Wall clock time and date at job start Wed Apr 1 2020 04:08:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35728 * 116.99738 * 2 1
4 4 C 1.40446 * 119.68352 * 179.97438 * 3 2 1
5 5 C 1.36119 * 120.05871 * 180.02562 * 4 3 2
6 6 C 1.40740 * 119.29654 * 0.02562 * 5 4 3
7 7 N 1.33208 * 132.15713 * 179.97438 * 6 5 4
8 8 C 1.32250 * 109.69728 * 180.02562 * 7 6 5
9 9 C 1.38769 * 108.13612 * 0.02562 * 8 7 6
10 10 C 1.46186 * 126.76647 * 179.97438 * 9 8 7
11 11 O 1.21762 * 119.99829 * 0.02745 * 10 9 8
12 12 N 1.34776 * 120.00307 * 180.02562 * 10 9 8
13 13 C 1.46496 * 120.00084 * 179.97438 * 12 10 9
14 14 H 1.09008 * 110.91253 * 37.45558 * 13 12 10
15 15 C 1.54908 * 111.00674 * 273.55347 * 13 12 10
16 16 N 1.47425 * 104.92961 * 204.86080 * 15 13 12
17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 13
18 18 H 1.08005 * 119.99558 * 359.97438 * 17 16 15
19 19 C 1.38811 * 120.00146 * 180.02562 * 17 16 15
20 20 N 1.31620 * 120.00086 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99779 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47268 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47204 * 119.99715 * 21 19 17
24 24 H 1.48508 * 109.46889 * 239.99519 * 21 19 17
25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 13
26 26 C 1.54325 * 107.30599 * 358.92448 * 25 16 15
27 27 H 1.08997 * 110.72163 * 96.18354 * 26 25 16
28 28 O 1.42898 * 110.87178 * 219.38109 * 26 25 16
29 29 N 1.36462 * 119.19164 * 0.29050 * 6 5 4
30 30 N 1.31201 * 119.68720 * 359.97438 * 3 2 1
31 31 H 1.09003 * 109.46859 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47165 * 300.00202 * 1 2 3
33 33 H 1.08994 * 109.47095 * 59.99885 * 1 2 3
34 34 H 1.08012 * 119.96945 * 359.97438 * 4 3 2
35 35 H 1.07995 * 120.35257 * 179.97438 * 5 4 3
36 36 H 1.07993 * 125.93560 * 180.02562 * 8 7 6
37 37 H 0.97000 * 119.99844 * 0.02562 * 12 10 9
38 38 H 1.09002 * 110.36632 * 323.75475 * 15 13 12
39 39 H 1.08995 * 110.36781 * 85.96712 * 15 13 12
40 40 H 0.96999 * 120.00175 * 180.02562 * 20 19 17
41 41 H 1.09004 * 109.85762 * 239.50064 * 25 16 15
42 42 H 1.08999 * 109.87327 * 118.35916 * 25 16 15
43 43 H 0.96700 * 114.00884 * 293.61196 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2094 0.0000
4 6 3.4481 1.2752 0.0005
5 6 4.0739 2.4840 0.0011
6 6 3.3006 3.6599 0.0016
7 7 3.6344 4.9495 0.0026
8 6 2.5407 5.6930 0.0033
9 6 1.4420 4.8452 0.0033
10 6 0.0339 5.2378 0.0045
11 8 -0.2693 6.4171 0.0051
12 7 -0.9287 4.2946 0.0048
13 6 -2.3399 4.6881 0.0066
14 1 -2.4982 5.5716 -0.6119
15 6 -2.8492 4.9226 1.4506
16 7 -4.3050 4.7010 1.3805
17 6 -5.2340 5.2220 2.2412
18 1 -4.9187 5.8554 3.0573
19 6 -6.5807 4.9353 2.0655
20 7 -6.9649 4.1630 1.0713
21 14 -7.8479 5.6466 3.2392
22 1 -7.1636 6.4763 4.2631
23 1 -8.8080 6.4880 2.4806
24 1 -8.5797 4.5404 3.9074
25 6 -4.5913 3.8263 0.2306
26 6 -3.2447 3.5158 -0.4564
27 1 -2.8466 2.5617 -0.1110
28 8 -3.3862 3.5173 -1.8783
29 7 1.9395 3.5614 0.0076
30 7 1.3245 2.3058 -0.0005
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3633 0.5138 -0.8899
34 1 4.0309 0.3658 0.0014
35 1 5.1524 2.5401 0.0019
36 1 2.5082 6.7724 0.0038
37 1 -0.6872 3.3551 0.0047
38 1 -2.3896 4.2099 2.1354
39 1 -2.6357 5.9435 1.7671
40 1 -7.9061 3.9630 0.9483
41 1 -5.2543 4.3375 -0.4675
42 1 -5.0539 2.9013 0.5747
43 1 -3.9429 2.8038 -2.2191
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001077254012.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:30
Heat of formation + Delta-G solvation = 46.218806 kcal
Electronic energy + Delta-G solvation = -30807.772979 eV
Core-core repulsion = 26471.556959 eV
Total energy + Delta-G solvation = -4336.216020 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.143 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.90531 -40.28841 -39.48126 -37.83203 -37.11938 -35.11425 -34.44625 -33.81214
-31.75645 -31.07284 -30.13466 -28.44318 -28.01719 -27.04936 -24.99349 -24.33611
-23.76371 -22.48811 -21.00136 -20.50076 -20.23942 -19.10770 -19.04336 -17.20894
-17.13421 -17.05194 -16.83130 -16.48231 -15.98681 -15.71083 -15.33521 -14.77656
-14.68755 -14.47438 -14.14324 -14.12912 -13.99790 -13.79127 -13.22817 -13.01576
-12.72350 -12.50673 -12.48920 -12.11763 -11.79509 -11.58793 -11.54922 -11.28477
-11.13932 -10.91047 -10.84721 -10.48548 -10.18642 -10.04458 -9.93231 -9.86915
-9.51852 -9.38823 -8.93243 -8.69369 -8.54843 -6.93965 -5.78738 -3.12977
-0.10732 0.56532 1.16955 1.98721 2.40357 2.85014 3.17846 3.28945
3.37698 3.43807 3.46167 3.55662 3.60231 4.10258 4.41025 4.55593
4.57972 4.71582 4.77268 4.83423 4.93059 5.07331 5.11617 5.14490
5.19466 5.29045 5.40963 5.52532 5.52717 5.62178 5.77523 6.03654
6.09090 6.11812 6.38425 6.47312 6.60380 6.82929 7.00842 7.25483
7.28140 7.42932 7.64442 7.71488 8.05642 8.13664 8.28186 9.12428
9.72590 10.35809 11.33450
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.014817 B = 0.002960 C = 0.002683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.217375 B = 9457.028658 C =10433.550366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.284 6.284
3 C 0.356 3.644
4 C -0.169 4.169
5 C 0.021 3.979
6 C 0.163 3.837
7 N -0.457 5.457
8 C 0.103 3.897
9 C -0.047 4.047
10 C 0.593 3.407
11 O -0.523 6.523
12 N -0.705 5.705
13 C 0.138 3.862
14 H 0.106 0.894
15 C 0.130 3.870
16 N -0.599 5.599
17 C -0.227 4.227
18 H 0.082 0.918
19 C -0.008 4.008
20 N -0.924 5.924
21 Si 0.915 3.085
22 H -0.279 1.279
23 H -0.289 1.289
24 H -0.290 1.290
25 C 0.154 3.846
26 C 0.070 3.930
27 H 0.054 0.946
28 O -0.562 6.562
29 N -0.223 5.223
30 N -0.342 5.342
31 H 0.112 0.888
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.167 0.833
35 H 0.175 0.825
36 H 0.206 0.794
37 H 0.403 0.597
38 H 0.022 0.978
39 H 0.054 0.946
40 H 0.253 0.747
41 H 0.063 0.937
42 H 0.049 0.951
43 H 0.376 0.624
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.569 -11.080 -4.487 24.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.184 6.184
3 C 0.148 3.852
4 C -0.195 4.195
5 C -0.005 4.005
6 C -0.082 4.082
7 N -0.177 5.177
8 C -0.059 4.059
9 C -0.168 4.168
10 C 0.379 3.621
11 O -0.399 6.399
12 N -0.356 5.356
13 C 0.033 3.967
14 H 0.124 0.876
15 C 0.003 3.997
16 N -0.327 5.327
17 C -0.355 4.355
18 H 0.100 0.900
19 C -0.204 4.204
20 N -0.572 5.572
21 Si 0.746 3.254
22 H -0.204 1.204
23 H -0.216 1.216
24 H -0.217 1.217
25 C 0.029 3.971
26 C 0.010 3.990
27 H 0.072 0.928
28 O -0.367 6.367
29 N 0.003 4.997
30 N -0.177 5.177
31 H 0.130 0.870
32 H 0.089 0.911
33 H 0.088 0.912
34 H 0.185 0.815
35 H 0.193 0.807
36 H 0.222 0.778
37 H 0.239 0.761
38 H 0.040 0.960
39 H 0.072 0.928
40 H 0.063 0.937
41 H 0.081 0.919
42 H 0.067 0.933
43 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 21.329 -9.652 -4.395 23.821
hybrid contribution -1.293 -1.175 0.553 1.832
sum 20.036 -10.827 -3.843 23.096
Atomic orbital electron populations
1.23250 0.75474 1.04900 1.03606 1.86413 1.24254 1.21050 1.86677
1.20614 0.90769 0.85146 0.88699 1.20865 0.91259 1.00206 1.07148
1.20508 1.01544 0.86860 0.91605 1.21211 0.81845 0.95097 1.10035
1.70510 1.29151 0.98268 1.19758 1.23201 0.84512 1.00177 0.98032
1.21631 0.96582 0.79479 1.19068 1.16524 0.82371 0.85984 0.77270
1.90904 1.81851 1.16574 1.50568 1.45944 1.06250 1.09742 1.73687
1.22319 0.77272 0.98284 0.98798 0.87619 1.21842 0.86203 0.99413
0.92249 1.44309 0.99829 1.56890 1.31688 1.19150 0.86292 1.24317
1.05732 0.90014 1.24812 0.96936 1.00007 0.98640 1.69924 1.15041
1.40761 1.31468 0.85987 0.81392 0.78182 0.79871 1.20382 1.21629
1.21748 1.21859 0.90113 0.95608 0.89552 1.23424 0.98274 0.96158
0.81121 0.92809 1.86479 1.73253 1.56219 1.20727 1.46135 1.06501
1.02972 1.44077 1.75158 1.23989 0.88196 1.30383 0.87006 0.91149
0.91222 0.81510 0.80728 0.77761 0.76082 0.96042 0.92819 0.93709
0.91937 0.93261 0.77701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 10.38 101.05 1.05 1.20 16
2 O -0.28 -2.25 10.49 -18.89 -0.20 -2.45 16
3 C 0.36 3.22 7.60 -16.99 -0.13 3.09 16
4 C -0.17 -1.06 9.97 -39.51 -0.39 -1.45 16
5 C 0.02 0.15 10.10 -39.40 -0.40 -0.25 16
6 C 0.16 1.86 7.85 -156.13 -1.23 0.64 16
7 N -0.46 -5.73 11.25 -12.23 -0.14 -5.87 16
8 C 0.10 1.33 11.69 -17.18 -0.20 1.13 16
9 C -0.05 -0.69 7.10 -81.85 -0.58 -1.27 16
10 C 0.59 10.31 7.77 -13.07 -0.10 10.20 16
11 O -0.52 -10.47 16.65 5.13 0.09 -10.39 16
12 N -0.70 -11.97 5.23 -53.18 -0.28 -12.24 16
13 C 0.14 2.72 3.04 -65.79 -0.20 2.52 16
14 H 0.11 2.33 7.73 -51.92 -0.40 1.93 16
15 C 0.13 2.87 6.92 -2.53 -0.02 2.85 16
16 N -0.60 -15.42 3.40 -169.85 -0.58 -16.00 16
17 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16
18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16
19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16
20 N -0.92 -26.62 10.34 55.49 0.57 -26.05 16
21 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16
22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
25 C 0.15 3.64 5.16 -2.92 -0.02 3.63 16
26 C 0.07 1.31 3.95 -24.90 -0.10 1.21 16
27 H 0.05 0.88 8.00 -51.93 -0.42 0.47 16
28 O -0.56 -9.70 13.40 -35.23 -0.47 -10.18 16
29 N -0.22 -2.92 4.04 -8.68 -0.04 -2.95 16
30 N -0.34 -4.00 8.87 30.56 0.27 -3.73 16
31 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16
33 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16
34 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16
35 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16
36 H 0.21 2.17 8.06 -52.49 -0.42 1.75 16
37 H 0.40 6.16 6.50 -40.82 -0.27 5.89 16
38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
39 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16
40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
41 H 0.06 1.66 7.31 -51.93 -0.38 1.28 16
42 H 0.05 1.24 7.52 -51.93 -0.39 0.85 16
43 H 0.38 4.83 9.12 45.56 0.42 5.25 16
LS Contribution 368.96 15.07 5.56 5.56
Total: -1.00 -35.49 368.96 -7.15 -42.64
By element:
Atomic # 1 Polarization: 12.28 SS G_CDS: -4.36 Total: 7.92 kcal
Atomic # 6 Polarization: 19.23 SS G_CDS: -2.56 Total: 16.67 kcal
Atomic # 7 Polarization: -66.65 SS G_CDS: -0.18 Total: -66.84 kcal
Atomic # 8 Polarization: -22.43 SS G_CDS: -0.58 Total: -23.02 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -35.49 -7.15 -42.64 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001077254012.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.861 kcal
(2) G-P(sol) polarization free energy of solvation -35.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds