Wall clock time and date at job start Wed Apr 1 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 120.00116 * 2 1 4 4 H 1.48503 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47103 * 299.99623 * 3 2 1 6 6 H 1.48497 * 109.47430 * 59.99909 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00330 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99778 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.88836 * 26.83430 * 10 9 7 12 12 C 1.53954 * 113.65975 * 255.48888 * 10 9 7 13 13 C 1.53944 * 87.29736 * 220.70336 * 12 10 9 14 14 H 1.09002 * 113.66274 * 270.17503 * 13 12 10 15 15 N 1.46498 * 113.66713 * 139.20393 * 13 12 10 16 16 C 1.34777 * 119.99556 * 104.50326 * 15 13 12 17 17 O 1.21620 * 120.00188 * 0.02562 * 16 15 13 18 18 C 1.47260 * 119.99978 * 180.02562 * 16 15 13 19 19 N 1.29758 * 125.52683 * 180.02562 * 18 16 15 20 20 C 1.32598 * 116.75513 * 179.97438 * 19 18 16 21 21 C 1.34871 * 114.44258 * 0.07348 * 20 19 18 22 22 S 1.71624 * 109.56531 * 359.87771 * 21 20 19 23 23 C 1.51942 * 110.72363 * 179.86515 * 21 20 19 24 24 C 1.54242 * 104.84561 * 342.61459 * 23 21 20 25 25 C 1.52796 * 136.15739 * 180.02562 * 20 19 18 26 26 C 1.52906 * 113.74531 * 158.26590 * 10 9 7 27 27 C 1.52916 * 121.13435 * 265.10167 * 26 10 9 28 28 C 1.53952 * 86.78214 * 100.81440 * 27 26 10 29 29 C 1.52907 * 121.13467 * 13.65742 * 26 10 9 30 30 H 0.96998 * 119.99686 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00316 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.57775 * 106.09556 * 12 10 9 33 33 H 1.09005 * 113.64701 * 335.31820 * 12 10 9 34 34 H 0.96995 * 120.00499 * 284.50801 * 15 13 12 35 35 H 1.08999 * 110.37055 * 223.77632 * 23 21 20 36 36 H 1.09007 * 110.36830 * 101.45390 * 23 21 20 37 37 H 1.08999 * 110.95387 * 268.39409 * 24 23 21 38 38 H 1.08998 * 110.98267 * 144.68241 * 24 23 21 39 39 H 1.09002 * 110.31425 * 78.67776 * 25 20 19 40 40 H 1.09004 * 110.31287 * 316.59614 * 25 20 19 41 41 H 1.08999 * 113.66188 * 215.28377 * 27 26 10 42 42 H 1.08992 * 113.66142 * 346.34361 * 27 26 10 43 43 H 1.09002 * 113.58166 * 270.13468 * 28 27 26 44 44 H 1.08999 * 113.65570 * 139.34997 * 28 27 26 45 45 H 1.08998 * 113.66711 * 13.66238 * 29 26 10 46 46 H 1.09001 * 113.66128 * 144.71723 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0457 -3.5758 0.4557 12 6 2.0621 -4.3692 -1.3632 13 6 1.8560 -5.6868 -0.5942 14 1 2.7868 -6.1770 -0.3089 15 7 0.9047 -6.5986 -1.2343 16 6 1.3527 -7.6838 -1.8962 17 8 2.5465 -7.9063 -1.9617 18 6 0.3965 -8.6002 -2.5402 19 7 0.7081 -9.6721 -3.2018 20 6 -0.2962 -10.3724 -3.7108 21 6 -1.5178 -9.8574 -3.4630 22 16 -1.3589 -8.4209 -2.5374 23 6 -2.6019 -10.7214 -4.0850 24 6 -1.8653 -11.5941 -5.1218 25 6 -0.4421 -11.6520 -4.5330 26 6 1.2396 -4.8399 0.5198 27 6 1.3210 -5.2773 1.9828 28 6 -0.0079 -4.5283 2.1904 29 6 -0.2767 -4.7385 0.6892 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0190 -4.3121 -1.8820 33 1 1.2193 -4.0993 -1.9996 34 1 -0.0475 -6.4214 -1.1818 35 1 -3.3487 -10.0979 -4.5763 36 1 -3.0698 -11.3481 -3.3257 37 1 -1.8624 -11.1165 -6.1016 38 1 -2.3053 -12.5898 -5.1769 39 1 -0.3328 -12.5276 -3.8930 40 1 0.2978 -11.6742 -5.3331 41 1 1.2419 -6.3555 2.1221 42 1 2.1593 -4.8392 2.5244 43 1 0.1200 -3.4821 2.4681 44 1 -0.7101 -5.0545 2.8370 45 1 -0.7148 -3.8701 0.1973 46 1 -0.8048 -5.6653 0.4650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078679800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:01 Heat of formation + Delta-G solvation = 51.522730 kcal Electronic energy + Delta-G solvation = -27693.438746 eV Core-core repulsion = 23903.745935 eV Total energy + Delta-G solvation = -3789.692810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04876 -41.42796 -40.09301 -36.88373 -36.29022 -35.84857 -34.18087 -31.87232 -29.81614 -29.49541 -27.05662 -26.78718 -25.91201 -25.46423 -23.80993 -22.66008 -21.84820 -21.69771 -20.30031 -19.60918 -19.45107 -18.68805 -18.04657 -17.47589 -17.04096 -16.56151 -16.36459 -16.18696 -16.10222 -15.65478 -15.14596 -14.90431 -14.65919 -14.44252 -14.31133 -13.87774 -13.77710 -13.53403 -13.19966 -13.14046 -13.03886 -12.90546 -12.75935 -12.37028 -12.33753 -12.28414 -12.14618 -12.02410 -11.93016 -11.85931 -11.64750 -11.38387 -11.13276 -11.01767 -10.75576 -10.72281 -10.55433 -10.11978 -9.63801 -8.95076 -7.93432 -5.20086 -0.88646 -0.07640 0.51035 1.10513 1.47591 1.48737 1.57640 1.60606 1.99443 2.56964 2.90873 3.36993 3.43118 3.43786 3.51731 3.58901 3.72912 3.89427 3.94596 4.00892 4.10312 4.12969 4.26308 4.36008 4.49399 4.50607 4.61857 4.71384 4.71803 4.74373 4.79530 4.85189 4.85872 5.00331 5.07673 5.08652 5.13185 5.15328 5.17940 5.21214 5.28593 5.46049 5.52003 5.60999 5.65711 6.14676 6.29531 6.51724 6.87574 7.37116 8.12180 8.37327 9.29646 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018798 B = 0.002322 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.123219 B =12055.623573 C =12181.569975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.177 3.823 11 H 0.079 0.921 12 C -0.171 4.171 13 C 0.148 3.852 14 H 0.113 0.887 15 N -0.687 5.687 16 C 0.596 3.404 17 O -0.548 6.548 18 C -0.032 4.032 19 N -0.429 5.429 20 C 0.000 4.000 21 C -0.242 4.242 22 S 0.241 5.759 23 C -0.040 4.040 24 C -0.106 4.106 25 C -0.043 4.043 26 C -0.109 4.109 27 C -0.116 4.116 28 C -0.128 4.128 29 C -0.115 4.115 30 H 0.250 0.750 31 H 0.380 0.620 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -25.686 -5.422 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.066 3.934 11 H 0.096 0.904 12 C -0.213 4.213 13 C 0.044 3.956 14 H 0.131 0.869 15 N -0.338 5.338 16 C 0.379 3.621 17 O -0.425 6.425 18 C -0.308 4.308 19 N -0.145 5.145 20 C -0.136 4.136 21 C -0.365 4.365 22 S 0.498 5.502 23 C -0.080 4.080 24 C -0.145 4.145 25 C -0.083 4.083 26 C -0.111 4.111 27 C -0.154 4.154 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.214 0.786 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.860 -25.000 -5.014 26.994 hybrid contribution 0.278 0.860 -0.550 1.058 sum -8.582 -24.140 -5.563 26.217 Atomic orbital electron populations 1.69795 1.06317 1.25831 1.59645 1.25443 0.96328 1.00665 1.03961 0.85174 0.78276 0.80422 0.76504 1.19369 1.22383 1.22132 1.19673 0.91445 0.85315 1.40618 0.90850 1.42431 1.05606 1.00188 1.87139 1.21273 0.94828 0.83802 0.93464 0.90357 1.24169 1.01378 0.96030 0.99752 1.22145 0.92983 0.87092 0.93423 0.86904 1.45596 1.11166 1.23715 1.53373 1.16962 0.86472 0.80370 0.78283 1.90808 1.16769 1.74350 1.60611 1.26912 0.96098 0.99565 1.08194 1.65657 1.36915 1.04387 1.07571 1.22547 0.85765 1.01464 1.03779 1.27587 1.03720 1.00643 1.04560 1.83526 1.02300 1.18982 1.45422 1.21036 0.93536 0.95260 0.98146 1.22398 0.91934 1.02093 0.98046 1.21122 0.99619 0.90156 0.97406 1.23363 0.97588 0.95597 0.94570 1.22729 0.98094 1.00640 0.93890 1.22635 0.97737 1.00100 0.96030 1.22512 0.93412 1.01866 0.97440 0.94091 0.78583 0.92326 0.90995 0.75406 0.88171 0.87103 0.89835 0.86313 0.88384 0.90086 0.88342 0.91709 0.92398 0.89715 0.92565 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.42 13.06 21.65 0.28 -57.13 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.24 -12.91 9.98 84.03 0.84 -12.07 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.71 -34.29 5.36 -321.55 -1.72 -36.02 16 10 C 0.18 6.77 4.35 45.28 0.20 6.97 16 11 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 12 C -0.17 -6.06 7.68 31.23 0.24 -5.83 16 13 C 0.15 4.44 4.08 45.28 0.18 4.63 16 14 H 0.11 3.51 7.54 -2.39 -0.02 3.49 16 15 N -0.69 -18.45 5.29 -444.59 -2.35 -20.80 16 16 C 0.60 18.79 7.81 86.61 0.68 19.47 16 17 O -0.55 -21.65 16.71 -4.09 -0.07 -21.72 16 18 C -0.03 -0.89 7.47 87.37 0.65 -0.24 16 19 N -0.43 -12.78 10.58 -174.70 -1.85 -14.63 16 20 C 0.00 0.01 7.63 42.35 0.32 0.33 16 21 C -0.24 -4.04 7.18 25.31 0.18 -3.86 16 22 S 0.24 4.38 22.35 -56.49 -1.26 3.11 16 23 C -0.04 -0.31 6.80 30.67 0.21 -0.10 16 24 C -0.11 -0.61 7.11 31.40 0.22 -0.39 16 25 C -0.04 -0.55 6.80 30.91 0.21 -0.34 16 26 C -0.11 -3.26 1.06 -52.31 -0.06 -3.32 16 27 C -0.12 -3.04 7.84 30.89 0.24 -2.80 16 28 C -0.13 -3.54 8.08 31.23 0.25 -3.29 16 29 C -0.11 -3.18 6.77 30.89 0.21 -2.97 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.38 19.21 5.87 -92.71 -0.54 18.67 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.41 9.08 6.08 -92.71 -0.56 8.51 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.89 6.43 -2.39 -0.02 1.87 16 46 H 0.10 2.16 6.96 -2.39 -0.02 2.14 16 Total: -1.00 -73.58 385.17 0.02 -73.56 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.08 Total: 33.15 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.05 Total: -7.38 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.64 Total: -128.58 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.26 Total: 3.11 kcal Total: -73.58 0.02 -73.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078679800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.080 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds