Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46977 * 60.00100 * 11 9 7 13 13 H 1.48497 * 109.47073 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.46946 * 300.00062 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21570 * 119.99821 * 359.97438 * 19 18 16 21 21 C 1.47681 * 119.99821 * 180.02562 * 19 18 16 22 22 C 1.39907 * 120.39033 * 359.97438 * 21 19 18 23 23 N 1.31449 * 121.13772 * 179.97438 * 22 21 19 24 24 C 1.32474 * 121.80561 * 359.97438 * 23 22 21 25 25 N 1.37881 * 133.43826 * 180.02562 * 24 23 22 26 26 H 0.96998 * 126.25248 * 359.97288 * 25 24 23 27 27 C 1.36516 * 107.49261 * 180.02562 * 25 24 23 28 28 O 1.35271 * 125.02165 * 180.02562 * 27 25 24 29 29 N 1.30719 * 109.95543 * 359.97438 * 27 25 24 30 30 C 1.35892 * 109.40007 * 359.97438 * 29 27 25 31 31 C 1.39410 * 133.63657 * 180.30274 * 30 29 27 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 35 35 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 36 36 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 37 37 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 39 39 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 40 40 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 41 41 H 1.07995 * 119.43256 * 359.95137 * 22 21 19 42 42 H 0.96699 * 114.00189 * 89.99185 * 28 27 25 43 43 H 1.08004 * 120.97026 * 359.92029 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.5497 5.2005 -5.0679 13 1 2.1928 5.3263 -5.6234 14 1 3.0831 6.6617 -3.8051 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4552 0.5700 2.2438 21 6 4.4566 1.2329 4.2482 22 6 3.3403 1.7964 4.8757 23 7 3.3020 1.9559 6.1799 24 6 4.3111 1.5929 6.9576 25 7 4.5259 1.6458 8.3186 26 1 3.9101 1.9917 8.9834 27 6 5.7640 1.1235 8.5593 28 8 6.3320 1.0042 9.7811 29 7 6.3189 0.7547 7.4347 30 6 5.4712 1.0173 6.4056 31 6 5.5447 0.8279 5.0263 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5140 0.8899 35 1 1.3761 2.2723 -1.8510 36 1 2.5795 0.9667 -2.0796 37 1 1.2604 3.2724 -4.3272 38 1 5.1530 2.2447 -0.3502 39 1 4.0965 3.3485 0.5715 40 1 2.6482 1.8385 2.4689 41 1 2.4956 2.1060 4.2782 42 1 6.1411 0.1658 10.2235 43 1 6.4192 0.3864 4.5718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081877031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -15.481759 kcal Electronic energy + Delta-G solvation = -29725.716029 eV Core-core repulsion = 25386.824471 eV Total energy + Delta-G solvation = -4338.891557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.59124 -41.33763 -40.02144 -39.28420 -37.91407 -37.46460 -35.71352 -34.93105 -33.75931 -32.57538 -31.02245 -30.21565 -28.72842 -27.49449 -26.30407 -25.14139 -24.84792 -23.08572 -22.51942 -22.12043 -21.47753 -20.38467 -19.58552 -19.27686 -18.84737 -18.07902 -17.76266 -17.29655 -17.17013 -16.84218 -16.35995 -16.08636 -15.86940 -15.71358 -15.47317 -15.33039 -14.98330 -14.80232 -14.51332 -14.25336 -13.90369 -13.71314 -13.43138 -13.41892 -13.14941 -12.96550 -12.68314 -12.57084 -12.44386 -12.29190 -12.16668 -12.07123 -11.86320 -11.49515 -11.36729 -10.76345 -10.56499 -10.46274 -10.28026 -10.05527 -9.70488 -8.93642 -7.78107 -5.24736 -0.55710 -0.40637 0.94936 1.36208 1.49155 1.52330 1.58405 1.71394 1.84541 2.43721 2.48578 2.65005 2.77563 3.06622 3.32569 3.43802 3.52567 3.62402 3.66899 3.73830 3.86393 4.02792 4.07946 4.13699 4.41441 4.48523 4.51354 4.66342 4.72334 4.78085 4.80841 4.90336 4.94900 4.96963 5.16383 5.32805 5.42714 5.47918 5.66948 5.72409 6.22767 6.34445 6.35513 6.40929 6.44948 6.63049 7.07544 7.11566 7.72633 8.34667 9.22983 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.002233 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.720080 B =12534.962393 C =13290.433757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.077 3.923 4 H 0.095 0.905 5 C 0.144 3.856 6 N -0.619 5.619 7 C -0.241 4.241 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.946 5.946 11 Si 0.982 3.018 12 H -0.283 1.283 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.130 3.870 16 C 0.156 3.844 17 H 0.084 0.916 18 N -0.693 5.693 19 C 0.572 3.428 20 O -0.571 6.571 21 C -0.191 4.191 22 C 0.187 3.813 23 N -0.482 5.482 24 C 0.264 3.736 25 N -0.570 5.570 26 H 0.446 0.554 27 C 0.488 3.512 28 O -0.432 6.432 29 N -0.508 5.508 30 C -0.010 4.010 31 C 0.039 3.961 32 H 0.033 0.967 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.088 0.912 36 H -0.012 1.012 37 H 0.250 0.750 38 H 0.017 0.983 39 H 0.044 0.956 40 H 0.416 0.584 41 H 0.204 0.796 42 H 0.441 0.559 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -5.067 27.897 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.113 0.887 5 C 0.018 3.982 6 N -0.347 5.347 7 C -0.370 4.370 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.810 3.190 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.199 1.199 15 C 0.003 3.997 16 C 0.050 3.950 17 H 0.102 0.898 18 N -0.345 5.345 19 C 0.360 3.640 20 O -0.450 6.450 21 C -0.199 4.199 22 C 0.018 3.982 23 N -0.195 5.195 24 C 0.027 3.973 25 N -0.199 5.199 26 H 0.290 0.710 27 C 0.182 3.818 28 O -0.238 6.238 29 N -0.240 5.240 30 C -0.130 4.130 31 C 0.011 3.989 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.006 0.994 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.062 0.938 40 H 0.255 0.745 41 H 0.221 0.779 42 H 0.305 0.695 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.212 -5.015 27.728 28.203 hybrid contribution -0.491 0.565 -0.689 1.018 sum -1.704 -4.450 27.038 27.455 Atomic orbital electron populations 1.22976 0.79304 1.03837 1.00817 1.87838 1.21691 1.26737 1.95001 1.23664 0.92660 0.84939 0.96972 0.88744 1.22108 0.93818 0.90237 0.92055 1.44541 1.32903 1.32826 1.24404 1.19393 1.11306 1.04786 1.01510 0.90062 1.25622 0.98089 1.01714 1.00043 1.69972 1.20615 1.39976 1.29002 0.85104 0.76914 0.78898 0.78095 1.20903 1.21771 1.19920 1.21692 0.94264 0.95348 0.88365 1.21677 0.95931 0.98075 0.79281 0.89813 1.45572 1.19559 1.63211 1.06121 1.18072 0.82383 0.77179 0.86370 1.90803 1.34456 1.45798 1.73979 1.20428 0.97986 1.08533 0.92975 1.23187 0.96276 0.90631 0.88122 1.66515 1.26854 1.20492 1.05634 1.18894 0.93184 0.99368 0.85877 1.42965 1.17151 1.54083 1.05730 0.70983 1.20203 0.80447 0.93447 0.87740 1.84851 1.69993 1.45880 1.23120 1.70718 1.30547 1.25765 0.97011 1.19382 0.93257 1.06208 0.94115 1.20867 0.97738 0.91044 0.89240 0.94814 0.87980 0.91757 0.89379 0.99386 0.94065 0.96541 0.93788 0.74497 0.77921 0.69458 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.89 113.37 1.23 1.90 16 2 O -0.39 -13.28 10.52 -148.98 -1.57 -14.85 16 3 C 0.08 2.77 3.11 32.08 0.10 2.87 16 4 H 0.09 2.89 7.76 -2.39 -0.02 2.87 16 5 C 0.14 7.00 5.63 86.86 0.49 7.49 16 6 N -0.62 -31.86 3.39 -691.97 -2.35 -34.21 16 7 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 10 N -0.95 -55.03 10.09 21.65 0.22 -54.81 16 11 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.13 5.56 6.98 86.73 0.61 6.16 16 16 C 0.16 5.60 2.99 46.27 0.14 5.73 16 17 H 0.08 3.40 7.70 -2.39 -0.02 3.38 16 18 N -0.69 -18.33 5.09 -439.53 -2.24 -20.56 16 19 C 0.57 16.48 7.77 86.74 0.67 17.15 16 20 O -0.57 -21.48 16.13 -3.94 -0.06 -21.55 16 21 C -0.19 -4.34 5.89 -20.01 -0.12 -4.46 16 22 C 0.19 3.24 10.69 85.15 0.91 4.15 16 23 N -0.48 -9.01 10.36 -191.62 -1.99 -10.99 16 24 C 0.26 5.04 8.45 133.83 1.13 6.17 16 25 N -0.57 -6.90 6.23 -306.99 -1.91 -8.81 16 26 H 0.45 2.26 8.96 -92.71 -0.83 1.43 16 27 C 0.49 6.86 9.39 179.72 1.69 8.55 16 28 O -0.43 -2.96 13.63 -85.56 -1.17 -4.13 16 29 N -0.51 -11.13 11.32 -306.40 -3.47 -14.59 16 30 C -0.01 -0.23 7.22 39.42 0.28 0.05 16 31 C 0.04 0.94 9.75 22.92 0.22 1.17 16 32 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 35 H 0.09 4.73 5.87 -2.39 -0.01 4.72 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 40 H 0.42 7.64 6.56 -92.71 -0.61 7.03 16 41 H 0.20 2.06 6.39 -2.91 -0.02 2.04 16 42 H 0.44 -2.15 9.06 -74.06 -0.67 -2.82 16 43 H 0.15 3.82 7.72 -2.91 -0.02 3.80 16 Total: -1.00 -81.11 367.02 -4.80 -85.92 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.99 Total: 10.13 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 8.69 Total: 41.36 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -11.73 Total: -143.99 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -2.80 Total: -40.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -81.11 -4.80 -85.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081877031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.435 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds