Wall clock time and date at job start Wed Apr 1 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99950 * 2 1 4 4 H 1.09001 * 110.78093 * 26.77086 * 3 2 1 5 5 C 1.54321 * 110.72512 * 263.52551 * 3 2 1 6 6 N 1.47018 * 107.27441 * 219.44684 * 5 3 2 7 7 C 1.36937 * 125.64969 * 178.89254 * 6 5 3 8 8 H 1.08005 * 120.00068 * 180.02562 * 7 6 5 9 9 C 1.38810 * 119.99893 * 0.02739 * 7 6 5 10 10 N 1.31617 * 120.00264 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47311 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47490 * 209.99887 * 11 9 7 14 14 H 1.48507 * 109.47367 * 329.99968 * 11 9 7 15 15 C 1.47428 * 108.70443 * 358.93949 * 6 5 3 16 16 C 1.54916 * 104.82921 * 24.13113 * 15 6 5 17 17 H 1.08996 * 111.03723 * 81.07650 * 16 15 6 18 18 N 1.46499 * 111.00189 * 204.92141 * 16 15 6 19 19 C 1.34781 * 119.99300 * 267.19678 * 18 16 15 20 20 O 1.21634 * 120.00552 * 359.97438 * 19 18 16 21 21 C 1.47207 * 119.99846 * 180.02562 * 19 18 16 22 22 C 1.38845 * 120.89793 * 359.97438 * 21 19 18 23 23 C 1.39942 * 119.43012 * 180.02562 * 22 21 19 24 24 C 1.35025 * 121.26628 * 0.02562 * 23 22 21 25 25 N 1.36256 * 121.58205 * 359.96059 * 24 23 22 26 26 C 1.36362 * 133.87797 * 180.02562 * 25 24 23 27 27 O 1.35713 * 126.33421 * 0.03696 * 26 25 24 28 28 N 1.31098 * 107.33516 * 180.02562 * 26 25 24 29 29 N 1.28703 * 110.31008 * 359.97438 * 28 26 25 30 30 C 1.31475 * 109.67006 * 359.97438 * 29 28 26 31 31 H 1.09011 * 109.46703 * 299.99386 * 1 2 3 32 32 H 1.08997 * 109.47537 * 59.98945 * 1 2 3 33 33 H 1.08995 * 109.47102 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.87984 * 338.86374 * 5 3 2 35 35 H 1.08997 * 109.88332 * 100.02436 * 5 3 2 36 36 H 0.97002 * 120.00406 * 180.02562 * 10 9 7 37 37 H 1.08994 * 110.36589 * 265.29321 * 15 6 5 38 38 H 1.09001 * 110.36373 * 142.96497 * 15 6 5 39 39 H 0.96993 * 120.00549 * 87.18800 * 18 16 15 40 40 H 1.07999 * 120.28718 * 359.74163 * 22 21 19 41 41 H 1.07993 * 119.36666 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.20321 * 180.02562 * 24 23 22 43 43 H 0.96700 * 114.00726 * 270.00035 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3363 2.0288 0.4590 5 6 2.3810 1.7381 -1.4341 6 7 3.6684 2.4439 -1.3581 7 6 4.3547 2.9691 -2.4204 8 1 5.2973 3.4712 -2.2594 9 6 3.8388 2.8562 -3.7041 10 7 2.6904 2.2439 -3.9004 11 14 4.7746 3.5731 -5.1531 12 1 5.6985 2.5481 -5.7019 13 1 3.8138 3.9880 -6.2065 14 1 5.5557 4.7533 -4.7030 15 6 4.0989 2.4918 0.0512 16 6 3.3817 1.2956 0.7256 17 1 3.9156 0.3638 0.5393 18 7 3.2169 1.5249 2.1631 19 6 4.1465 1.0736 3.0283 20 8 5.1220 0.4756 2.6158 21 6 3.9807 1.3035 4.4729 22 6 2.8743 1.9833 4.9642 23 6 2.7478 2.1852 6.3432 24 6 3.6819 1.7317 7.2064 25 7 4.7854 1.0589 6.7751 26 6 5.8595 0.5027 7.4048 27 8 6.0921 0.4944 8.7418 28 7 6.6257 -0.0226 6.4798 29 7 6.1108 0.1626 5.3149 30 6 4.9786 0.8208 5.4311 31 1 -0.3633 0.5138 0.8902 32 1 -0.3634 0.5140 -0.8898 33 1 -0.3633 -1.0276 -0.0005 34 1 2.4767 0.8603 -2.0731 35 1 1.6152 2.4053 -1.8297 36 1 2.3301 2.1647 -4.7975 37 1 3.7872 3.4293 0.5113 38 1 5.1802 2.3744 0.1217 39 1 2.4388 2.0016 2.4921 40 1 2.1200 2.3572 4.2877 41 1 1.8871 2.7144 6.7243 42 1 3.5506 1.9057 8.2642 43 1 6.5971 1.2560 9.0581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082323768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:28 Heat of formation + Delta-G solvation = 48.814970 kcal Electronic energy + Delta-G solvation = -30202.553551 eV Core-core repulsion = 25866.450109 eV Total energy + Delta-G solvation = -4336.103442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.85295 -39.94579 -38.58428 -38.08725 -37.96404 -35.92673 -34.39710 -33.81998 -31.84905 -31.42992 -29.49682 -28.69861 -27.21378 -26.13877 -25.42443 -24.23570 -23.77775 -23.13237 -21.34063 -20.59293 -20.19705 -19.54114 -18.50957 -17.75323 -17.65268 -17.10332 -16.63403 -16.38235 -15.89948 -15.46775 -15.22949 -15.02080 -14.60382 -14.52101 -14.25533 -14.10439 -13.39300 -13.24375 -13.14887 -12.99109 -12.79265 -12.68600 -12.28565 -12.05537 -11.90478 -11.67283 -11.34463 -11.24505 -11.01995 -10.80186 -10.76328 -10.73328 -10.17003 -10.03870 -10.00133 -9.89285 -9.79370 -9.19486 -8.80967 -8.61638 -8.50487 -6.89520 -5.73537 -3.08503 -0.24309 0.56239 1.41069 2.14390 2.42739 2.99015 3.20774 3.33745 3.41722 3.46940 3.48114 3.57679 3.81742 4.09651 4.12981 4.24469 4.45324 4.53129 4.89225 4.98837 5.09926 5.24466 5.30710 5.34589 5.40379 5.47621 5.53889 5.61226 5.62297 5.68639 5.81990 5.89463 6.03070 6.05741 6.12077 6.45033 6.62223 6.77492 6.80617 7.23600 7.46308 7.53979 7.70582 7.85385 8.16775 8.19342 8.26976 9.17386 9.77412 10.39916 11.37917 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002508 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.144370 B =11161.239448 C =12093.980800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.133 3.867 17 H 0.111 0.889 18 N -0.708 5.708 19 C 0.557 3.443 20 O -0.495 6.495 21 C -0.074 4.074 22 C -0.047 4.047 23 C -0.142 4.142 24 C 0.088 3.912 25 N -0.408 5.408 26 C 0.313 3.687 27 O -0.428 6.428 28 N -0.238 5.238 29 N -0.234 5.234 30 C 0.232 3.768 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.393 0.607 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 2.664 25.949 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.129 0.871 18 N -0.360 5.360 19 C 0.342 3.658 20 O -0.368 6.368 21 C -0.081 4.081 22 C -0.072 4.072 23 C -0.164 4.164 24 C -0.035 4.035 25 N -0.101 5.101 26 C 0.013 3.987 27 O -0.226 6.226 28 N -0.088 5.088 29 N -0.080 5.080 30 C -0.020 4.020 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.228 0.772 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.190 0.810 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.887 0.709 24.987 25.470 hybrid contribution -1.131 1.983 0.348 2.309 sum -6.017 2.692 25.335 26.179 Atomic orbital electron populations 1.22711 0.81765 1.02099 0.99679 1.87932 1.19041 1.27472 1.95021 1.23856 0.92826 0.84111 0.99542 0.91898 1.21566 0.88249 0.97313 0.88926 1.44254 1.21356 1.66494 1.00653 1.19079 1.02333 1.29521 0.84672 0.90100 1.24815 0.97410 1.00694 0.97407 1.69931 1.19179 1.47277 1.20630 0.86079 0.78630 0.78605 0.82196 1.21453 1.21699 1.20644 1.21835 0.97976 0.93669 0.86244 1.22495 0.96654 1.01487 0.76556 0.87082 1.45767 1.24532 1.58437 1.07285 1.17413 0.83847 0.80415 0.84164 1.90945 1.28637 1.38877 1.78373 1.20284 0.93119 1.01800 0.92912 1.21853 0.95590 0.93772 0.95956 1.20803 1.00082 1.02877 0.92638 1.21743 0.85727 0.94546 1.01457 1.44095 1.17975 1.38308 1.09732 1.21814 0.87187 1.02769 0.86892 1.85019 1.76169 1.49136 1.12316 1.74768 1.21709 1.17611 0.94686 1.75086 1.04944 1.15098 1.12827 1.22599 0.96978 1.01635 0.80752 0.94901 0.93621 0.90232 0.91871 0.93294 0.93651 0.95874 0.92950 0.77201 0.82645 0.81843 0.81028 0.73821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.69 10.43 -35.23 -0.37 -7.06 16 3 C 0.06 1.00 3.09 -24.89 -0.08 0.93 16 4 H 0.06 0.95 7.69 -51.93 -0.40 0.55 16 5 C 0.16 3.90 5.15 -3.07 -0.02 3.89 16 6 N -0.60 -15.18 3.39 -170.07 -0.58 -15.75 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 10 N -0.92 -26.78 10.31 55.49 0.57 -26.20 16 11 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.71 6.93 -2.52 -0.02 2.69 16 16 C 0.13 2.41 3.15 -65.77 -0.21 2.21 16 17 H 0.11 2.36 7.54 -51.93 -0.39 1.97 16 18 N -0.71 -9.72 5.15 -52.86 -0.27 -9.99 16 19 C 0.56 8.62 7.77 -12.62 -0.10 8.52 16 20 O -0.49 -10.12 15.92 5.25 0.08 -10.03 16 21 C -0.07 -0.88 6.06 -102.69 -0.62 -1.50 16 22 C -0.05 -0.31 9.63 -38.72 -0.37 -0.68 16 23 C -0.14 -0.58 9.91 -40.09 -0.40 -0.98 16 24 C 0.09 0.47 10.94 -16.73 -0.18 0.29 16 25 N -0.41 -4.13 2.97 -62.52 -0.19 -4.32 16 26 C 0.31 3.50 9.41 -88.66 -0.83 2.67 16 27 O -0.43 -3.08 13.65 -18.84 -0.26 -3.34 16 28 N -0.24 -3.66 12.20 29.70 0.36 -3.29 16 29 N -0.23 -4.05 11.76 32.37 0.38 -3.67 16 30 C 0.23 3.23 7.75 -153.91 -1.19 2.04 16 31 H 0.03 0.35 8.12 -51.92 -0.42 -0.07 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.72 7.29 -51.93 -0.38 1.34 16 35 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 3.78 6.66 -40.82 -0.27 3.50 16 40 H 0.16 0.55 6.48 -52.49 -0.34 0.21 16 41 H 0.16 0.03 8.06 -52.49 -0.42 -0.39 16 42 H 0.17 0.28 8.06 -52.49 -0.42 -0.15 16 43 H 0.40 0.64 9.06 45.56 0.41 1.05 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -39.57 368.22 -7.17 -46.74 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.26 Total: -0.55 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -3.17 Total: 14.83 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.28 Total: -63.23 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.54 Total: -20.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.57 -7.17 -46.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082323768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.552 kcal (2) G-P(sol) polarization free energy of solvation -39.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds