Wall clock time and date at job start Wed Apr 1 2020 04:08:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35728 * 116.99738 * 2 1
4 4 C 1.40446 * 119.68352 * 179.97438 * 3 2 1
5 5 C 1.36119 * 120.05871 * 180.02562 * 4 3 2
6 6 C 1.40740 * 119.29654 * 0.02562 * 5 4 3
7 7 N 1.33208 * 132.15713 * 179.97438 * 6 5 4
8 8 C 1.32250 * 109.69728 * 180.02562 * 7 6 5
9 9 C 1.38769 * 108.13612 * 0.02562 * 8 7 6
10 10 C 1.46186 * 126.76647 * 179.97438 * 9 8 7
11 11 O 1.21762 * 119.99829 * 0.02745 * 10 9 8
12 12 N 1.34776 * 120.00307 * 180.02562 * 10 9 8
13 13 C 1.46496 * 120.00084 * 179.97438 * 12 10 9
14 14 H 1.09008 * 110.91253 * 37.45558 * 13 12 10
15 15 C 1.54908 * 111.00674 * 273.55347 * 13 12 10
16 16 N 1.47425 * 104.92961 * 204.86080 * 15 13 12
17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 13
18 18 H 1.08005 * 119.99558 * 359.97438 * 17 16 15
19 19 C 1.38811 * 120.00146 * 180.02562 * 17 16 15
20 20 N 1.31620 * 120.00086 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99779 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47268 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47204 * 119.99715 * 21 19 17
24 24 H 1.48508 * 109.46889 * 239.99519 * 21 19 17
25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 13
26 26 C 1.54325 * 107.30599 * 358.92448 * 25 16 15
27 27 H 1.08997 * 110.72163 * 96.18354 * 26 25 16
28 28 O 1.42898 * 110.87178 * 219.38109 * 26 25 16
29 29 N 1.36462 * 119.19164 * 0.29050 * 6 5 4
30 30 N 1.31201 * 119.68720 * 359.97438 * 3 2 1
31 31 H 1.09003 * 109.46859 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47165 * 300.00202 * 1 2 3
33 33 H 1.08994 * 109.47095 * 59.99885 * 1 2 3
34 34 H 1.08012 * 119.96945 * 359.97438 * 4 3 2
35 35 H 1.07995 * 120.35257 * 179.97438 * 5 4 3
36 36 H 1.07993 * 125.93560 * 180.02562 * 8 7 6
37 37 H 0.97000 * 119.99844 * 0.02562 * 12 10 9
38 38 H 1.09002 * 110.36632 * 323.75475 * 15 13 12
39 39 H 1.08995 * 110.36781 * 85.96712 * 15 13 12
40 40 H 0.96999 * 120.00175 * 180.02562 * 20 19 17
41 41 H 1.09004 * 109.85762 * 239.50064 * 25 16 15
42 42 H 1.08999 * 109.87327 * 118.35916 * 25 16 15
43 43 H 0.96700 * 114.00884 * 293.61196 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2094 0.0000
4 6 3.4481 1.2752 0.0005
5 6 4.0739 2.4840 0.0011
6 6 3.3006 3.6599 0.0016
7 7 3.6344 4.9495 0.0026
8 6 2.5407 5.6930 0.0033
9 6 1.4420 4.8452 0.0033
10 6 0.0339 5.2378 0.0045
11 8 -0.2693 6.4171 0.0051
12 7 -0.9287 4.2946 0.0048
13 6 -2.3399 4.6881 0.0066
14 1 -2.4982 5.5716 -0.6119
15 6 -2.8492 4.9226 1.4506
16 7 -4.3050 4.7010 1.3805
17 6 -5.2340 5.2220 2.2412
18 1 -4.9187 5.8554 3.0573
19 6 -6.5807 4.9353 2.0655
20 7 -6.9649 4.1630 1.0713
21 14 -7.8479 5.6466 3.2392
22 1 -7.1636 6.4763 4.2631
23 1 -8.8080 6.4880 2.4806
24 1 -8.5797 4.5404 3.9074
25 6 -4.5913 3.8263 0.2306
26 6 -3.2447 3.5158 -0.4564
27 1 -2.8466 2.5617 -0.1110
28 8 -3.3862 3.5173 -1.8783
29 7 1.9395 3.5614 0.0076
30 7 1.3245 2.3058 -0.0005
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3633 0.5138 -0.8899
34 1 4.0309 0.3658 0.0014
35 1 5.1524 2.5401 0.0019
36 1 2.5082 6.7724 0.0038
37 1 -0.6872 3.3551 0.0047
38 1 -2.3896 4.2099 2.1354
39 1 -2.6357 5.9435 1.7671
40 1 -7.9061 3.9630 0.9483
41 1 -5.2543 4.3375 -0.4675
42 1 -5.0539 2.9013 0.5747
43 1 -3.9429 2.8038 -2.2191
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001077254012.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:29
Heat of formation + Delta-G solvation = 15.976124 kcal
Electronic energy + Delta-G solvation = -30809.084400 eV
Core-core repulsion = 26471.556959 eV
Total energy + Delta-G solvation = -4337.527441 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.143 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.78010 -41.12640 -40.78560 -39.38570 -37.88197 -36.75192 -35.76854 -34.88722
-33.63468 -31.90330 -31.16967 -30.12946 -28.94374 -28.53755 -26.59166 -25.43748
-24.63810 -23.57293 -22.49067 -21.93863 -21.80803 -20.15486 -19.76817 -19.07703
-18.41227 -17.83167 -17.78197 -17.72884 -17.31772 -16.80280 -16.55552 -16.03607
-15.97178 -15.68981 -15.60761 -15.29097 -14.95074 -14.77947 -14.54329 -14.44593
-14.31568 -13.84637 -13.73558 -13.25969 -13.21107 -13.01551 -12.82000 -12.77280
-12.53722 -12.42422 -12.08349 -11.92249 -11.78139 -11.64578 -11.53698 -11.25830
-10.98567 -10.81813 -10.37873 -10.33594 -9.50377 -9.01677 -7.92038 -5.29462
-0.75187 -0.31923 0.33046 1.06181 1.44556 1.46191 1.56470 1.74066
1.88405 2.05468 2.10174 2.44880 2.73702 2.86817 3.04012 3.28975
3.43789 3.51147 3.67054 3.83442 3.92805 3.93916 4.05011 4.08450
4.25465 4.27465 4.31785 4.34208 4.46394 4.48399 4.69675 4.72054
4.74995 4.86913 4.91177 5.20886 5.27221 5.32469 5.39220 5.61121
5.72751 6.08647 6.16535 6.26790 6.43933 6.79543 6.94745 7.01241
7.64083 8.27432 9.18274
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.014817 B = 0.002960 C = 0.002683
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.217375 B = 9457.028658 C =10433.550366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.277 6.277
3 C 0.352 3.648
4 C -0.143 4.143
5 C 0.017 3.983
6 C 0.171 3.829
7 N -0.473 5.473
8 C 0.110 3.890
9 C -0.087 4.087
10 C 0.594 3.406
11 O -0.561 6.561
12 N -0.697 5.697
13 C 0.151 3.849
14 H 0.078 0.922
15 C 0.133 3.867
16 N -0.620 5.620
17 C -0.249 4.249
18 H 0.081 0.919
19 C -0.059 4.059
20 N -0.947 5.947
21 Si 0.982 3.018
22 H -0.269 1.269
23 H -0.291 1.291
24 H -0.286 1.286
25 C 0.164 3.836
26 C 0.094 3.906
27 H 0.088 0.912
28 O -0.567 6.567
29 N -0.231 5.231
30 N -0.372 5.372
31 H 0.139 0.861
32 H 0.060 0.940
33 H 0.064 0.936
34 H 0.212 0.788
35 H 0.217 0.783
36 H 0.217 0.783
37 H 0.413 0.587
38 H 0.034 0.966
39 H 0.037 0.963
40 H 0.250 0.750
41 H 0.025 0.975
42 H 0.031 0.969
43 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.030 -13.548 -4.355 27.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.177 6.177
3 C 0.145 3.855
4 C -0.169 4.169
5 C -0.009 4.009
6 C -0.076 4.076
7 N -0.193 5.193
8 C -0.053 4.053
9 C -0.207 4.207
10 C 0.382 3.618
11 O -0.440 6.440
12 N -0.349 5.349
13 C 0.045 3.955
14 H 0.096 0.904
15 C 0.006 3.994
16 N -0.348 5.348
17 C -0.378 4.378
18 H 0.099 0.901
19 C -0.252 4.252
20 N -0.595 5.595
21 Si 0.810 3.190
22 H -0.193 1.193
23 H -0.218 1.218
24 H -0.213 1.213
25 C 0.038 3.962
26 C 0.034 3.966
27 H 0.106 0.894
28 O -0.375 6.375
29 N -0.004 5.004
30 N -0.209 5.209
31 H 0.157 0.843
32 H 0.079 0.921
33 H 0.082 0.918
34 H 0.229 0.771
35 H 0.234 0.766
36 H 0.234 0.766
37 H 0.251 0.749
38 H 0.051 0.949
39 H 0.056 0.944
40 H 0.060 0.940
41 H 0.044 0.956
42 H 0.049 0.951
43 H 0.248 0.752
Dipole moment (debyes) X Y Z Total
from point charges 23.812 -12.165 -4.275 27.079
hybrid contribution -1.957 -0.587 0.483 2.099
sum 21.856 -12.751 -3.792 25.586
Atomic orbital electron populations
1.23406 0.75006 1.06485 1.02827 1.86449 1.24739 1.20284 1.86254
1.21154 0.92147 0.84802 0.87410 1.21394 0.89997 1.01624 1.03846
1.21083 1.03204 0.85191 0.91377 1.22048 0.81730 0.96073 1.07720
1.70548 1.28739 0.98923 1.21110 1.23455 0.84302 1.00795 0.96707
1.21129 0.95180 0.80944 1.23404 1.16859 0.83508 0.85389 0.76059
1.90867 1.82760 1.18006 1.52364 1.45743 1.04918 1.10333 1.73877
1.21860 0.79142 0.97860 0.96649 0.90405 1.21866 0.84672 0.98721
0.94098 1.44561 1.01061 1.57229 1.31912 1.19473 0.87309 1.24644
1.06339 0.90142 1.25643 0.98654 1.00560 1.00363 1.70114 1.15092
1.41566 1.32713 0.84969 0.78617 0.77464 0.77988 1.19333 1.21796
1.21270 1.21660 0.92280 0.93782 0.88485 1.23079 0.94996 0.96970
0.81564 0.89444 1.86445 1.73766 1.57723 1.19524 1.46101 1.07049
1.02900 1.44337 1.75101 1.25170 0.88361 1.32275 0.84314 0.92149
0.91769 0.77077 0.76633 0.76630 0.74871 0.94852 0.94424 0.94030
0.95628 0.95131 0.75224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 10.38 113.37 1.18 1.38 16
2 O -0.28 -3.53 10.49 -90.50 -0.95 -4.48 16
3 C 0.35 5.30 7.60 85.32 0.65 5.95 16
4 C -0.14 -1.13 9.97 22.31 0.22 -0.90 16
5 C 0.02 0.17 10.10 22.39 0.23 0.39 16
6 C 0.17 3.55 7.85 134.06 1.05 4.60 16
7 N -0.47 -11.31 11.25 -192.61 -2.17 -13.48 16
8 C 0.11 2.86 11.69 84.76 0.99 3.86 16
9 C -0.09 -2.60 7.10 40.42 0.29 -2.31 16
10 C 0.59 21.35 7.77 86.31 0.67 22.02 16
11 O -0.56 -23.65 16.65 -4.55 -0.08 -23.73 16
12 N -0.70 -24.01 5.23 -440.36 -2.30 -26.31 16
13 C 0.15 6.10 3.04 46.38 0.14 6.24 16
14 H 0.08 3.61 7.73 -2.38 -0.02 3.59 16
15 C 0.13 6.06 6.92 86.85 0.60 6.66 16
16 N -0.62 -32.93 3.40 -691.30 -2.35 -35.28 16
17 C -0.25 -14.34 10.28 84.03 0.86 -13.47 16
18 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16
19 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16
20 N -0.95 -55.86 10.34 21.65 0.22 -55.63 16
21 Si 0.98 46.01 29.55 68.60 2.03 48.04 16
22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
24 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16
25 C 0.16 7.96 5.16 86.68 0.45 8.40 16
26 C 0.09 3.50 3.95 31.78 0.13 3.63 16
27 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16
28 O -0.57 -19.24 13.40 -148.98 -2.00 -21.24 16
29 N -0.23 -5.82 4.04 -181.37 -0.73 -6.55 16
30 N -0.37 -8.12 8.87 -170.59 -1.51 -9.63 16
31 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16
33 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16
34 H 0.21 -0.21 8.06 -2.90 -0.02 -0.23 16
35 H 0.22 0.30 8.06 -2.91 -0.02 0.27 16
36 H 0.22 4.73 8.06 -2.91 -0.02 4.71 16
37 H 0.41 12.50 6.50 -92.71 -0.60 11.89 16
38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16
39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16
40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16
41 H 0.03 1.42 7.31 -2.38 -0.02 1.40 16
42 H 0.03 1.58 7.52 -2.39 -0.02 1.56 16
43 H 0.40 9.72 9.12 -74.06 -0.68 9.04 16
Total: -1.00 -80.76 368.96 -2.11 -82.87
By element:
Atomic # 1 Polarization: 22.06 SS G_CDS: -0.19 Total: 21.87 kcal
Atomic # 6 Polarization: 35.64 SS G_CDS: 7.92 Total: 43.56 kcal
Atomic # 7 Polarization: -138.04 SS G_CDS: -8.84 Total: -146.89 kcal
Atomic # 8 Polarization: -46.43 SS G_CDS: -3.02 Total: -49.45 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal
Total: -80.76 -2.11 -82.87 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001077254012.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.850 kcal
(2) G-P(sol) polarization free energy of solvation -80.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.976 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds