Wall clock time and date at job start Wed Apr 1 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99625 * 2 1 4 4 H 1.48507 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47238 * 299.99603 * 3 2 1 6 6 H 1.48502 * 109.47291 * 60.00039 * 3 2 1 7 7 C 1.38813 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00219 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99780 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.94727 * 336.40215 * 10 9 7 12 12 C 1.53946 * 113.66405 * 107.81096 * 10 9 7 13 13 C 1.53958 * 87.29612 * 89.73904 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21623 * 120.00009 * 359.97438 * 16 15 13 18 18 C 1.47259 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.29765 * 125.52555 * 179.97438 * 18 16 15 20 20 C 1.32591 * 116.75162 * 179.97438 * 19 18 16 21 21 C 1.34620 * 114.31273 * 0.04985 * 20 19 18 22 22 S 1.71626 * 109.59910 * 359.66773 * 21 20 19 23 23 C 1.51942 * 110.68912 * 179.91132 * 21 20 19 24 24 C 1.54237 * 104.84585 * 342.61368 * 23 21 20 25 25 C 1.52803 * 136.15466 * 180.02562 * 20 19 18 26 26 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 27 27 C 1.52909 * 121.13536 * 209.38733 * 26 13 12 28 28 C 1.53952 * 86.78252 * 209.38099 * 27 26 13 29 29 C 1.53064 * 121.17777 * 100.75092 * 26 13 12 30 30 H 0.96995 * 119.99980 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00278 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.57626 * 204.34112 * 12 10 9 33 33 H 1.08997 * 113.57982 * 335.13359 * 12 10 9 34 34 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 35 35 H 1.09002 * 110.36733 * 223.77071 * 23 21 20 36 36 H 1.08997 * 110.36880 * 101.45611 * 23 21 20 37 37 H 1.08995 * 110.95111 * 268.37987 * 24 23 21 38 38 H 1.09002 * 110.97930 * 144.67977 * 24 23 21 39 39 H 1.08998 * 110.31018 * 316.47573 * 25 20 19 40 40 H 1.09002 * 110.31384 * 78.55744 * 25 20 19 41 41 H 1.09000 * 113.66588 * 94.90895 * 27 26 13 42 42 H 1.09002 * 113.66049 * 323.84790 * 27 26 13 43 43 H 1.09002 * 113.58142 * 139.33437 * 28 27 26 44 44 H 1.09004 * 113.57653 * 270.05037 * 28 27 26 45 45 H 1.09006 * 113.66264 * 36.13819 * 29 26 13 46 46 H 1.09001 * 113.71778 * 265.03884 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 1 3.0677 -3.5646 -0.4026 12 6 1.9927 -4.4081 1.3404 13 6 0.7243 -5.0994 0.8081 14 1 -0.1956 -4.5610 1.0357 15 7 0.6487 -6.5246 1.1387 16 6 -0.2301 -6.9559 2.0649 17 8 -0.9603 -6.1619 2.6267 18 6 -0.3065 -8.3886 2.3968 19 7 -1.1089 -8.9192 3.2677 20 6 -1.0310 -10.2330 3.4284 21 6 -0.1118 -10.8331 2.6492 22 16 0.6693 -9.6586 1.6714 23 6 -0.0906 -12.3314 2.9008 24 6 -0.8090 -12.5153 4.2532 25 6 -1.7309 -11.2810 4.2925 26 6 1.2663 -4.8227 -0.5946 27 6 0.3230 -4.6158 -1.7802 28 6 1.4444 -5.1945 -2.6620 29 6 1.9620 -5.9185 -1.4058 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0023 32 1 2.8275 -5.0908 1.4991 33 1 1.8087 -3.7579 2.1956 34 1 1.2312 -7.1579 0.6907 35 1 0.9365 -12.6908 2.9649 36 1 -0.6283 -12.8563 2.1112 37 1 -0.0972 -12.4961 5.0784 38 1 -1.3906 -13.4371 4.2640 39 1 -1.8355 -10.9193 5.3154 40 1 -2.7084 -11.5236 3.8757 41 1 0.1014 -3.5685 -1.9854 42 1 -0.5700 -5.2398 -1.7427 43 1 1.0844 -5.8703 -3.4377 44 1 2.1317 -4.4397 -3.0444 45 1 1.5304 -6.9093 -1.2629 46 1 3.0479 -5.9106 -1.3125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078679802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:10 Heat of formation + Delta-G solvation = 72.921655 kcal Electronic energy + Delta-G solvation = -27692.859700 eV Core-core repulsion = 23904.094817 eV Total energy + Delta-G solvation = -3788.764883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84949 -40.49112 -38.85884 -36.18830 -35.07471 -34.18533 -32.46608 -29.86978 -29.11575 -28.75071 -25.92947 -25.55509 -24.21423 -24.15026 -22.70986 -21.98895 -20.75264 -20.41214 -19.37030 -18.64167 -17.78309 -17.23544 -16.88831 -16.38557 -15.97577 -15.24388 -15.08802 -14.99639 -14.52887 -14.42251 -14.02808 -13.80143 -13.64019 -13.31658 -13.09392 -12.71586 -12.62847 -12.48150 -12.20286 -11.98812 -11.73473 -11.67079 -11.59886 -11.48747 -11.41288 -10.91378 -10.86046 -10.77032 -10.45162 -10.14339 -10.05342 -9.90870 -9.76886 -9.75890 -9.58263 -9.53364 -8.95578 -8.88779 -8.69404 -7.01495 -5.79795 -3.09877 0.02325 0.75900 1.33669 2.07593 2.71530 3.12161 3.42618 3.48116 3.50676 3.71997 3.97962 4.35054 4.46632 4.50029 4.64660 4.73672 4.85956 4.91748 4.96352 5.05665 5.14939 5.15249 5.24781 5.29858 5.36989 5.40165 5.46174 5.62098 5.63553 5.73456 5.77595 5.90175 5.92300 5.97230 6.01751 6.09508 6.12688 6.37658 6.53606 6.55950 6.67722 6.75199 6.83608 7.02135 7.21883 7.52167 7.69385 8.10203 8.37941 9.49370 10.04776 10.39244 11.42115 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002340 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.954707 B =11963.412853 C =12694.698897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.199 3.801 11 H 0.071 0.929 12 C -0.182 4.182 13 C 0.139 3.861 14 H 0.120 0.880 15 N -0.703 5.703 16 C 0.590 3.410 17 O -0.493 6.493 18 C 0.017 3.983 19 N -0.394 5.394 20 C 0.036 3.964 21 C -0.256 4.256 22 S 0.181 5.819 23 C -0.038 4.038 24 C -0.116 4.116 25 C -0.042 4.042 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.132 4.132 29 C -0.117 4.117 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.394 0.606 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -28.765 1.691 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.085 3.915 11 H 0.089 0.911 12 C -0.225 4.225 13 C 0.036 3.964 14 H 0.137 0.863 15 N -0.354 5.354 16 C 0.370 3.630 17 O -0.366 6.366 18 C -0.262 4.262 19 N -0.109 5.109 20 C -0.100 4.100 21 C -0.378 4.378 22 S 0.438 5.562 23 C -0.078 4.078 24 C -0.155 4.155 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.222 0.778 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.229 0.771 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.270 -27.555 1.574 27.694 hybrid contribution -0.209 0.096 0.491 0.542 sum 2.061 -27.459 2.065 27.614 Atomic orbital electron populations 1.69674 1.05107 1.25757 1.56974 1.24773 0.95514 0.97784 1.02559 0.86115 0.78782 0.84046 0.77182 1.20508 1.21864 1.21824 1.19282 0.91088 0.83758 1.43409 0.90899 1.42126 1.05853 0.99109 1.86672 1.20616 0.94630 0.84603 0.91657 0.91128 1.24340 0.96113 0.99700 1.02331 1.22602 1.00287 0.77839 0.95667 0.86265 1.45879 1.38553 1.10657 1.40350 1.16740 0.81487 0.83937 0.80805 1.90896 1.41459 1.53675 1.50593 1.27351 0.99594 0.98851 1.00370 1.65695 1.20117 1.10367 1.14706 1.21838 0.98916 0.88102 1.01144 1.26763 1.03640 1.03878 1.03548 1.83554 1.37344 0.97994 1.37301 1.20738 1.02165 0.86564 0.98287 1.22339 0.98510 0.97875 0.96796 1.20915 0.98222 0.90008 0.98978 1.23689 0.98586 0.98513 0.91890 1.22641 0.96066 1.02582 0.95022 1.22729 0.98973 0.99545 0.95711 1.22577 0.99939 0.96570 0.96446 0.93401 0.77805 0.91044 0.90592 0.77073 0.89967 0.89294 0.90187 0.89263 0.89665 0.89317 0.89722 0.91027 0.92222 0.89948 0.90862 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -16.88 4.85 -52.99 -0.26 -17.14 16 10 C 0.20 3.75 4.36 -67.48 -0.29 3.46 16 11 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 12 C -0.18 -3.17 7.68 -25.75 -0.20 -3.37 16 13 C 0.14 2.31 4.03 -67.48 -0.27 2.04 16 14 H 0.12 2.38 7.46 -51.93 -0.39 1.99 16 15 N -0.70 -9.84 5.25 -54.50 -0.29 -10.13 16 16 C 0.59 9.69 7.81 -12.60 -0.10 9.60 16 17 O -0.49 -10.34 16.67 5.26 0.09 -10.25 16 18 C 0.02 0.24 7.44 -14.76 -0.11 0.13 16 19 N -0.39 -6.00 10.58 -6.78 -0.07 -6.08 16 20 C 0.04 0.41 7.62 -82.49 -0.63 -0.22 16 21 C -0.26 -2.41 7.17 -34.97 -0.25 -2.66 16 22 S 0.18 1.74 22.31 -107.50 -2.40 -0.66 16 23 C -0.04 -0.21 6.80 -26.62 -0.18 -0.39 16 24 C -0.12 -0.54 7.11 -25.51 -0.18 -0.72 16 25 C -0.04 -0.31 6.80 -26.25 -0.18 -0.49 16 26 C -0.12 -1.92 0.92 -154.63 -0.14 -2.06 16 27 C -0.13 -1.97 7.62 -26.28 -0.20 -2.17 16 28 C -0.13 -1.72 8.08 -25.75 -0.21 -1.93 16 29 C -0.12 -1.41 7.16 -26.20 -0.19 -1.59 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 10.09 7.62 -40.82 -0.31 9.78 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 4.34 6.18 -40.82 -0.25 4.09 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.74 7.03 -51.93 -0.37 0.37 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -33.44 387.48 -11.51 -44.95 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.75 Total: 10.82 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.38 Total: -7.49 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.11 Total: -60.37 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.40 Total: -0.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.44 -11.51 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078679802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.874 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds