Wall clock time and date at job start Wed Apr 1 2020 05:11:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86805 * 119.99789 * 2 1
4 4 H 1.48496 * 109.47361 * 359.97438 * 3 2 1
5 5 H 1.48506 * 109.46906 * 120.00063 * 3 2 1
6 6 H 1.48505 * 109.46833 * 239.99611 * 3 2 1
7 7 C 1.38809 * 119.99927 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99680 * 157.94875 * 7 2 1
9 9 N 1.36940 * 119.99900 * 337.95328 * 7 2 1
10 10 C 1.47150 * 120.97878 * 329.19700 * 9 7 2
11 11 C 1.53296 * 108.38506 * 230.51417 * 10 9 7
12 12 O 1.42969 * 109.22309 * 307.70518 * 11 10 9
13 13 C 1.42958 * 114.16623 * 62.57790 * 12 11 10
14 14 C 1.47146 * 120.98013 * 148.92308 * 9 7 2
15 15 H 1.09000 * 109.68143 * 249.20794 * 14 9 7
16 16 C 1.50703 * 109.68645 * 9.75771 * 14 9 7
17 17 N 1.30713 * 125.52104 * 44.69700 * 16 14 9
18 18 N 1.40448 * 106.78969 * 179.86091 * 17 16 14
19 19 H 0.97003 * 126.82014 * 180.16178 * 18 17 16
20 20 C 1.34422 * 106.35439 * 0.39640 * 18 17 16
21 21 C 1.50697 * 125.96218 * 179.77747 * 20 18 17
22 22 N 1.46506 * 109.47138 * 94.97796 * 21 20 18
23 23 C 1.34769 * 120.00168 * 179.97438 * 22 21 20
24 24 O 1.21605 * 120.00302 * 0.02562 * 23 22 21
25 25 C 1.47433 * 120.00237 * 179.97438 * 23 22 21
26 26 C 1.41294 * 126.41136 * 0.02562 * 25 23 22
27 27 N 1.30451 * 108.02167 * 179.97438 * 26 25 23
28 28 N 1.39933 * 108.89304 * 0.02562 * 27 26 25
29 29 H 0.97003 * 125.74590 * 180.02562 * 28 27 26
30 30 C 1.34255 * 108.49826 * 359.74792 * 28 27 26
31 31 N 1.30832 * 108.07748 * 359.75912 * 20 18 17
32 32 H 0.96998 * 120.00344 * 174.43496 * 1 2 3
33 33 H 1.08988 * 109.68563 * 350.24480 * 10 9 7
34 34 H 1.09000 * 109.67592 * 110.79663 * 10 9 7
35 35 H 1.08999 * 109.51295 * 67.62352 * 11 10 9
36 36 H 1.08998 * 109.51306 * 187.77705 * 11 10 9
37 37 H 1.08992 * 109.51322 * 57.34766 * 13 12 11
38 38 H 1.09005 * 109.51115 * 177.44399 * 13 12 11
39 39 H 1.09002 * 109.47151 * 214.97492 * 21 20 18
40 40 H 1.09001 * 109.47048 * 334.97936 * 21 20 18
41 41 H 0.96999 * 119.99571 * 359.97438 * 22 21 20
42 42 H 1.08002 * 125.98647 * 359.97438 * 26 25 23
43 43 H 1.07999 * 126.29311 * 180.24624 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 1.2852 2.7465 -0.0006
5 1 3.1039 1.6965 1.2126
6 1 3.1040 1.6964 -1.2125
7 6 2.0102 -1.2021 0.0005
8 1 3.0309 -1.2364 -0.3506
9 7 1.4006 -2.3445 0.4462
10 6 0.3693 -2.2931 1.4946
11 6 0.7325 -3.3123 2.5805
12 8 0.9578 -4.5869 1.9734
13 6 2.0529 -4.6121 1.0547
14 6 1.7532 -3.6589 -0.1133
15 1 0.9192 -4.0438 -0.7002
16 6 2.9728 -3.5274 -0.9889
17 7 4.0526 -2.8539 -0.6908
18 7 4.9330 -2.9979 -1.7756
19 1 5.8215 -2.6173 -1.8577
20 6 4.2977 -3.7634 -2.6796
21 6 4.8436 -4.1900 -4.0179
22 7 5.4552 -5.5156 -3.8958
23 6 6.0122 -6.1027 -4.9734
24 8 6.0076 -5.5318 -6.0472
25 6 6.6282 -7.4365 -4.8504
26 6 6.7098 -8.2175 -3.6758
27 7 7.3238 -9.3296 -3.9725
28 7 7.6599 -9.3132 -5.3307
29 1 8.1227 -10.0193 -5.8086
30 6 7.2286 -8.1583 -5.8624
31 7 3.1229 -4.0739 -2.1947
32 1 -0.4850 -0.8360 -0.0815
33 1 0.3344 -1.2930 1.9266
34 1 -0.6017 -2.5428 1.0668
35 1 1.6374 -2.9891 3.0951
36 1 -0.0862 -3.3894 3.2959
37 1 2.9625 -4.2938 1.5637
38 1 2.1847 -5.6247 0.6731
39 1 4.0326 -4.2296 -4.7452
40 1 5.5943 -3.4726 -4.3494
41 1 5.4592 -5.9708 -3.0392
42 1 6.3303 -7.9421 -2.7029
43 1 7.3340 -7.8498 -6.8920
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001070580130.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:11:10
Heat of formation + Delta-G solvation = 91.712473 kcal
Electronic energy + Delta-G solvation = -29950.699287 eV
Core-core repulsion = 25648.748771 eV
Total energy + Delta-G solvation = -4301.950516 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.149 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-43.30033 -42.31292 -40.25337 -40.05486 -36.77863 -36.11553 -34.48742 -33.20256
-32.87745 -32.40020 -31.68133 -31.04631 -28.65574 -28.08895 -25.60175 -25.11819
-23.97997 -23.00003 -22.78752 -21.82383 -21.16017 -21.06561 -19.85359 -19.38567
-18.77224 -17.53423 -17.32307 -17.09634 -16.92682 -16.44735 -16.29638 -16.00083
-15.73790 -15.61623 -15.54124 -15.45831 -15.37351 -15.00973 -14.54727 -14.42744
-14.07605 -13.80208 -13.67561 -13.36891 -12.95382 -12.62871 -12.55958 -12.24778
-12.19861 -11.99279 -11.85372 -11.35808 -11.19791 -11.14078 -11.09109 -10.96154
-10.86608 -10.52405 -10.32904 -10.25143 -9.80045 -8.92615 -8.15424 -5.41889
0.44269 0.55440 1.13386 1.51247 1.53580 1.60447 1.66405 1.79484
1.84339 2.36289 2.43471 2.61203 2.72187 2.92952 3.24461 3.38012
3.58645 3.65121 3.77217 3.91974 4.03708 4.09873 4.14765 4.29854
4.38628 4.41470 4.44922 4.52513 4.52745 4.72787 4.74314 4.86510
4.98071 5.16932 5.18489 5.21557 5.25958 5.34601 5.99934 6.13632
6.17624 6.22656 6.39539 6.44712 6.55101 6.94720 7.08377 7.18745
7.75096 8.16641 9.04996
Molecular weight = 347.15amu
Principal moments of inertia in cm(-1)
A = 0.014985 B = 0.002564 C = 0.002276
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1868.035406 B =10918.785540 C =12297.952475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C -0.080 4.080
3 Si 1.112 2.888
4 H -0.293 1.293
5 H -0.278 1.278
6 H -0.284 1.284
7 C -0.343 4.343
8 H 0.082 0.918
9 N -0.609 5.609
10 C 0.128 3.872
11 C 0.053 3.947
12 O -0.389 6.389
13 C 0.073 3.927
14 C 0.220 3.780
15 H 0.044 0.956
16 C 0.238 3.762
17 N -0.286 5.286
18 N -0.464 5.464
19 H 0.455 0.545
20 C 0.266 3.734
21 C 0.217 3.783
22 N -0.712 5.712
23 C 0.605 3.395
24 O -0.581 6.581
25 C -0.319 4.319
26 C 0.088 3.912
27 N -0.324 5.324
28 N -0.451 5.451
29 H 0.460 0.540
30 C 0.151 3.849
31 N -0.542 5.542
32 H 0.253 0.747
33 H 0.060 0.940
34 H 0.013 0.987
35 H 0.050 0.950
36 H 0.117 0.883
37 H 0.050 0.950
38 H 0.115 0.885
39 H 0.100 0.900
40 H 0.115 0.885
41 H 0.412 0.588
42 H 0.208 0.792
43 H 0.218 0.782
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.592 -17.244 -8.268 25.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.276 4.276
3 Si 0.937 3.063
4 H -0.219 1.219
5 H -0.204 1.204
6 H -0.210 1.210
7 C -0.473 4.473
8 H 0.099 0.901
9 N -0.336 5.336
10 C 0.003 3.997
11 C -0.025 4.025
12 O -0.307 6.307
13 C -0.007 4.007
14 C 0.112 3.888
15 H 0.061 0.939
16 C -0.044 4.044
17 N -0.115 5.115
18 N -0.185 5.185
19 H 0.303 0.697
20 C -0.013 4.013
21 C 0.090 3.910
22 N -0.365 5.365
23 C 0.394 3.606
24 O -0.462 6.462
25 C -0.334 4.334
26 C -0.100 4.100
27 N -0.145 5.145
28 N -0.157 5.157
29 H 0.308 0.692
30 C -0.003 4.003
31 N -0.272 5.272
32 H 0.063 0.937
33 H 0.079 0.921
34 H 0.031 0.969
35 H 0.068 0.932
36 H 0.135 0.865
37 H 0.068 0.932
38 H 0.133 0.867
39 H 0.118 0.882
40 H 0.133 0.867
41 H 0.248 0.752
42 H 0.224 0.776
43 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 17.563 -16.286 -7.922 25.228
hybrid contribution 0.227 -0.540 -0.592 0.832
sum 17.790 -16.826 -8.514 25.924
Atomic orbital electron populations
1.70886 1.07471 1.29348 1.51487 1.27134 0.96759 1.04643 0.99029
0.82883 0.73797 0.72576 0.76996 1.21939 1.20411 1.21013 1.20726
0.96894 0.87591 1.42094 0.90084 1.44300 1.46411 1.01773 1.41121
1.21530 0.90260 0.98662 0.89294 1.23132 1.01480 0.83255 0.94619
1.87831 1.52024 1.31700 1.59108 1.22941 0.88992 0.99671 0.89056
1.19627 0.89188 0.88521 0.91483 0.93873 1.23669 0.94915 0.93818
0.92040 1.78233 1.02897 1.21527 1.08840 1.48100 1.17471 1.40016
1.12944 0.69679 1.24338 0.89069 0.93025 0.94888 1.19564 0.98970
0.85621 0.86800 1.45514 1.59217 1.18581 1.13161 1.17337 0.76402
0.84158 0.82696 1.90789 1.61010 1.66149 1.28229 1.20192 1.18598
0.98988 0.95639 1.24446 0.95462 0.90271 0.99836 1.77171 1.21257
1.22640 0.93445 1.46299 1.45278 1.16669 1.07451 0.69184 1.23476
0.91184 0.85309 1.00361 1.70249 1.18143 1.28800 1.09980 0.93696
0.92132 0.96871 0.93168 0.86479 0.93156 0.86663 0.88237 0.86672
0.75172 0.77581 0.76567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.48 12.57 21.65 0.27 -58.21 16
2 C -0.08 -4.58 4.77 84.86 0.40 -4.18 16
3 Si 1.11 52.14 29.97 68.60 2.06 54.19 16
4 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16
5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16
6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
7 C -0.34 -19.04 8.67 84.03 0.73 -18.31 16
8 H 0.08 4.47 4.99 -2.91 -0.01 4.45 16
9 N -0.61 -30.85 2.86 -677.11 -1.94 -32.78 16
10 C 0.13 6.07 4.87 86.35 0.42 6.49 16
11 C 0.05 1.99 6.99 72.08 0.50 2.49 16
12 O -0.39 -14.68 10.74 -148.98 -1.60 -16.28 16
13 C 0.07 2.64 6.29 72.22 0.45 3.10 16
14 C 0.22 9.64 3.64 44.36 0.16 9.80 16
15 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16
16 C 0.24 9.69 6.13 138.63 0.85 10.54 16
17 N -0.29 -11.05 10.05 -51.33 -0.52 -11.56 16
18 N -0.46 -12.64 7.45 -50.71 -0.38 -13.01 16
19 H 0.45 8.50 8.96 -213.09 -1.91 6.59 16
20 C 0.27 7.15 7.60 138.23 1.05 8.20 16
21 C 0.22 4.23 6.30 85.63 0.54 4.77 16
22 N -0.71 -11.82 5.54 -470.10 -2.60 -14.43 16
23 C 0.60 11.45 7.81 86.67 0.68 12.13 16
24 O -0.58 -14.71 16.90 -4.05 -0.07 -14.78 16
25 C -0.32 -4.73 6.13 -20.15 -0.12 -4.86 16
26 C 0.09 1.19 11.50 85.65 0.99 2.18 16
27 N -0.32 -4.87 12.63 -56.27 -0.71 -5.58 16
28 N -0.45 -4.01 7.29 -56.32 -0.41 -4.42 16
29 H 0.46 0.84 8.96 -213.42 -1.91 -1.08 16
30 C 0.15 1.53 11.82 84.28 1.00 2.53 16
31 N -0.54 -19.37 11.19 -179.73 -2.01 -21.38 16
32 H 0.25 15.95 6.51 -92.71 -0.60 15.34 16
33 H 0.06 3.17 6.67 -2.39 -0.02 3.15 16
34 H 0.01 0.66 7.69 -2.39 -0.02 0.64 16
35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16
37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
38 H 0.12 3.49 8.14 -2.38 -0.02 3.47 16
39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16
40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16
41 H 0.41 5.63 7.42 -92.71 -0.69 4.94 16
42 H 0.21 1.76 7.50 -2.91 -0.02 1.74 16
43 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16
Total: -1.00 -83.08 364.78 -3.48 -86.56
By element:
Atomic # 1 Polarization: 20.01 SS G_CDS: -3.22 Total: 16.79 kcal
Atomic # 6 Polarization: 27.24 SS G_CDS: 7.65 Total: 34.89 kcal
Atomic # 7 Polarization: -153.08 SS G_CDS: -8.29 Total: -161.38 kcal
Atomic # 8 Polarization: -29.38 SS G_CDS: -1.67 Total: -31.05 kcal
Atomic # 14 Polarization: 52.14 SS G_CDS: 2.06 Total: 54.19 kcal
Total: -83.08 -3.48 -86.56 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001070580130.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 178.277 kcal
(2) G-P(sol) polarization free energy of solvation -83.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds