Wall clock time and date at job start Wed Apr 1 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47103 * 299.99623 * 3 2 1 6 6 H 1.48497 * 109.47430 * 59.99909 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99778 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.88836 * 26.83430 * 10 9 7 12 12 C 1.53954 * 113.65975 * 255.48888 * 10 9 7 13 13 C 1.53944 * 87.29736 * 220.70336 * 12 10 9 14 14 H 1.09002 * 113.66274 * 270.17503 * 13 12 10 15 15 N 1.46498 * 113.66713 * 139.20393 * 13 12 10 16 16 C 1.34777 * 119.99556 * 104.50326 * 15 13 12 17 17 O 1.21620 * 120.00188 * 0.02562 * 16 15 13 18 18 C 1.47260 * 119.99978 * 180.02562 * 16 15 13 19 19 N 1.29758 * 125.52683 * 180.02562 * 18 16 15 20 20 C 1.32598 * 116.75513 * 179.97438 * 19 18 16 21 21 C 1.34871 * 114.44258 * 0.07348 * 20 19 18 22 22 S 1.71624 * 109.56531 * 359.87771 * 21 20 19 23 23 C 1.51942 * 110.72363 * 179.86515 * 21 20 19 24 24 C 1.54242 * 104.84561 * 342.61459 * 23 21 20 25 25 C 1.52796 * 136.15739 * 180.02562 * 20 19 18 26 26 C 1.52906 * 113.74531 * 158.26590 * 10 9 7 27 27 C 1.52916 * 121.13435 * 265.10167 * 26 10 9 28 28 C 1.53952 * 86.78214 * 100.81440 * 27 26 10 29 29 C 1.52907 * 121.13467 * 13.65742 * 26 10 9 30 30 H 0.96998 * 119.99686 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00316 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.57775 * 106.09556 * 12 10 9 33 33 H 1.09005 * 113.64701 * 335.31820 * 12 10 9 34 34 H 0.96995 * 120.00499 * 284.50801 * 15 13 12 35 35 H 1.08999 * 110.37055 * 223.77632 * 23 21 20 36 36 H 1.09007 * 110.36830 * 101.45390 * 23 21 20 37 37 H 1.08999 * 110.95387 * 268.39409 * 24 23 21 38 38 H 1.08998 * 110.98267 * 144.68241 * 24 23 21 39 39 H 1.09002 * 110.31425 * 78.67776 * 25 20 19 40 40 H 1.09004 * 110.31287 * 316.59614 * 25 20 19 41 41 H 1.08999 * 113.66188 * 215.28377 * 27 26 10 42 42 H 1.08992 * 113.66142 * 346.34361 * 27 26 10 43 43 H 1.09002 * 113.58166 * 270.13468 * 28 27 26 44 44 H 1.08999 * 113.65570 * 139.34997 * 28 27 26 45 45 H 1.08998 * 113.66711 * 13.66238 * 29 26 10 46 46 H 1.09001 * 113.66128 * 144.71723 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0457 -3.5758 0.4557 12 6 2.0621 -4.3692 -1.3632 13 6 1.8560 -5.6868 -0.5942 14 1 2.7868 -6.1770 -0.3089 15 7 0.9047 -6.5986 -1.2343 16 6 1.3527 -7.6838 -1.8962 17 8 2.5465 -7.9063 -1.9617 18 6 0.3965 -8.6002 -2.5402 19 7 0.7081 -9.6721 -3.2018 20 6 -0.2962 -10.3724 -3.7108 21 6 -1.5178 -9.8574 -3.4630 22 16 -1.3589 -8.4209 -2.5374 23 6 -2.6019 -10.7214 -4.0850 24 6 -1.8653 -11.5941 -5.1218 25 6 -0.4421 -11.6520 -4.5330 26 6 1.2396 -4.8399 0.5198 27 6 1.3210 -5.2773 1.9828 28 6 -0.0079 -4.5283 2.1904 29 6 -0.2767 -4.7385 0.6892 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0190 -4.3121 -1.8820 33 1 1.2193 -4.0993 -1.9996 34 1 -0.0475 -6.4214 -1.1818 35 1 -3.3487 -10.0979 -4.5763 36 1 -3.0698 -11.3481 -3.3257 37 1 -1.8624 -11.1165 -6.1016 38 1 -2.3053 -12.5898 -5.1769 39 1 -0.3328 -12.5276 -3.8930 40 1 0.2978 -11.6742 -5.3331 41 1 1.2419 -6.3555 2.1221 42 1 2.1593 -4.8392 2.5244 43 1 0.1200 -3.4821 2.4681 44 1 -0.7101 -5.0545 2.8370 45 1 -0.7148 -3.8701 0.1973 46 1 -0.8048 -5.6653 0.4650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078679800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:02 Heat of formation + Delta-G solvation = 72.222041 kcal Electronic energy + Delta-G solvation = -27692.541156 eV Core-core repulsion = 23903.745935 eV Total energy + Delta-G solvation = -3788.795221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85243 -40.49060 -38.90524 -36.18396 -34.92303 -34.21286 -32.58321 -30.05340 -29.11752 -28.77022 -25.92397 -25.54309 -24.27089 -24.18125 -22.54395 -21.83155 -20.68074 -20.49713 -19.34386 -18.61917 -17.95251 -17.34991 -16.75679 -16.37656 -16.13762 -15.30647 -15.01209 -14.92310 -14.61248 -14.46649 -14.12728 -13.79659 -13.64762 -13.30946 -13.06788 -12.81938 -12.60846 -12.48861 -12.14000 -11.89330 -11.72205 -11.58795 -11.55615 -11.47589 -11.27055 -10.96628 -10.85745 -10.75856 -10.48204 -10.19373 -10.06563 -9.94772 -9.87449 -9.76009 -9.67610 -9.49644 -8.96019 -8.88890 -8.73255 -7.00376 -5.82777 -3.11122 0.01236 0.76608 1.34952 2.04944 2.67547 3.07640 3.40693 3.47478 3.48929 3.70586 3.98978 4.34353 4.47666 4.55142 4.63032 4.73471 4.87636 4.92193 5.00695 5.06144 5.15402 5.17371 5.21394 5.25692 5.37728 5.40620 5.46203 5.63936 5.64180 5.72992 5.80222 5.85832 5.93106 5.94958 6.03159 6.15290 6.29871 6.33719 6.45679 6.47883 6.57323 6.80569 6.86539 6.99958 7.20325 7.48322 7.68168 8.03140 8.36119 9.48089 10.03915 10.38979 11.39567 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018798 B = 0.002322 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.123219 B =12055.623573 C =12181.569975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.194 3.806 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.132 3.868 14 H 0.115 0.885 15 N -0.699 5.699 16 C 0.594 3.406 17 O -0.502 6.502 18 C 0.015 3.985 19 N -0.393 5.393 20 C 0.033 3.967 21 C -0.253 4.253 22 S 0.184 5.816 23 C -0.039 4.039 24 C -0.116 4.116 25 C -0.041 4.041 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.129 4.129 29 C -0.119 4.119 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 -23.282 -5.175 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.081 3.919 11 H 0.100 0.900 12 C -0.217 4.217 13 C 0.028 3.972 14 H 0.132 0.868 15 N -0.351 5.351 16 C 0.375 3.625 17 O -0.376 6.376 18 C -0.263 4.263 19 N -0.108 5.108 20 C -0.103 4.103 21 C -0.375 4.375 22 S 0.441 5.559 23 C -0.078 4.078 24 C -0.155 4.155 25 C -0.080 4.080 26 C -0.120 4.120 27 C -0.164 4.164 28 C -0.167 4.167 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.956 -22.575 -4.775 24.100 hybrid contribution -0.254 0.229 -0.566 0.661 sum -7.211 -22.346 -5.341 24.081 Atomic orbital electron populations 1.69662 1.05095 1.25647 1.57598 1.24742 0.95521 0.97734 1.02792 0.86126 0.78887 0.84082 0.77147 1.20498 1.21903 1.21888 1.19337 0.91171 0.84034 1.42711 0.90959 1.42348 1.05831 0.99439 1.86855 1.21042 0.94542 0.84310 0.92040 0.89980 1.24319 1.02032 0.94617 1.00702 1.22455 0.92647 0.87823 0.94307 0.86753 1.45805 1.10905 1.24437 1.53937 1.16691 0.86643 0.80260 0.78939 1.90849 1.14723 1.73137 1.58844 1.27375 0.94018 0.98963 1.05980 1.65688 1.34492 1.03598 1.06997 1.21888 0.85833 0.99906 1.02705 1.26848 1.02745 1.01384 1.06570 1.83834 1.06230 1.19323 1.46464 1.20749 0.94297 0.95325 0.97469 1.22348 0.94030 1.00616 0.98539 1.20906 0.97827 0.91576 0.97740 1.23593 0.97157 0.97928 0.93339 1.22721 0.98607 0.99279 0.95759 1.22728 0.96646 1.01664 0.95624 1.22461 0.94250 1.01310 0.97686 0.93520 0.77746 0.91780 0.89993 0.76673 0.89878 0.89247 0.90167 0.89263 0.89383 0.89713 0.90891 0.91270 0.89031 0.92393 0.90047 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.50 5.36 -52.99 -0.28 -16.79 16 10 C 0.19 3.64 4.35 -67.48 -0.29 3.34 16 11 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 12 C -0.17 -3.03 7.68 -25.75 -0.20 -3.23 16 13 C 0.13 1.99 4.08 -67.48 -0.28 1.72 16 14 H 0.11 1.79 7.54 -51.93 -0.39 1.40 16 15 N -0.70 -9.62 5.29 -54.50 -0.29 -9.90 16 16 C 0.59 9.27 7.81 -12.59 -0.10 9.17 16 17 O -0.50 -9.60 16.71 5.26 0.09 -9.51 16 18 C 0.01 0.21 7.47 -14.76 -0.11 0.10 16 19 N -0.39 -5.82 10.58 -6.57 -0.07 -5.89 16 20 C 0.03 0.37 7.63 -82.41 -0.63 -0.26 16 21 C -0.25 -2.44 7.18 -34.89 -0.25 -2.69 16 22 S 0.18 1.87 22.35 -107.50 -2.40 -0.54 16 23 C -0.04 -0.23 6.80 -26.62 -0.18 -0.41 16 24 C -0.12 -0.56 7.11 -25.49 -0.18 -0.74 16 25 C -0.04 -0.30 6.80 -26.25 -0.18 -0.48 16 26 C -0.12 -1.80 1.06 -154.71 -0.16 -1.96 16 27 C -0.13 -1.76 7.84 -26.28 -0.21 -1.97 16 28 C -0.13 -1.88 8.08 -25.75 -0.21 -2.09 16 29 C -0.12 -1.73 6.77 -26.28 -0.18 -1.90 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.39 9.48 5.87 -40.82 -0.24 9.24 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.40 4.72 6.08 -40.82 -0.25 4.47 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 46 H 0.07 0.83 6.96 -51.93 -0.36 0.47 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -32.41 385.17 -11.46 -43.88 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.61 Total: 10.75 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.40 Total: -8.37 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.08 Total: -58.92 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.41 -11.46 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078679800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.099 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds