Wall clock time and date at job start Wed Apr 1 2020 04:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35725 * 116.99821 * 2 1 4 4 C 1.40445 * 119.68405 * 180.02562 * 3 2 1 5 5 C 1.36130 * 120.05630 * 179.62284 * 4 3 2 6 6 C 1.40738 * 119.29928 * 0.56889 * 5 4 3 7 7 N 1.33197 * 132.16591 * 179.27068 * 6 5 4 8 8 C 1.32248 * 109.70478 * 180.02562 * 7 6 5 9 9 C 1.38778 * 108.13187 * 0.02562 * 8 7 6 10 10 C 1.46186 * 126.76154 * 179.97438 * 9 8 7 11 11 O 1.21753 * 119.99854 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99815 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.91614 * 37.44430 * 13 12 10 15 15 C 1.54917 * 111.00214 * 273.54250 * 13 12 10 16 16 N 1.47422 * 104.83074 * 204.91534 * 15 13 12 17 17 C 1.36938 * 125.64571 * 204.09198 * 16 15 13 18 18 H 1.07994 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47043 * 90.00332 * 21 19 17 23 23 H 1.48496 * 109.46910 * 210.00251 * 21 19 17 24 24 H 1.48497 * 109.47083 * 330.00433 * 21 19 17 25 25 C 1.47020 * 108.70191 * 24.12901 * 16 15 13 26 26 C 1.54316 * 107.27568 * 358.94070 * 25 16 15 27 27 H 1.08993 * 110.87674 * 219.37383 * 26 25 16 28 28 O 1.42895 * 110.72109 * 96.16723 * 26 25 16 29 29 N 1.36474 * 119.18600 * 359.57866 * 6 5 4 30 30 N 1.31209 * 119.68760 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46790 * 300.00327 * 1 2 3 33 33 H 1.09000 * 109.47007 * 60.00347 * 1 2 3 34 34 H 1.08000 * 119.97270 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.34907 * 179.85876 * 5 4 3 36 36 H 1.07994 * 125.93446 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00218 * 359.97438 * 12 10 9 38 38 H 1.08998 * 110.36726 * 323.75547 * 15 13 12 39 39 H 1.09005 * 110.36534 * 86.08069 * 15 13 12 40 40 H 0.97006 * 120.00279 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88493 * 239.51822 * 25 16 15 42 42 H 1.09005 * 110.00581 * 118.43132 * 25 16 15 43 43 H 0.96695 * 114.00110 * 66.47974 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4481 1.2751 -0.0005 5 6 4.0740 2.4840 -0.0083 6 6 3.3007 3.6599 -0.0035 7 7 3.6344 4.9494 0.0037 8 6 2.5407 5.6930 0.0062 9 6 1.4420 4.8452 0.0009 10 6 0.0339 5.2378 0.0019 11 8 -0.2693 6.4170 0.0074 12 7 -0.9287 4.2945 -0.0033 13 6 -2.3399 4.6880 -0.0029 14 1 -2.4970 5.5740 -0.6180 15 6 -2.8521 4.9167 1.4412 16 7 -4.3073 4.6936 1.3651 17 6 -5.2398 5.2091 2.2254 18 1 -4.9280 5.8393 3.0452 19 6 -6.5857 4.9224 2.0432 20 7 -6.9656 4.1547 1.0438 21 14 -7.8576 5.6249 3.2172 22 1 -8.3247 6.9407 2.7113 23 1 -9.0104 4.6938 3.3129 24 1 -7.2487 5.7988 4.5604 25 6 -4.5916 3.8254 0.2132 26 6 -3.2438 3.5175 -0.4723 27 1 -3.3495 3.5231 -1.5571 28 8 -2.7227 2.2650 -0.0234 29 7 1.9395 3.5614 0.0000 30 7 1.3246 2.3058 -0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0309 0.3659 -0.0014 35 1 5.1525 2.5402 -0.0065 36 1 2.5082 6.7724 0.0115 37 1 -0.6871 3.3551 -0.0081 38 1 -2.3938 4.2013 2.1240 39 1 -2.6409 5.9370 1.7615 40 1 -7.9062 3.9547 0.9162 41 1 -5.2533 4.3393 -0.4840 42 1 -5.0563 2.8987 0.5503 43 1 -3.2513 1.5006 -0.2905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083581033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:34 Heat of formation + Delta-G solvation = 46.677340 kcal Electronic energy + Delta-G solvation = -31040.785835 eV Core-core repulsion = 26704.589698 eV Total energy + Delta-G solvation = -4336.196137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.85081 -40.19551 -39.46031 -37.87046 -37.05319 -34.89325 -34.37656 -33.72672 -31.70591 -31.00423 -30.07769 -28.52168 -27.89817 -27.05950 -24.94219 -24.33018 -23.69971 -22.44808 -20.95006 -20.44789 -20.01567 -19.03823 -18.94877 -17.38515 -17.03421 -16.96704 -16.81627 -16.47937 -15.88934 -15.38244 -15.20776 -14.82423 -14.62023 -14.42399 -14.17936 -14.05828 -13.97208 -13.74181 -13.17876 -12.91433 -12.77409 -12.63894 -12.35422 -12.25633 -11.71371 -11.51300 -11.32690 -11.07247 -10.96897 -10.84775 -10.55322 -10.49603 -10.40838 -10.17057 -9.91671 -9.83013 -9.44887 -9.37059 -8.81537 -8.67843 -8.48440 -6.89245 -5.76647 -3.09387 -0.04563 0.62201 1.24426 2.04000 2.49995 2.90039 3.23467 3.33664 3.39396 3.44522 3.46375 3.61910 3.65437 4.16788 4.45667 4.51275 4.60956 4.85319 4.87920 4.99372 5.02438 5.13506 5.17897 5.24438 5.33023 5.35397 5.38725 5.52428 5.61191 5.68499 5.84341 6.03372 6.15643 6.18898 6.48324 6.57108 6.66031 6.90543 7.08061 7.28819 7.31647 7.41740 7.70788 7.80010 7.99781 8.17622 8.37386 9.16368 9.76325 10.40739 11.35712 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003032 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.248720 B = 9231.442147 C =10471.721380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.286 6.286 3 C 0.354 3.646 4 C -0.168 4.168 5 C 0.018 3.982 6 C 0.162 3.838 7 N -0.458 5.458 8 C 0.101 3.899 9 C -0.047 4.047 10 C 0.589 3.411 11 O -0.529 6.529 12 N -0.698 5.698 13 C 0.138 3.862 14 H 0.105 0.895 15 C 0.133 3.867 16 N -0.600 5.600 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.927 5.927 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.156 3.844 26 C 0.069 3.931 27 H 0.061 0.939 28 O -0.566 6.566 29 N -0.223 5.223 30 N -0.333 5.333 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.205 0.795 37 H 0.414 0.586 38 H 0.024 0.976 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.057 -10.349 -6.004 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.186 6.186 3 C 0.146 3.854 4 C -0.194 4.194 5 C -0.008 4.008 6 C -0.083 4.083 7 N -0.178 5.178 8 C -0.061 4.061 9 C -0.168 4.168 10 C 0.374 3.626 11 O -0.406 6.406 12 N -0.351 5.351 13 C 0.032 3.968 14 H 0.123 0.877 15 C 0.005 3.995 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.030 3.970 26 C 0.009 3.991 27 H 0.079 0.921 28 O -0.372 6.372 29 N 0.003 4.997 30 N -0.169 5.169 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.222 0.778 37 H 0.253 0.747 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 20.877 -9.083 -5.702 23.470 hybrid contribution -1.418 -0.948 0.353 1.742 sum 19.459 -10.031 -5.349 22.536 Atomic orbital electron populations 1.23246 0.75023 1.04536 1.04174 1.86392 1.24596 1.21000 1.86652 1.20628 0.90706 0.85278 0.88837 1.20875 0.91345 1.00157 1.07014 1.20495 1.01493 0.86885 0.91908 1.21209 0.81918 0.95072 1.10071 1.70493 1.29176 0.98300 1.19848 1.23187 0.84552 1.00137 0.98214 1.21623 0.96591 0.79513 1.19106 1.16598 0.82514 0.86026 0.77474 1.90890 1.81909 1.16655 1.51112 1.45823 1.05810 1.10504 1.72924 1.22413 0.77869 0.96723 0.99759 0.87728 1.21823 0.86052 0.98753 0.92845 1.44272 0.99872 1.57099 1.31423 1.19105 0.86252 1.24189 1.05633 0.90231 1.24784 0.96902 1.00125 0.98686 1.69907 1.15135 1.41112 1.31366 0.86065 0.81060 0.78184 0.80165 1.21507 1.21696 1.20660 1.21843 0.89753 0.95979 0.89389 1.23507 0.95725 0.83123 0.96699 0.92099 1.86268 1.54490 1.15848 1.80606 1.46175 1.06474 1.03121 1.43921 1.75296 1.23574 0.88055 1.29985 0.87364 0.90710 0.91091 0.81574 0.80802 0.77833 0.74748 0.95803 0.93482 0.93746 0.92584 0.92869 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.38 101.05 1.05 1.24 16 2 O -0.29 -2.48 10.49 -18.88 -0.20 -2.68 16 3 C 0.35 3.44 7.60 -16.99 -0.13 3.31 16 4 C -0.17 -1.14 9.97 -39.51 -0.39 -1.53 16 5 C 0.02 0.14 10.10 -39.40 -0.40 -0.26 16 6 C 0.16 1.92 7.85 -156.13 -1.23 0.69 16 7 N -0.46 -5.89 11.25 -12.23 -0.14 -6.03 16 8 C 0.10 1.34 11.69 -17.17 -0.20 1.14 16 9 C -0.05 -0.71 7.10 -81.85 -0.58 -1.30 16 10 C 0.59 10.33 7.77 -13.07 -0.10 10.23 16 11 O -0.53 -10.52 16.65 5.14 0.09 -10.44 16 12 N -0.70 -12.09 5.18 -53.18 -0.28 -12.37 16 13 C 0.14 2.66 3.20 -65.78 -0.21 2.45 16 14 H 0.10 2.10 7.73 -51.93 -0.40 1.70 16 15 C 0.13 3.00 6.92 -2.53 -0.02 2.98 16 16 N -0.60 -15.51 3.39 -170.07 -0.58 -16.09 16 17 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.93 -26.65 10.31 55.49 0.57 -26.08 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.16 3.62 5.14 -3.07 -0.02 3.60 16 26 C 0.07 1.24 4.20 -24.90 -0.10 1.14 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 O -0.57 -8.69 12.13 -35.23 -0.43 -9.11 16 29 N -0.22 -3.04 4.04 -8.68 -0.04 -3.07 16 30 N -0.33 -4.16 8.87 30.56 0.27 -3.89 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.20 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.41 6.75 5.54 -40.82 -0.23 6.52 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 1.43 7.38 -51.93 -0.38 1.05 16 42 H 0.05 1.34 7.43 -51.93 -0.39 0.95 16 43 H 0.38 4.29 9.12 45.56 0.42 4.71 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -35.06 367.17 -7.12 -42.18 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.33 Total: 8.00 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: -2.58 Total: 16.86 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.18 Total: -67.52 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.54 Total: -22.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.06 -7.12 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083581033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.853 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds