Wall clock time and date at job start Wed Apr 1 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99695 * 2 1 4 4 H 1.48496 * 109.47232 * 239.99955 * 3 2 1 5 5 H 1.48500 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46993 * 119.99829 * 3 2 1 7 7 C 1.38809 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99569 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.58476 * 359.97438 * 9 7 2 11 11 C 1.54630 * 107.37872 * 179.12319 * 10 9 7 12 12 C 1.53512 * 102.70196 * 339.38454 * 11 10 9 13 13 C 1.51779 * 116.99706 * 164.17081 * 12 11 10 14 14 N 1.47386 * 87.52111 * 92.92898 * 13 12 11 15 15 C 1.34784 * 135.84959 * 205.66660 * 14 13 12 16 16 O 1.21278 * 120.00353 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99843 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47181 * 179.97438 * 17 15 14 19 19 C 1.33641 * 122.74743 * 85.02106 * 18 17 15 20 20 S 1.76204 * 107.92352 * 179.71363 * 19 18 17 21 21 C 1.70983 * 90.28057 * 0.26429 * 20 19 18 22 22 C 1.50702 * 124.91342 * 179.97438 * 21 20 19 23 23 C 1.52998 * 117.49897 * 8.76479 * 22 21 20 24 24 C 1.53001 * 117.49642 * 300.10651 * 22 21 20 25 25 N 1.29023 * 110.16768 * 359.97438 * 21 20 19 26 26 C 1.47388 * 88.29405 * 25.91741 * 14 13 12 27 27 C 1.47756 * 125.57835 * 180.02562 * 9 7 2 28 28 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.86269 * 59.67066 * 10 9 7 30 30 H 1.08997 * 109.97605 * 298.63627 * 10 9 7 31 31 H 1.09007 * 110.76109 * 221.08253 * 11 10 9 32 32 H 1.08997 * 110.76431 * 97.69162 * 11 10 9 33 33 H 1.09000 * 113.54628 * 338.25704 * 13 12 11 34 34 H 1.09007 * 113.60241 * 207.59966 * 13 12 11 35 35 H 1.09002 * 109.47158 * 59.99626 * 17 15 14 36 36 H 1.09007 * 109.46784 * 299.99623 * 17 15 14 37 37 H 1.08002 * 126.04199 * 359.97438 * 19 18 17 38 38 H 1.08996 * 115.54856 * 154.44118 * 22 21 20 39 39 H 1.08997 * 117.50434 * 0.02562 * 23 22 21 40 40 H 1.09008 * 117.49139 * 145.02128 * 23 22 21 41 41 H 1.08996 * 117.50181 * 214.98183 * 24 22 21 42 42 H 1.08999 * 117.49767 * 359.97438 * 24 22 21 43 43 H 1.08995 * 113.54432 * 88.74640 * 26 14 13 44 44 H 1.09001 * 113.54124 * 219.42204 * 26 14 13 45 45 H 1.08992 * 110.40611 * 83.47069 * 27 9 7 46 46 H 1.09003 * 110.40191 * 321.04251 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1388 -2.5312 -0.0017 11 6 -0.4549 -4.0446 -0.0257 12 6 0.8474 -4.6529 -0.5648 13 6 1.0382 -6.1473 -0.3798 14 7 0.4466 -6.3237 -1.7181 15 6 -0.2196 -7.3043 -2.3594 16 8 -0.4486 -8.3523 -1.7936 17 6 -0.6800 -7.0985 -3.7795 18 6 -1.3933 -8.3357 -4.2607 19 6 -2.6908 -8.5578 -4.0303 20 16 -3.1158 -10.1013 -4.7663 21 6 -1.5046 -10.2982 -5.3038 22 6 -0.9955 -11.4796 -6.0888 23 6 -2.0289 -12.4819 -6.6067 24 6 -1.1116 -12.8609 -5.4413 25 7 -0.7879 -9.2888 -4.9401 26 6 0.9062 -4.9638 -2.0522 27 6 1.9366 -3.7333 -0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5578 -2.0512 -0.8862 30 1 -0.5572 -2.0796 0.8978 31 1 -1.2869 -4.2550 -0.6977 32 1 -0.6659 -4.4113 0.9789 33 1 0.4323 -6.5675 0.4230 34 1 2.0838 -6.4500 -0.3225 35 1 0.1829 -6.9059 -4.4169 36 1 -1.3598 -6.2474 -3.8213 37 1 -3.3616 -7.9045 -3.4921 38 1 -0.1229 -11.2882 -6.7133 39 1 -3.0770 -12.2868 -6.3800 40 1 -1.8359 -12.9503 -7.5719 41 1 -0.3157 -13.5785 -5.6401 42 1 -1.5559 -12.9151 -4.4474 43 1 1.9151 -4.9339 -2.4637 44 1 0.1900 -4.3958 -2.6460 45 1 2.1987 -4.0318 1.0132 46 1 2.8176 -3.7506 -0.6434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073038228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:35 Heat of formation + Delta-G solvation = 107.681073 kcal Electronic energy + Delta-G solvation = -27239.198184 eV Core-core repulsion = 23451.940582 eV Total energy + Delta-G solvation = -3787.257602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78129 -40.10650 -38.26662 -37.43371 -35.65836 -32.42903 -32.04125 -29.81044 -28.95515 -27.92759 -26.05516 -25.94730 -25.39834 -23.66285 -22.90853 -21.68135 -20.34685 -20.13740 -19.24853 -18.34118 -17.85898 -16.98430 -16.63338 -16.48824 -15.92700 -15.58026 -15.08631 -14.78874 -14.53801 -14.38826 -14.04056 -13.98222 -13.79090 -13.41751 -12.92067 -12.66575 -12.45044 -12.29168 -12.18771 -12.06504 -11.95364 -11.83652 -11.47466 -11.21753 -11.02946 -11.00226 -10.93001 -10.68642 -10.44723 -10.21772 -10.15570 -9.88480 -9.83913 -9.71221 -9.61346 -9.50640 -8.82598 -8.62356 -8.54889 -6.86791 -5.73997 -3.07706 0.49984 1.13620 1.51618 2.41977 2.70529 3.01205 3.38644 3.38901 3.43497 3.44493 3.64958 4.31669 4.42329 4.46369 4.49801 4.52993 4.67516 4.81460 4.91473 4.98260 5.10709 5.14657 5.24791 5.27549 5.37181 5.46577 5.51452 5.53646 5.58153 5.62936 5.64480 5.68015 5.77504 5.81286 5.85802 5.98685 6.16492 6.20795 6.43827 6.49028 6.64263 6.68752 7.52492 7.57810 7.58105 7.79238 7.84307 8.21567 8.22916 9.18821 9.78824 10.44337 11.37496 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.001889 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.771575 B =14822.152873 C =14997.647222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.120 3.880 14 N -0.644 5.644 15 C 0.546 3.454 16 O -0.542 6.542 17 C -0.063 4.063 18 C 0.093 3.907 19 C -0.242 4.242 20 S 0.118 5.882 21 C 0.080 3.920 22 C -0.085 4.085 23 C -0.169 4.169 24 C -0.160 4.160 25 N -0.461 5.461 26 C 0.119 3.881 27 C 0.153 3.847 28 H 0.253 0.747 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.178 0.822 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -21.942 -12.068 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.003 4.003 14 N -0.379 5.379 15 C 0.335 3.665 16 O -0.420 6.420 17 C -0.105 4.105 18 C -0.039 4.039 19 C -0.381 4.381 20 S 0.374 5.626 21 C -0.198 4.198 22 C -0.107 4.107 23 C -0.207 4.207 24 C -0.198 4.198 25 N -0.175 5.175 26 C -0.003 4.003 27 C 0.026 3.974 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.195 0.805 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.040 -22.992 -12.105 26.677 hybrid contribution 0.950 1.811 0.365 2.077 sum -5.091 -21.181 -11.741 24.746 Atomic orbital electron populations 1.69950 1.04866 1.25165 1.56991 1.24799 0.95719 0.97666 1.02239 0.86202 0.78445 0.83213 0.77897 1.21178 1.21651 1.21187 1.18997 0.90413 0.82329 1.43923 0.90440 1.44530 1.01576 0.99669 1.87328 1.21218 0.84273 0.87807 1.01198 1.22466 0.94176 0.99214 0.99649 1.22179 0.99954 0.93394 0.95131 1.22761 0.98345 0.94240 0.84911 1.49816 1.54887 1.16297 1.16923 1.19822 0.77771 0.81844 0.87046 1.90701 1.57381 1.25821 1.68075 1.20113 1.01982 0.94454 0.93969 1.19423 0.90291 0.95891 0.98271 1.26775 1.00293 1.01436 1.09616 1.83721 1.12964 1.16807 1.49123 1.25983 0.93343 0.98111 1.02401 1.20401 1.02213 0.86000 1.02068 1.23157 0.96263 1.01767 0.99528 1.23160 1.02715 0.95840 0.98126 1.65876 1.37119 1.01217 1.13270 1.22918 1.00106 0.79700 0.97594 1.21142 0.93230 0.85710 0.97275 0.93700 0.93528 0.93824 0.92126 0.91831 0.90546 0.89846 0.87080 0.87018 0.80501 0.84922 0.88326 0.87224 0.87407 0.88164 0.89419 0.90015 0.95586 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.30 55.49 0.57 -25.72 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.09 10.28 -15.06 -0.15 -6.25 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.51 3.41 -170.53 -0.58 -15.10 16 10 C 0.18 4.12 5.39 -2.83 -0.02 4.11 16 11 C -0.12 -2.06 6.40 -25.61 -0.16 -2.22 16 12 C -0.10 -1.66 1.06 -155.22 -0.16 -1.83 16 13 C 0.12 1.72 8.02 -7.49 -0.06 1.66 16 14 N -0.64 -9.37 3.70 -185.74 -0.69 -10.06 16 15 C 0.55 8.43 8.07 -10.98 -0.09 8.34 16 16 O -0.54 -10.34 16.81 5.56 0.09 -10.25 16 17 C -0.06 -0.77 5.93 -29.04 -0.17 -0.94 16 18 C 0.09 1.24 5.23 -84.23 -0.44 0.80 16 19 C -0.24 -2.84 11.14 29.12 0.32 -2.52 16 20 S 0.12 1.18 21.94 -107.50 -2.36 -1.18 16 21 C 0.08 0.91 7.04 -13.46 -0.09 0.82 16 22 C -0.09 -0.72 6.33 -91.77 -0.58 -1.30 16 23 C -0.17 -0.98 10.02 -26.70 -0.27 -1.25 16 24 C -0.16 -1.07 10.24 -26.69 -0.27 -1.34 16 25 N -0.46 -6.44 10.53 -8.06 -0.08 -6.52 16 26 C 0.12 1.66 7.78 -7.34 -0.06 1.61 16 27 C 0.15 2.88 6.70 -3.22 -0.02 2.86 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.18 7.39 -51.93 -0.38 0.80 16 30 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 31 H 0.06 1.00 8.07 -51.92 -0.42 0.58 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 0.56 7.23 -51.93 -0.38 0.18 16 40 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -33.38 392.67 -11.50 -44.88 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.02 Total: -0.72 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.33 Total: 2.23 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.78 Total: -57.39 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.36 Total: -1.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.38 -11.50 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073038228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.561 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds