.99571 * 359.97438 * 22 21 20 42 42 H 1.08002 * 125.98647 * 359.97438 * 26 25 23 43 43 H 1.07999 * 126.29311 * 180.24624 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0309 -1.2364 -0.3506 9 7 1.4006 -2.3445 0.4462 10 6 0.3693 -2.2931 1.4946 11 6 0.7325 -3.3123 2.5805 12 8 0.9578 -4.5869 1.9734 13 6 2.0529 -4.6121 1.0547 14 6 1.7532 -3.6589 -0.1133 15 1 0.9192 -4.0438 -0.7002 16 6 2.9728 -3.5274 -0.9889 17 7 4.0526 -2.8539 -0.6908 18 7 4.9330 -2.9979 -1.7756 19 1 5.8215 -2.6173 -1.8577 20 6 4.2977 -3.7634 -2.6796 21 6 4.8436 -4.1900 -4.0179 22 7 5.4552 -5.5156 -3.8958 23 6 6.0122 -6.1027 -4.9734 24 8 6.0076 -5.5318 -6.0472 25 6 6.6282 -7.4365 -4.8504 26 6 6.7098 -8.2175 -3.6758 27 7 7.3238 -9.3296 -3.9725 28 7 7.6599 -9.3132 -5.3307 29 1 8.1227 -10.0193 -5.8086 30 6 7.2286 -8.1583 -5.8624 31 7 3.1229 -4.0739 -2.1947 32 1 -0.4850 -0.8360 -0.0815 33 1 0.3344 -1.2930 1.9266 34 1 -0.6017 -2.5428 1.0668 35 1 1.6374 -2.9891 3.0951 36 1 -0.0862 -3.3894 3.2959 37 1 2.9625 -4.2938 1.5637 38 1 2.1847 -5.6247 0.6731 39 1 4.0326 -4.2296 -4.7452 40 1 5.5943 -3.4726 -4.3494 41 1 5.4592 -5.9708 -3.0392 42 1 6.3303 -7.9421 -2.7029 43 1 7.3340 -7.8498 -6.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070580130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:10 Heat of formation + Delta-G solvation = 91.712473 kcal Electronic energy + Delta-G solvation = -29950.699287 eV Core-core repulsion = 25648.748771 eV Total energy + Delta-G solvation = -4301.950516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.30033 -42.31292 -40.25337 -40.05486 -36.77863 -36.11553 -34.48742 -33.20256 -32.87745 -32.40020 -31.68133 -31.04631 -28.65574 -28.08895 -25.60175 -25.11819 -23.97997 -23.00003 -22.78752 -21.82383 -21.16017 -21.06561 -19.85359 -19.38567 -18.77224 -17.53423 -17.32307 -17.09634 -16.92682 -16.44735 -16.29638 -16.00083 -15.73790 -15.61623 -15.54124 -15.45831 -15.37351 -15.00973 -14.54727 -14.42744 -14.07605 -13.80208 -13.67561 -13.36891 -12.95382 -12.62871 -12.55958 -12.24778 -12.19861 -11.99279 -11.85372 -11.35808 -11.19791 -11.14078 -11.09109 -10.96154 -10.86608 -10.52405 -10.32904 -10.25143 -9.80045 -8.92615 -8.15424 -5.41889 0.44269 0.55440 1.13386 1.51247 1.53580 1.60447 1.66405 1.79484 1.84339 2.36289 2.43471 2.61203 2.72187 2.92952 3.24461 3.38012 3.58645 3.65121 3.77217 3.91974 4.03708 4.09873 4.14765 4.29854 4.38628 4.41470 4.44922 4.52513 4.52745 4.72787 4.74314 4.86510 4.98071 5.16932 5.18489 5.21557 5.25958 5.34601 5.99934 6.13632 6.17624 6.22656 6.39539 6.44712 6.55101 6.94720 7.08377 7.18745 7.75096 8.16641 9.04996 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.002564 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.035406 B =10918.785540 C =12297.952475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.080 4.080 3 Si 1.112 2.888 4 H -0.293 1.293 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.343 4.343 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.128 3.872 11 C 0.053 3.947 12 O -0.389 6.389 13 C 0.073 3.927 14 C 0.220 3.780 15 H 0.044 0.956 16 C 0.238 3.762 17 N -0.286 5.286 18 N -0.464 5.464 19 H 0.455 0.545 20 C 0.266 3.734 21 C 0.217 3.783 22 N -0.712 5.712 23 C 0.605 3.395 24 O -0.581 6.581 25 C -0.319 4.319 26 C 0.088 3.912 27 N -0.324 5.324 28 N -0.451 5.451 29 H 0.460 0.540 30 C 0.151 3.849 31 N -0.542 5.542 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.412 0.588 42 H 0.208 0.792 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.592 -17.244 -8.268 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.276 4.276 3 Si 0.937 3.063 4 H -0.219 1.219 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.473 4.473 8 H 0.099 0.901 9 N -0.336 5.336 10 C 0.003 3.997 11 C -0.025 4.025 12 O -0.307 6.307 13 C -0.007 4.007 14 C 0.112 3.888 15 H 0.061 0.939 16 C -0.044 4.044 17 N -0.115 5.115 18 N -0.185 5.185 19 H 0.303 0.697 20 C -0.013 4.013 21 C 0.090 3.910 22 N -0.365 5.365 23 C 0.394 3.606 24 O -0.462 6.462 25 C -0.334 4.334 26 C -0.100 4.100 27 N -0.145 5.145 28 N -0.157 5.157 29 H 0.308 0.692 30 C -0.003 4.003 31 N -0.272 5.272 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.248 0.752 42 H 0.224 0.776 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 17.563 -16.286 -7.922 25.228 hybrid contribution 0.227 -0.540 -0.592 0.832 sum 17.790 -16.826 -8.514 25.924 Atomic orbital electron populations 1.70886 1.07471 1.29348 1.51487 1.27134 0.96759 1.04643 0.99029 0.82883 0.73797 0.72576 0.76996 1.21939 1.20411 1.21013 1.20726 0.96894 0.87591 1.42094 0.90084 1.44300 1.46411 1.01773 1.41121 1.21530 0.90260 0.98662 0.89294 1.23132 1.01480 0.83255 0.94619 1.87831 1.52024 1.31700 1.59108 1.22941 0.88992 0.99671 0.89056 1.19627 0.89188 0.88521 0.91483 0.93873 1.23669 0.94915 0.93818 0.92040 1.78233 1.02897 1.21527 1.08840 1.48100 1.17471 1.40016 1.12944 0.69679 1.24338 0.89069 0.93025 0.94888 1.19564 0.98970 0.85621 0.86800 1.45514 1.59217 1.18581 1.13161 1.17337 0.76402 0.84158 0.82696 1.90789 1.61010 1.66149 1.28229 1.20192 1.18598 0.98988 0.95639 1.24446 0.95462 0.90271 0.99836 1.77171 1.21257 1.22640 0.93445 1.46299 1.45278 1.16669 1.07451 0.69184 1.23476 0.91184 0.85309 1.00361 1.70249 1.18143 1.28800 1.09980 0.93696 0.92132 0.96871 0.93168 0.86479 0.93156 0.86663 0.88237 0.86672 0.75172 0.77581 0.76567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 12.57 21.65 0.27 -58.21 16 2 C -0.08 -4.58 4.77 84.86 0.40 -4.18 16 3 Si 1.11 52.14 29.97 68.60 2.06 54.19 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.34 -19.04 8.67 84.03 0.73 -18.31 16 8 H 0.08 4.47 4.99 -2.91 -0.01 4.45 16 9 N -0.61 -30.85 2.86 -677.11 -1.94 -32.78 16 10 C 0.13 6.07 4.87 86.35 0.42 6.49 16 11 C 0.05 1.99 6.99 72.08 0.50 2.49 16 12 O -0.39 -14.68 10.74 -148.98 -1.60 -16.28 16 13 C 0.07 2.64 6.29 72.22 0.45 3.10 16 14 C 0.22 9.64 3.64 44.36 0.16 9.80 16 15 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.24 9.69 6.13 138.63 0.85 10.54 16 17 N -0.29 -11.05 10.05 -51.33 -0.52 -11.56 16 18 N -0.46 -12.64 7.45 -50.71 -0.38 -13.01 16 19 H 0.45 8.50 8.96 -213.09 -1.91 6.59 16 20 C 0.27 7.15 7.60 138.23 1.05 8.20 16 21 C 0.22 4.23 6.30 85.63 0.54 4.77 16 22 N -0.71 -11.82 5.54 -470.10 -2.60 -14.43 16 23 C 0.60 11.45 7.81 86.67 0.68 12.13 16 24 O -0.58 -14.71 16.90 -4.05 -0.07 -14.78 16 25 C -0.32 -4.73 6.13 -20.15 -0.12 -4.86 16 26 C 0.09 1.19 11.50 85.65 0.99 2.18 16 27 N -0.32 -4.87 12.63 -56.27 -0.71 -5.58 16 28 N -0.45 -4.01 7.29 -56.32 -0.41 -4.42 16 29 H 0.46 0.84 8.96 -213.42 -1.91 -1.08 16 30 C 0.15 1.53 11.82 84.28 1.00 2.53 16 31 N -0.54 -19.37 11.19 -179.73 -2.01 -21.38 16 32 H 0.25 15.95 6.51 -92.71 -0.60 15.34 16 33 H 0.06 3.17 6.67 -2.39 -0.02 3.15 16 34 H 0.01 0.66 7.69 -2.39 -0.02 0.64 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.12 3.49 8.14 -2.38 -0.02 3.47 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.41 5.63 7.42 -92.71 -0.69 4.94 16 42 H 0.21 1.76 7.50 -2.91 -0.02 1.74 16 43 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -83.08 364.78 -3.48 -86.56 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -3.22 Total: 16.79 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 7.65 Total: 34.89 kcal Atomic # 7 Polarization: -153.08 SS G_CDS: -8.29 Total: -161.38 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.67 Total: -31.05 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.06 Total: 54.19 kcal Total: -83.08 -3.48 -86.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070580130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.277 kcal (2) G-P(sol) polarization free energy of solvation -83.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds