Wall clock time and date at job start Wed Apr 1 2020 04:22:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86791 * 120.00116 * 2 1
4 4 H 1.48503 * 109.47315 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.47103 * 299.99623 * 3 2 1
6 6 H 1.48497 * 109.47430 * 59.99909 * 3 2 1
7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00330 * 179.97438 * 7 2 1
9 9 N 1.36940 * 119.99894 * 0.02562 * 7 2 1
10 10 C 1.46505 * 119.99778 * 180.02562 * 9 7 2
11 11 H 1.08998 * 112.88836 * 26.83430 * 10 9 7
12 12 C 1.53954 * 113.65975 * 255.48888 * 10 9 7
13 13 C 1.53944 * 87.29736 * 220.70336 * 12 10 9
14 14 H 1.09002 * 113.66274 * 270.17503 * 13 12 10
15 15 N 1.46498 * 113.66713 * 139.20393 * 13 12 10
16 16 C 1.34777 * 119.99556 * 104.50326 * 15 13 12
17 17 O 1.21620 * 120.00188 * 0.02562 * 16 15 13
18 18 C 1.47260 * 119.99978 * 180.02562 * 16 15 13
19 19 N 1.29758 * 125.52683 * 180.02562 * 18 16 15
20 20 C 1.32598 * 116.75513 * 179.97438 * 19 18 16
21 21 C 1.34871 * 114.44258 * 0.07348 * 20 19 18
22 22 S 1.71624 * 109.56531 * 359.87771 * 21 20 19
23 23 C 1.51942 * 110.72363 * 179.86515 * 21 20 19
24 24 C 1.54242 * 104.84561 * 342.61459 * 23 21 20
25 25 C 1.52796 * 136.15739 * 180.02562 * 20 19 18
26 26 C 1.52906 * 113.74531 * 158.26590 * 10 9 7
27 27 C 1.52916 * 121.13435 * 265.10167 * 26 10 9
28 28 C 1.53952 * 86.78214 * 100.81440 * 27 26 10
29 29 C 1.52907 * 121.13467 * 13.65742 * 26 10 9
30 30 H 0.96998 * 119.99686 * 0.02562 * 1 2 3
31 31 H 0.97000 * 120.00316 * 359.97438 * 9 7 2
32 32 H 1.09000 * 113.57775 * 106.09556 * 12 10 9
33 33 H 1.09005 * 113.64701 * 335.31820 * 12 10 9
34 34 H 0.96995 * 120.00499 * 284.50801 * 15 13 12
35 35 H 1.08999 * 110.37055 * 223.77632 * 23 21 20
36 36 H 1.09007 * 110.36830 * 101.45390 * 23 21 20
37 37 H 1.08999 * 110.95387 * 268.39409 * 24 23 21
38 38 H 1.08998 * 110.98267 * 144.68241 * 24 23 21
39 39 H 1.09002 * 110.31425 * 78.67776 * 25 20 19
40 40 H 1.09004 * 110.31287 * 316.59614 * 25 20 19
41 41 H 1.08999 * 113.66188 * 215.28377 * 27 26 10
42 42 H 1.08992 * 113.66142 * 346.34361 * 27 26 10
43 43 H 1.09002 * 113.58166 * 270.13468 * 28 27 26
44 44 H 1.08999 * 113.65570 * 139.34997 * 28 27 26
45 45 H 1.08998 * 113.66711 * 13.66238 * 29 26 10
46 46 H 1.09001 * 113.66128 * 144.71723 * 29 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 3.7103 1.3463 -0.0006
5 1 1.8916 2.3963 -1.2126
6 1 1.8916 2.3964 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0903 -1.2022 0.0001
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6568 0.0017
11 1 3.0457 -3.5758 0.4557
12 6 2.0621 -4.3692 -1.3632
13 6 1.8560 -5.6868 -0.5942
14 1 2.7868 -6.1770 -0.3089
15 7 0.9047 -6.5986 -1.2343
16 6 1.3527 -7.6838 -1.8962
17 8 2.5465 -7.9063 -1.9617
18 6 0.3965 -8.6002 -2.5402
19 7 0.7081 -9.6721 -3.2018
20 6 -0.2962 -10.3724 -3.7108
21 6 -1.5178 -9.8574 -3.4630
22 16 -1.3589 -8.4209 -2.5374
23 6 -2.6019 -10.7214 -4.0850
24 6 -1.8653 -11.5941 -5.1218
25 6 -0.4421 -11.6520 -4.5330
26 6 1.2396 -4.8399 0.5198
27 6 1.3210 -5.2773 1.9828
28 6 -0.0079 -4.5283 2.1904
29 6 -0.2767 -4.7385 0.6892
30 1 -0.4849 0.8401 -0.0004
31 1 0.3556 -2.3881 0.0005
32 1 3.0190 -4.3121 -1.8820
33 1 1.2193 -4.0993 -1.9996
34 1 -0.0475 -6.4214 -1.1818
35 1 -3.3487 -10.0979 -4.5763
36 1 -3.0698 -11.3481 -3.3257
37 1 -1.8624 -11.1165 -6.1016
38 1 -2.3053 -12.5898 -5.1769
39 1 -0.3328 -12.5276 -3.8930
40 1 0.2978 -11.6742 -5.3331
41 1 1.2419 -6.3555 2.1221
42 1 2.1593 -4.8392 2.5244
43 1 0.1200 -3.4821 2.4681
44 1 -0.7101 -5.0545 2.8370
45 1 -0.7148 -3.8701 0.1973
46 1 -0.8048 -5.6653 0.4650
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001078679800.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:22:01
Heat of formation + Delta-G solvation = 51.522730 kcal
Electronic energy + Delta-G solvation = -27693.438746 eV
Core-core repulsion = 23903.745935 eV
Total energy + Delta-G solvation = -3789.692810 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.04876 -41.42796 -40.09301 -36.88373 -36.29022 -35.84857 -34.18087 -31.87232
-29.81614 -29.49541 -27.05662 -26.78718 -25.91201 -25.46423 -23.80993 -22.66008
-21.84820 -21.69771 -20.30031 -19.60918 -19.45107 -18.68805 -18.04657 -17.47589
-17.04096 -16.56151 -16.36459 -16.18696 -16.10222 -15.65478 -15.14596 -14.90431
-14.65919 -14.44252 -14.31133 -13.87774 -13.77710 -13.53403 -13.19966 -13.14046
-13.03886 -12.90546 -12.75935 -12.37028 -12.33753 -12.28414 -12.14618 -12.02410
-11.93016 -11.85931 -11.64750 -11.38387 -11.13276 -11.01767 -10.75576 -10.72281
-10.55433 -10.11978 -9.63801 -8.95076 -7.93432 -5.20086 -0.88646 -0.07640
0.51035 1.10513 1.47591 1.48737 1.57640 1.60606 1.99443 2.56964
2.90873 3.36993 3.43118 3.43786 3.51731 3.58901 3.72912 3.89427
3.94596 4.00892 4.10312 4.12969 4.26308 4.36008 4.49399 4.50607
4.61857 4.71384 4.71803 4.74373 4.79530 4.85189 4.85872 5.00331
5.07673 5.08652 5.13185 5.15328 5.17940 5.21214 5.28593 5.46049
5.52003 5.60999 5.65711 6.14676 6.29531 6.51724 6.87574 7.37116
8.12180 8.37327 9.29646
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.018798 B = 0.002322 C = 0.002298
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.123219 B =12055.623573 C =12181.569975
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.965 5.965
2 C -0.072 4.072
3 Si 0.966 3.034
4 H -0.269 1.269
5 H -0.296 1.296
6 H -0.294 1.294
7 C -0.238 4.238
8 H 0.074 0.926
9 N -0.715 5.715
10 C 0.177 3.823
11 H 0.079 0.921
12 C -0.171 4.171
13 C 0.148 3.852
14 H 0.113 0.887
15 N -0.687 5.687
16 C 0.596 3.404
17 O -0.548 6.548
18 C -0.032 4.032
19 N -0.429 5.429
20 C 0.000 4.000
21 C -0.242 4.242
22 S 0.241 5.759
23 C -0.040 4.040
24 C -0.106 4.106
25 C -0.043 4.043
26 C -0.109 4.109
27 C -0.116 4.116
28 C -0.128 4.128
29 C -0.115 4.115
30 H 0.250 0.750
31 H 0.380 0.620
32 H 0.058 0.942
33 H 0.071 0.929
34 H 0.408 0.592
35 H 0.100 0.900
36 H 0.111 0.889
37 H 0.083 0.917
38 H 0.119 0.881
39 H 0.098 0.902
40 H 0.081 0.919
41 H 0.098 0.902
42 H 0.064 0.936
43 H 0.057 0.943
44 H 0.084 0.916
45 H 0.056 0.944
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.767 -25.686 -5.422 28.010
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.616 5.616
2 C -0.264 4.264
3 Si 0.796 3.204
4 H -0.194 1.194
5 H -0.224 1.224
6 H -0.221 1.221
7 C -0.371 4.371
8 H 0.091 0.909
9 N -0.354 5.354
10 C 0.066 3.934
11 H 0.096 0.904
12 C -0.213 4.213
13 C 0.044 3.956
14 H 0.131 0.869
15 N -0.338 5.338
16 C 0.379 3.621
17 O -0.425 6.425
18 C -0.308 4.308
19 N -0.145 5.145
20 C -0.136 4.136
21 C -0.365 4.365
22 S 0.498 5.502
23 C -0.080 4.080
24 C -0.145 4.145
25 C -0.083 4.083
26 C -0.111 4.111
27 C -0.154 4.154
28 C -0.165 4.165
29 C -0.152 4.152
30 H 0.059 0.941
31 H 0.214 0.786
32 H 0.077 0.923
33 H 0.090 0.910
34 H 0.246 0.754
35 H 0.118 0.882
36 H 0.129 0.871
37 H 0.102 0.898
38 H 0.137 0.863
39 H 0.116 0.884
40 H 0.099 0.901
41 H 0.117 0.883
42 H 0.083 0.917
43 H 0.076 0.924
44 H 0.103 0.897
45 H 0.074 0.926
46 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -8.860 -25.000 -5.014 26.994
hybrid contribution 0.278 0.860 -0.550 1.058
sum -8.582 -24.140 -5.563 26.217
Atomic orbital electron populations
1.69795 1.06317 1.25831 1.59645 1.25443 0.96328 1.00665 1.03961
0.85174 0.78276 0.80422 0.76504 1.19369 1.22383 1.22132 1.19673
0.91445 0.85315 1.40618 0.90850 1.42431 1.05606 1.00188 1.87139
1.21273 0.94828 0.83802 0.93464 0.90357 1.24169 1.01378 0.96030
0.99752 1.22145 0.92983 0.87092 0.93423 0.86904 1.45596 1.11166
1.23715 1.53373 1.16962 0.86472 0.80370 0.78283 1.90808 1.16769
1.74350 1.60611 1.26912 0.96098 0.99565 1.08194 1.65657 1.36915
1.04387 1.07571 1.22547 0.85765 1.01464 1.03779 1.27587 1.03720
1.00643 1.04560 1.83526 1.02300 1.18982 1.45422 1.21036 0.93536
0.95260 0.98146 1.22398 0.91934 1.02093 0.98046 1.21122 0.99619
0.90156 0.97406 1.23363 0.97588 0.95597 0.94570 1.22729 0.98094
1.00640 0.93890 1.22635 0.97737 1.00100 0.96030 1.22512 0.93412
1.01866 0.97440 0.94091 0.78583 0.92326 0.90995 0.75406 0.88171
0.87103 0.89835 0.86313 0.88384 0.90086 0.88342 0.91709 0.92398
0.89715 0.92565 0.87842
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -57.42 13.06 21.65 0.28 -57.13 16
2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16
3 Si 0.97 45.84 29.55 68.60 2.03 47.86 16
4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16
6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16
7 C -0.24 -12.91 9.98 84.03 0.84 -12.07 16
8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16
9 N -0.71 -34.29 5.36 -321.55 -1.72 -36.02 16
10 C 0.18 6.77 4.35 45.28 0.20 6.97 16
11 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16
12 C -0.17 -6.06 7.68 31.23 0.24 -5.83 16
13 C 0.15 4.44 4.08 45.28 0.18 4.63 16
14 H 0.11 3.51 7.54 -2.39 -0.02 3.49 16
15 N -0.69 -18.45 5.29 -444.59 -2.35 -20.80 16
16 C 0.60 18.79 7.81 86.61 0.68 19.47 16
17 O -0.55 -21.65 16.71 -4.09 -0.07 -21.72 16
18 C -0.03 -0.89 7.47 87.37 0.65 -0.24 16
19 N -0.43 -12.78 10.58 -174.70 -1.85 -14.63 16
20 C 0.00 0.01 7.63 42.35 0.32 0.33 16
21 C -0.24 -4.04 7.18 25.31 0.18 -3.86 16
22 S 0.24 4.38 22.35 -56.49 -1.26 3.11 16
23 C -0.04 -0.31 6.80 30.67 0.21 -0.10 16
24 C -0.11 -0.61 7.11 31.40 0.22 -0.39 16
25 C -0.04 -0.55 6.80 30.91 0.21 -0.34 16
26 C -0.11 -3.26 1.06 -52.31 -0.06 -3.32 16
27 C -0.12 -3.04 7.84 30.89 0.24 -2.80 16
28 C -0.13 -3.54 8.08 31.23 0.25 -3.29 16
29 C -0.11 -3.18 6.77 30.89 0.21 -2.97 16
30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
31 H 0.38 19.21 5.87 -92.71 -0.54 18.67 16
32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
33 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16
34 H 0.41 9.08 6.08 -92.71 -0.56 8.51 16
35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16
36 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16
37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16
38 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16
39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
42 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16
43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
45 H 0.06 1.89 6.43 -2.39 -0.02 1.87 16
46 H 0.10 2.16 6.96 -2.39 -0.02 2.14 16
Total: -1.00 -73.58 385.17 0.02 -73.56
By element:
Atomic # 1 Polarization: 33.23 SS G_CDS: -0.08 Total: 33.15 kcal
Atomic # 6 Polarization: -12.43 SS G_CDS: 5.05 Total: -7.38 kcal
Atomic # 7 Polarization: -122.95 SS G_CDS: -5.64 Total: -128.58 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal
Atomic # 16 Polarization: 4.38 SS G_CDS: -1.26 Total: 3.11 kcal
Total: -73.58 0.02 -73.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078679800.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.080 kcal
(2) G-P(sol) polarization free energy of solvation -73.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.523 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds