Wall clock time and date at job start Wed Apr 1 2020 04:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46977 * 60.00100 * 11 9 7 13 13 H 1.48497 * 109.47073 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46946 * 300.00062 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21570 * 119.99821 * 359.97438 * 19 18 16 21 21 C 1.47681 * 119.99821 * 180.02562 * 19 18 16 22 22 C 1.39907 * 120.39033 * 359.97438 * 21 19 18 23 23 N 1.31449 * 121.13772 * 179.97438 * 22 21 19 24 24 C 1.32474 * 121.80561 * 359.97438 * 23 22 21 25 25 N 1.37881 * 133.43826 * 180.02562 * 24 23 22 26 26 H 0.96998 * 126.25248 * 359.97288 * 25 24 23 27 27 C 1.36516 * 107.49261 * 180.02562 * 25 24 23 28 28 O 1.35271 * 125.02165 * 180.02562 * 27 25 24 29 29 N 1.30719 * 109.95543 * 359.97438 * 27 25 24 30 30 C 1.35892 * 109.40007 * 359.97438 * 29 27 25 31 31 C 1.39410 * 133.63657 * 180.30274 * 30 29 27 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 35 35 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 36 36 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 37 37 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 39 39 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 40 40 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 41 41 H 1.07995 * 119.43256 * 359.95137 * 22 21 19 42 42 H 0.96699 * 114.00189 * 89.99185 * 28 27 25 43 43 H 1.08004 * 120.97026 * 359.92029 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.5497 5.2005 -5.0679 13 1 2.1928 5.3263 -5.6234 14 1 3.0831 6.6617 -3.8051 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4552 0.5700 2.2438 21 6 4.4566 1.2329 4.2482 22 6 3.3403 1.7964 4.8757 23 7 3.3020 1.9559 6.1799 24 6 4.3111 1.5929 6.9576 25 7 4.5259 1.6458 8.3186 26 1 3.9101 1.9917 8.9834 27 6 5.7640 1.1235 8.5593 28 8 6.3320 1.0042 9.7811 29 7 6.3189 0.7547 7.4347 30 6 5.4712 1.0173 6.4056 31 6 5.5447 0.8279 5.0263 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5140 0.8899 35 1 1.3761 2.2723 -1.8510 36 1 2.5795 0.9667 -2.0796 37 1 1.2604 3.2724 -4.3272 38 1 5.1530 2.2447 -0.3502 39 1 4.0965 3.3485 0.5715 40 1 2.6482 1.8385 2.4689 41 1 2.4956 2.1060 4.2782 42 1 6.1411 0.1658 10.2235 43 1 6.4192 0.3864 4.5718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081877031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:15 Heat of formation + Delta-G solvation = 16.659725 kcal Electronic energy + Delta-G solvation = -29724.322269 eV Core-core repulsion = 25386.824471 eV Total energy + Delta-G solvation = -4337.497798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.85790 -40.18643 -38.99062 -38.08409 -37.26102 -35.92791 -34.25733 -34.09491 -32.07132 -31.57322 -29.92862 -28.71130 -27.13145 -26.12408 -24.89511 -24.09913 -23.83171 -22.34572 -21.13374 -20.63911 -19.98844 -19.73855 -18.65664 -18.37027 -17.30009 -16.88774 -16.74448 -16.24244 -16.05298 -15.44471 -15.11493 -14.90637 -14.65334 -14.43313 -14.27608 -14.02156 -13.88013 -13.42749 -13.22270 -12.97268 -12.83442 -12.66714 -12.25042 -11.92502 -11.66912 -11.47278 -11.41193 -11.29896 -11.03060 -10.83385 -10.80809 -10.26404 -10.16046 -9.90883 -9.80635 -9.60025 -9.35835 -9.09704 -8.95438 -8.75222 -8.70521 -6.91159 -5.70578 -3.13441 0.24482 0.42084 1.57313 2.05354 2.76089 2.89916 3.23166 3.39523 3.43802 3.45010 3.57291 3.77274 4.08773 4.19374 4.38206 4.45107 4.47722 4.57237 4.88501 5.15823 5.23491 5.41028 5.49281 5.59058 5.61141 5.61666 5.66922 5.69159 5.83380 5.92985 5.96290 6.02206 6.06621 6.17364 6.41213 6.68127 6.84835 6.88099 7.05600 7.23468 7.32085 7.51901 7.58255 7.71210 7.77154 8.22796 8.27912 9.15155 9.75489 10.37638 11.33269 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.002233 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.720080 B =12534.962393 C =13290.433757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.140 3.860 6 N -0.601 5.601 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.130 3.870 16 C 0.139 3.861 17 H 0.105 0.895 18 N -0.708 5.708 19 C 0.568 3.432 20 O -0.528 6.528 21 C -0.188 4.188 22 C 0.178 3.822 23 N -0.481 5.481 24 C 0.267 3.733 25 N -0.587 5.587 26 H 0.430 0.570 27 C 0.465 3.535 28 O -0.436 6.436 29 N -0.466 5.466 30 C 0.005 3.995 31 C 0.049 3.951 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.113 0.887 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.396 0.604 41 H 0.173 0.827 42 H 0.414 0.586 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -5.826 24.965 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.034 3.966 17 H 0.123 0.877 18 N -0.359 5.359 19 C 0.353 3.647 20 O -0.405 6.405 21 C -0.196 4.196 22 C 0.009 3.991 23 N -0.194 5.194 24 C 0.031 3.969 25 N -0.214 5.214 26 H 0.270 0.730 27 C 0.159 3.841 28 O -0.238 6.238 29 N -0.198 5.198 30 C -0.115 4.115 31 C 0.021 3.979 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.131 0.869 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.231 0.769 41 H 0.190 0.810 42 H 0.274 0.726 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.054 -5.764 24.697 25.360 hybrid contribution -0.935 0.866 0.069 1.277 sum -0.882 -4.898 24.766 25.261 Atomic orbital electron populations 1.22703 0.81506 1.01931 1.00073 1.87842 1.19293 1.27634 1.95142 1.24082 0.92016 0.83838 1.00598 0.91490 1.22337 0.95400 0.91917 0.88946 1.44292 1.31886 1.33105 1.23544 1.19047 1.11192 1.04124 1.00650 0.90230 1.24800 0.98052 0.99320 0.98407 1.69731 1.19972 1.38644 1.28869 0.86107 0.77387 0.81336 0.80404 1.21098 1.21559 1.21123 1.21613 0.95311 0.93576 0.89220 1.22208 0.96690 1.00514 0.77175 0.87749 1.45879 1.18723 1.63237 1.08010 1.17725 0.83257 0.78412 0.85308 1.90818 1.32811 1.43892 1.72941 1.20753 0.96907 1.06860 0.95079 1.22784 0.96366 0.91839 0.88071 1.66381 1.27090 1.20391 1.05554 1.18714 0.93632 0.99789 0.84761 1.43024 1.17126 1.54780 1.06508 0.72993 1.20167 0.80860 0.95683 0.87365 1.84867 1.70409 1.43842 1.24665 1.70747 1.29414 1.23505 0.96085 1.19321 0.92372 1.05601 0.94170 1.20883 0.97774 0.90646 0.88589 0.93380 0.90331 0.94762 0.86945 0.95502 0.93550 0.94653 0.95121 0.76856 0.81010 0.72648 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.89 101.05 1.10 1.57 16 2 O -0.38 -6.62 10.52 -35.23 -0.37 -6.99 16 3 C 0.05 0.99 3.11 -24.44 -0.08 0.91 16 4 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 5 C 0.14 3.30 5.63 -2.53 -0.01 3.28 16 6 N -0.60 -15.09 3.39 -170.07 -0.58 -15.66 16 7 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.17 10.09 55.49 0.56 -25.61 16 11 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.13 2.74 6.98 -3.07 -0.02 2.72 16 16 C 0.14 2.49 2.99 -65.96 -0.20 2.29 16 17 H 0.10 2.06 7.70 -51.93 -0.40 1.66 16 18 N -0.71 -9.89 5.09 -52.90 -0.27 -10.15 16 19 C 0.57 8.30 7.77 -12.40 -0.10 8.20 16 20 O -0.53 -9.68 16.13 5.30 0.09 -9.59 16 21 C -0.19 -2.23 5.89 -104.85 -0.62 -2.84 16 22 C 0.18 1.77 10.69 -17.09 -0.18 1.59 16 23 N -0.48 -5.13 10.36 -11.92 -0.12 -5.26 16 24 C 0.27 2.83 8.45 -155.41 -1.31 1.51 16 25 N -0.59 -4.34 6.23 -13.35 -0.08 -4.42 16 26 H 0.43 1.79 8.96 -40.82 -0.37 1.42 16 27 C 0.46 3.80 9.39 -88.83 -0.83 2.97 16 28 O -0.44 -2.14 13.63 -17.51 -0.24 -2.38 16 29 N -0.47 -5.34 11.32 -12.21 -0.14 -5.48 16 30 C 0.01 0.06 7.22 -84.67 -0.61 -0.55 16 31 C 0.05 0.59 9.75 -38.58 -0.38 0.21 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 35 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 40 H 0.40 4.25 6.56 -40.82 -0.27 3.98 16 41 H 0.17 1.21 6.39 -52.49 -0.34 0.88 16 42 H 0.41 -0.31 9.06 45.56 0.41 0.10 16 43 H 0.16 1.93 7.72 -52.48 -0.41 1.52 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -35.99 367.02 -8.28 -44.27 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.14 Total: 3.79 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: -3.49 Total: 15.25 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.63 Total: -66.60 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.52 Total: -18.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.99 -8.28 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081877031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.929 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds