Wall clock time and date at job start Wed Apr 1 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99950 * 2 1 4 4 H 1.09001 * 110.78093 * 26.77086 * 3 2 1 5 5 C 1.54321 * 110.72512 * 263.52551 * 3 2 1 6 6 N 1.47018 * 107.27441 * 219.44684 * 5 3 2 7 7 C 1.36937 * 125.64969 * 178.89254 * 6 5 3 8 8 H 1.08005 * 120.00068 * 180.02562 * 7 6 5 9 9 C 1.38810 * 119.99893 * 0.02739 * 7 6 5 10 10 N 1.31617 * 120.00264 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47311 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47490 * 209.99887 * 11 9 7 14 14 H 1.48507 * 109.47367 * 329.99968 * 11 9 7 15 15 C 1.47428 * 108.70443 * 358.93949 * 6 5 3 16 16 C 1.54916 * 104.82921 * 24.13113 * 15 6 5 17 17 H 1.08996 * 111.03723 * 81.07650 * 16 15 6 18 18 N 1.46499 * 111.00189 * 204.92141 * 16 15 6 19 19 C 1.34781 * 119.99300 * 267.19678 * 18 16 15 20 20 O 1.21634 * 120.00552 * 359.97438 * 19 18 16 21 21 C 1.47207 * 119.99846 * 180.02562 * 19 18 16 22 22 C 1.38845 * 120.89793 * 359.97438 * 21 19 18 23 23 C 1.39942 * 119.43012 * 180.02562 * 22 21 19 24 24 C 1.35025 * 121.26628 * 0.02562 * 23 22 21 25 25 N 1.36256 * 121.58205 * 359.96059 * 24 23 22 26 26 C 1.36362 * 133.87797 * 180.02562 * 25 24 23 27 27 O 1.35713 * 126.33421 * 0.03696 * 26 25 24 28 28 N 1.31098 * 107.33516 * 180.02562 * 26 25 24 29 29 N 1.28703 * 110.31008 * 359.97438 * 28 26 25 30 30 C 1.31475 * 109.67006 * 359.97438 * 29 28 26 31 31 H 1.09011 * 109.46703 * 299.99386 * 1 2 3 32 32 H 1.08997 * 109.47537 * 59.98945 * 1 2 3 33 33 H 1.08995 * 109.47102 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.87984 * 338.86374 * 5 3 2 35 35 H 1.08997 * 109.88332 * 100.02436 * 5 3 2 36 36 H 0.97002 * 120.00406 * 180.02562 * 10 9 7 37 37 H 1.08994 * 110.36589 * 265.29321 * 15 6 5 38 38 H 1.09001 * 110.36373 * 142.96497 * 15 6 5 39 39 H 0.96993 * 120.00549 * 87.18800 * 18 16 15 40 40 H 1.07999 * 120.28718 * 359.74163 * 22 21 19 41 41 H 1.07993 * 119.36666 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.20321 * 180.02562 * 24 23 22 43 43 H 0.96700 * 114.00726 * 270.00035 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3363 2.0288 0.4590 5 6 2.3810 1.7381 -1.4341 6 7 3.6684 2.4439 -1.3581 7 6 4.3547 2.9691 -2.4204 8 1 5.2973 3.4712 -2.2594 9 6 3.8388 2.8562 -3.7041 10 7 2.6904 2.2439 -3.9004 11 14 4.7746 3.5731 -5.1531 12 1 5.6985 2.5481 -5.7019 13 1 3.8138 3.9880 -6.2065 14 1 5.5557 4.7533 -4.7030 15 6 4.0989 2.4918 0.0512 16 6 3.3817 1.2956 0.7256 17 1 3.9156 0.3638 0.5393 18 7 3.2169 1.5249 2.1631 19 6 4.1465 1.0736 3.0283 20 8 5.1220 0.4756 2.6158 21 6 3.9807 1.3035 4.4729 22 6 2.8743 1.9833 4.9642 23 6 2.7478 2.1852 6.3432 24 6 3.6819 1.7317 7.2064 25 7 4.7854 1.0589 6.7751 26 6 5.8595 0.5027 7.4048 27 8 6.0921 0.4944 8.7418 28 7 6.6257 -0.0226 6.4798 29 7 6.1108 0.1626 5.3149 30 6 4.9786 0.8208 5.4311 31 1 -0.3633 0.5138 0.8902 32 1 -0.3634 0.5140 -0.8898 33 1 -0.3633 -1.0276 -0.0005 34 1 2.4767 0.8603 -2.0731 35 1 1.6152 2.4053 -1.8297 36 1 2.3301 2.1647 -4.7975 37 1 3.7872 3.4293 0.5113 38 1 5.1802 2.3744 0.1217 39 1 2.4388 2.0016 2.4921 40 1 2.1200 2.3572 4.2877 41 1 1.8871 2.7144 6.7243 42 1 3.5506 1.9057 8.2642 43 1 6.5971 1.2560 9.0581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082323768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:27 Heat of formation + Delta-G solvation = 13.406350 kcal Electronic energy + Delta-G solvation = -30204.088984 eV Core-core repulsion = 25866.450109 eV Total energy + Delta-G solvation = -4337.638875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.64757 -41.17160 -39.73201 -38.96599 -38.73291 -37.47848 -35.72512 -34.83034 -33.58640 -32.20351 -30.73886 -30.04387 -28.77541 -27.48315 -26.46559 -25.68174 -24.54023 -24.05720 -22.51587 -22.11509 -21.73757 -20.37984 -19.30044 -19.08887 -18.53034 -18.28047 -17.83315 -17.54154 -17.11396 -16.49049 -16.26567 -16.07321 -15.93581 -15.76395 -15.63081 -15.34766 -15.01348 -14.50755 -14.14885 -13.96222 -13.72173 -13.69506 -13.58537 -13.23494 -13.20400 -12.98802 -12.89661 -12.74739 -12.55793 -12.28751 -12.11472 -12.05764 -11.85190 -11.61702 -11.55562 -11.13188 -10.76191 -10.73795 -10.59051 -10.13196 -9.25902 -8.94519 -7.86408 -5.23979 -0.86893 -0.08157 0.69546 1.40377 1.45989 1.49118 1.56580 1.57318 1.89343 2.40665 2.47974 2.54449 2.80745 2.98984 3.14670 3.33074 3.50623 3.55514 3.74811 3.76048 3.88972 3.94974 4.11271 4.30908 4.39797 4.45413 4.48893 4.63756 4.69252 4.69733 4.74878 4.86046 4.87011 4.92876 4.99757 5.15218 5.34147 5.39399 5.45865 5.58543 5.68858 6.15582 6.30636 6.37067 6.48731 7.06654 7.19565 7.31430 7.71545 8.33529 9.22952 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002508 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.144370 B =11161.239448 C =12093.980800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.079 3.921 4 H 0.108 0.892 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.245 4.245 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.979 3.021 12 H -0.291 1.291 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.151 3.849 17 H 0.071 0.929 18 N -0.688 5.688 19 C 0.559 3.441 20 O -0.563 6.563 21 C -0.136 4.136 22 C 0.010 3.990 23 C -0.135 4.135 24 C 0.095 3.905 25 N -0.407 5.407 26 C 0.329 3.671 27 O -0.421 6.421 28 N -0.292 5.292 29 N -0.313 5.313 30 C 0.225 3.775 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.014 0.986 35 H 0.027 0.973 36 H 0.249 0.751 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.418 0.582 40 H 0.196 0.804 41 H 0.223 0.777 42 H 0.220 0.780 43 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 5.261 29.906 32.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.020 3.980 4 H 0.126 0.874 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.807 3.193 12 H -0.218 1.218 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.004 3.996 16 C 0.044 3.956 17 H 0.089 0.911 18 N -0.342 5.342 19 C 0.347 3.653 20 O -0.441 6.441 21 C -0.144 4.144 22 C -0.014 4.014 23 C -0.156 4.156 24 C -0.025 4.025 25 N -0.099 5.099 26 C 0.027 3.973 27 O -0.223 6.223 28 N -0.140 5.140 29 N -0.157 5.157 30 C -0.029 4.029 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.258 0.742 40 H 0.213 0.787 41 H 0.240 0.760 42 H 0.237 0.763 43 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -8.303 3.344 29.018 30.367 hybrid contribution -0.213 1.239 -0.637 1.409 sum -8.515 4.583 28.381 29.983 Atomic orbital electron populations 1.23010 0.79185 1.03800 1.01058 1.87920 1.21925 1.27133 1.94915 1.23508 0.93417 0.85414 0.95656 0.87419 1.21315 0.87158 0.94652 0.92115 1.44520 1.22051 1.66408 1.01986 1.19434 1.02634 1.29414 0.85934 0.90083 1.25642 0.98457 1.01500 0.99889 1.70148 1.20474 1.48395 1.20657 0.85074 0.77330 0.78065 0.78817 1.21782 1.21528 1.19203 1.21946 0.97073 0.95929 0.84641 1.21852 0.96082 0.98444 0.79233 0.91109 1.45341 1.25335 1.58531 1.04943 1.17993 0.82624 0.78743 0.85946 1.90912 1.31421 1.42004 1.79794 1.19857 0.96270 1.08085 0.90180 1.22521 0.92749 0.87989 0.98141 1.21523 1.01144 1.02048 0.90859 1.22895 0.83602 0.91742 1.04290 1.44209 1.18963 1.38606 1.08164 1.21726 0.86801 1.01140 0.87593 1.84997 1.76649 1.50933 1.09767 1.74548 1.23954 1.20132 0.95367 1.74920 1.07812 1.18734 1.14231 1.22832 0.96433 1.00896 0.82749 0.90997 0.94599 0.88574 0.96804 0.95508 0.94199 0.93057 0.95196 0.74230 0.78743 0.76021 0.76334 0.70765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.85 113.37 1.23 1.84 16 2 O -0.40 -14.00 10.43 -148.98 -1.55 -15.55 16 3 C 0.08 2.80 3.09 31.78 0.10 2.90 16 4 H 0.11 2.85 7.69 -2.39 -0.02 2.83 16 5 C 0.17 8.52 5.15 86.73 0.45 8.96 16 6 N -0.62 -32.63 3.39 -691.99 -2.35 -34.98 16 7 C -0.25 -14.11 10.28 84.03 0.86 -13.25 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 10 N -0.95 -57.19 10.31 21.65 0.22 -56.97 16 11 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.13 5.57 6.93 86.86 0.60 6.17 16 16 C 0.15 5.57 3.15 46.39 0.15 5.71 16 17 H 0.07 3.23 7.54 -2.39 -0.02 3.21 16 18 N -0.69 -17.92 5.15 -439.39 -2.26 -20.19 16 19 C 0.56 17.59 7.77 86.60 0.67 18.27 16 20 O -0.56 -25.04 15.92 -4.14 -0.07 -25.11 16 21 C -0.14 -3.05 6.06 -18.61 -0.11 -3.17 16 22 C 0.01 0.08 9.63 22.83 0.22 0.30 16 23 C -0.14 -0.11 9.91 21.94 0.22 0.11 16 24 C 0.10 0.48 10.94 83.27 0.91 1.39 16 25 N -0.41 -7.31 2.97 -462.37 -1.37 -8.69 16 26 C 0.33 7.12 9.41 179.66 1.69 8.81 16 27 O -0.42 -5.08 13.65 -90.34 -1.23 -6.31 16 28 N -0.29 -9.55 12.20 -173.37 -2.12 -11.66 16 29 N -0.31 -11.71 11.76 -51.51 -0.61 -12.31 16 30 C 0.22 6.31 7.75 135.67 1.05 7.36 16 31 H 0.07 1.20 8.12 -2.38 -0.02 1.18 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.01 0.80 7.29 -2.39 -0.02 0.78 16 35 H 0.03 1.41 7.51 -2.39 -0.02 1.39 16 36 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.42 6.23 6.66 -92.71 -0.62 5.61 16 40 H 0.20 -0.12 6.48 -2.91 -0.02 -0.14 16 41 H 0.22 -2.21 8.06 -2.91 -0.02 -2.24 16 42 H 0.22 -0.99 8.06 -2.91 -0.02 -1.01 16 43 H 0.43 0.13 9.06 -74.06 -0.67 -0.55 16 Total: -1.00 -101.69 368.22 -1.00 -102.69 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -0.20 Total: -1.82 kcal Atomic # 6 Polarization: 33.81 SS G_CDS: 8.50 Total: 42.31 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -8.48 Total: -144.80 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.85 Total: -46.98 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -101.69 -1.00 -102.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082323768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.097 kcal (2) G-P(sol) polarization free energy of solvation -101.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds