Wall clock time and date at job start Wed Apr 1 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99695 * 2 1 4 4 H 1.48496 * 109.47232 * 239.99955 * 3 2 1 5 5 H 1.48500 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46993 * 119.99829 * 3 2 1 7 7 C 1.38809 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99569 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.58476 * 359.97438 * 9 7 2 11 11 C 1.54630 * 107.37872 * 179.12319 * 10 9 7 12 12 C 1.53512 * 102.70196 * 339.38454 * 11 10 9 13 13 C 1.51779 * 116.99706 * 164.17081 * 12 11 10 14 14 N 1.47386 * 87.52111 * 92.92898 * 13 12 11 15 15 C 1.34784 * 135.84959 * 205.66660 * 14 13 12 16 16 O 1.21278 * 120.00353 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99843 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47181 * 179.97438 * 17 15 14 19 19 C 1.33641 * 122.74743 * 85.02106 * 18 17 15 20 20 S 1.76204 * 107.92352 * 179.71363 * 19 18 17 21 21 C 1.70983 * 90.28057 * 0.26429 * 20 19 18 22 22 C 1.50702 * 124.91342 * 179.97438 * 21 20 19 23 23 C 1.52998 * 117.49897 * 8.76479 * 22 21 20 24 24 C 1.53001 * 117.49642 * 300.10651 * 22 21 20 25 25 N 1.29023 * 110.16768 * 359.97438 * 21 20 19 26 26 C 1.47388 * 88.29405 * 25.91741 * 14 13 12 27 27 C 1.47756 * 125.57835 * 180.02562 * 9 7 2 28 28 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.86269 * 59.67066 * 10 9 7 30 30 H 1.08997 * 109.97605 * 298.63627 * 10 9 7 31 31 H 1.09007 * 110.76109 * 221.08253 * 11 10 9 32 32 H 1.08997 * 110.76431 * 97.69162 * 11 10 9 33 33 H 1.09000 * 113.54628 * 338.25704 * 13 12 11 34 34 H 1.09007 * 113.60241 * 207.59966 * 13 12 11 35 35 H 1.09002 * 109.47158 * 59.99626 * 17 15 14 36 36 H 1.09007 * 109.46784 * 299.99623 * 17 15 14 37 37 H 1.08002 * 126.04199 * 359.97438 * 19 18 17 38 38 H 1.08996 * 115.54856 * 154.44118 * 22 21 20 39 39 H 1.08997 * 117.50434 * 0.02562 * 23 22 21 40 40 H 1.09008 * 117.49139 * 145.02128 * 23 22 21 41 41 H 1.08996 * 117.50181 * 214.98183 * 24 22 21 42 42 H 1.08999 * 117.49767 * 359.97438 * 24 22 21 43 43 H 1.08995 * 113.54432 * 88.74640 * 26 14 13 44 44 H 1.09001 * 113.54124 * 219.42204 * 26 14 13 45 45 H 1.08992 * 110.40611 * 83.47069 * 27 9 7 46 46 H 1.09003 * 110.40191 * 321.04251 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1388 -2.5312 -0.0017 11 6 -0.4549 -4.0446 -0.0257 12 6 0.8474 -4.6529 -0.5648 13 6 1.0382 -6.1473 -0.3798 14 7 0.4466 -6.3237 -1.7181 15 6 -0.2196 -7.3043 -2.3594 16 8 -0.4486 -8.3523 -1.7936 17 6 -0.6800 -7.0985 -3.7795 18 6 -1.3933 -8.3357 -4.2607 19 6 -2.6908 -8.5578 -4.0303 20 16 -3.1158 -10.1013 -4.7663 21 6 -1.5046 -10.2982 -5.3038 22 6 -0.9955 -11.4796 -6.0888 23 6 -2.0289 -12.4819 -6.6067 24 6 -1.1116 -12.8609 -5.4413 25 7 -0.7879 -9.2888 -4.9401 26 6 0.9062 -4.9638 -2.0522 27 6 1.9366 -3.7333 -0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5578 -2.0512 -0.8862 30 1 -0.5572 -2.0796 0.8978 31 1 -1.2869 -4.2550 -0.6977 32 1 -0.6659 -4.4113 0.9789 33 1 0.4323 -6.5675 0.4230 34 1 2.0838 -6.4500 -0.3225 35 1 0.1829 -6.9059 -4.4169 36 1 -1.3598 -6.2474 -3.8213 37 1 -3.3616 -7.9045 -3.4921 38 1 -0.1229 -11.2882 -6.7133 39 1 -3.0770 -12.2868 -6.3800 40 1 -1.8359 -12.9503 -7.5719 41 1 -0.3157 -13.5785 -5.6401 42 1 -1.5559 -12.9151 -4.4474 43 1 1.9151 -4.9339 -2.4637 44 1 0.1900 -4.3958 -2.6460 45 1 2.1987 -4.0318 1.0132 46 1 2.8176 -3.7506 -0.6434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073038228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:34 Heat of formation + Delta-G solvation = 87.727808 kcal Electronic energy + Delta-G solvation = -27240.063422 eV Core-core repulsion = 23451.940582 eV Total energy + Delta-G solvation = -3788.122840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97963 -41.05810 -39.46267 -38.09026 -37.27302 -34.10313 -33.17305 -31.30005 -30.45025 -29.08237 -27.29245 -27.12736 -26.54464 -25.30424 -23.37820 -22.43388 -22.10931 -21.08671 -20.39244 -19.66221 -18.71610 -18.55701 -18.03035 -17.25200 -17.07590 -16.73507 -16.65378 -16.01256 -15.65598 -15.62089 -15.30784 -15.13803 -14.88474 -14.35372 -14.11905 -14.04200 -13.73588 -13.62661 -13.39445 -13.27925 -13.08991 -12.86993 -12.71495 -12.59383 -12.27409 -12.23682 -12.05745 -11.92320 -11.82622 -11.80617 -11.65810 -11.51900 -11.21403 -10.92447 -10.69029 -10.64351 -10.34773 -9.75151 -9.63679 -8.83458 -7.79774 -5.14261 -0.33133 0.34383 0.67982 1.45896 1.50142 1.52348 1.55576 1.58416 1.96882 2.53671 2.75853 3.00336 3.25973 3.40042 3.52823 3.61358 3.70052 3.78846 3.83187 3.97750 4.04028 4.08451 4.18741 4.23436 4.36724 4.40821 4.45661 4.58143 4.61571 4.67281 4.70144 4.72176 4.75856 4.87001 4.89085 4.95239 5.01916 5.05633 5.12197 5.15183 5.18957 5.21618 5.52121 5.70397 5.82660 6.24380 6.67402 6.73255 7.05340 7.15568 7.83000 8.47141 9.30355 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.027944 B = 0.001889 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.771575 B =14822.152873 C =14997.647222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.190 3.810 11 C -0.102 4.102 12 C -0.099 4.099 13 C 0.125 3.875 14 N -0.642 5.642 15 C 0.545 3.455 16 O -0.583 6.583 17 C -0.057 4.057 18 C 0.070 3.930 19 C -0.260 4.260 20 S 0.161 5.839 21 C 0.068 3.932 22 C -0.111 4.111 23 C -0.149 4.149 24 C -0.158 4.158 25 N -0.498 5.498 26 C 0.126 3.874 27 C 0.151 3.849 28 H 0.245 0.755 29 H 0.015 0.985 30 H 0.003 0.997 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.191 0.809 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 -23.631 -13.312 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.065 3.935 11 C -0.140 4.140 12 C -0.100 4.100 13 C 0.002 3.998 14 N -0.376 5.376 15 C 0.336 3.664 16 O -0.463 6.463 17 C -0.099 4.099 18 C -0.061 4.061 19 C -0.399 4.399 20 S 0.417 5.583 21 C -0.209 4.209 22 C -0.133 4.133 23 C -0.186 4.186 24 C -0.197 4.197 25 N -0.213 5.213 26 C 0.004 3.996 27 C 0.026 3.974 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.208 0.792 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.105 0.895 45 H 0.049 0.951 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.446 -24.702 -13.354 28.604 hybrid contribution 0.776 2.259 0.780 2.513 sum -4.670 -22.443 -12.574 26.146 Atomic orbital electron populations 1.70173 1.06219 1.25131 1.58620 1.25600 0.96539 1.00885 1.03028 0.85202 0.77100 0.79136 0.78190 1.20167 1.22536 1.20587 1.19416 0.91076 0.83559 1.42371 0.89658 1.44814 1.02218 1.01025 1.87071 1.20918 0.83894 0.90959 0.97739 1.22266 0.95709 0.95313 1.00733 1.21988 0.97483 0.93877 0.96681 1.22775 0.99599 0.92428 0.84982 1.49805 1.54532 1.16339 1.16968 1.20310 0.77022 0.81155 0.87907 1.90678 1.58972 1.27453 1.69242 1.20140 1.02785 0.95096 0.91878 1.19631 0.91010 0.96424 0.99066 1.27085 1.00335 1.02671 1.09783 1.83466 1.11508 1.15351 1.47982 1.26551 0.94153 0.98270 1.01949 1.20575 1.03685 0.85862 1.03137 1.23282 0.95698 0.99470 1.00191 1.23253 1.03517 0.94787 0.98148 1.65908 1.38372 1.02274 1.14711 1.22965 1.01368 0.79114 0.96182 1.21301 0.94366 0.83728 0.98031 0.94597 0.96685 0.97890 0.90756 0.91127 0.90681 0.87780 0.86177 0.84807 0.79208 0.84791 0.88131 0.84924 0.85735 0.89064 0.87516 0.89518 0.95057 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.99 10.30 21.65 0.22 -55.77 16 2 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 3 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.24 -12.54 10.28 84.03 0.86 -11.68 16 8 H 0.09 4.30 7.83 -2.92 -0.02 4.28 16 9 N -0.62 -29.99 3.41 -693.45 -2.36 -32.35 16 10 C 0.19 8.92 5.39 86.81 0.47 9.38 16 11 C -0.10 -3.52 6.40 31.32 0.20 -3.31 16 12 C -0.10 -2.94 1.06 -52.62 -0.06 -2.99 16 13 C 0.12 3.26 8.02 83.67 0.67 3.94 16 14 N -0.64 -17.31 3.70 -859.94 -3.18 -20.49 16 15 C 0.55 16.12 8.07 87.66 0.71 16.82 16 16 O -0.58 -21.88 16.81 -3.02 -0.05 -21.93 16 17 C -0.06 -1.33 5.93 29.10 0.17 -1.16 16 18 C 0.07 1.84 5.23 41.52 0.22 2.05 16 19 C -0.26 -5.88 11.14 66.78 0.74 -5.14 16 20 S 0.16 3.01 21.94 -56.49 -1.24 1.77 16 21 C 0.07 1.51 7.04 88.52 0.62 2.14 16 22 C -0.11 -1.74 6.33 -11.54 -0.07 -1.82 16 23 C -0.15 -1.38 10.02 30.62 0.31 -1.08 16 24 C -0.16 -1.86 10.24 30.62 0.31 -1.55 16 25 N -0.50 -13.75 10.53 -179.40 -1.89 -15.64 16 26 C 0.13 3.19 7.78 83.76 0.65 3.85 16 27 C 0.15 5.43 6.70 86.23 0.58 6.01 16 28 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.01 0.79 7.39 -2.38 -0.02 0.77 16 30 H 0.00 0.15 7.49 -2.39 -0.02 0.14 16 31 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.02 8.13 -2.39 -0.02 2.01 16 34 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 0.90 7.23 -2.39 -0.02 0.89 16 40 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 2.38 8.06 -2.39 -0.02 2.36 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 Total: -1.00 -74.03 392.67 1.36 -72.67 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.98 Total: 12.87 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.85 Total: 12.18 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -7.21 Total: -124.25 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.24 Total: 1.77 kcal Total: -74.03 1.36 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073038228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.395 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds