Wall clock time and date at job start Wed Apr 1 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35725 * 116.99821 * 2 1 4 4 C 1.40445 * 119.68405 * 180.02562 * 3 2 1 5 5 C 1.36130 * 120.05630 * 179.62284 * 4 3 2 6 6 C 1.40738 * 119.29928 * 0.56889 * 5 4 3 7 7 N 1.33197 * 132.16591 * 179.27068 * 6 5 4 8 8 C 1.32248 * 109.70478 * 180.02562 * 7 6 5 9 9 C 1.38778 * 108.13187 * 0.02562 * 8 7 6 10 10 C 1.46186 * 126.76154 * 179.97438 * 9 8 7 11 11 O 1.21753 * 119.99854 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99815 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.91614 * 37.44430 * 13 12 10 15 15 C 1.54917 * 111.00214 * 273.54250 * 13 12 10 16 16 N 1.47422 * 104.83074 * 204.91534 * 15 13 12 17 17 C 1.36938 * 125.64571 * 204.09198 * 16 15 13 18 18 H 1.07994 * 120.00035 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47043 * 90.00332 * 21 19 17 23 23 H 1.48496 * 109.46910 * 210.00251 * 21 19 17 24 24 H 1.48497 * 109.47083 * 330.00433 * 21 19 17 25 25 C 1.47020 * 108.70191 * 24.12901 * 16 15 13 26 26 C 1.54316 * 107.27568 * 358.94070 * 25 16 15 27 27 H 1.08993 * 110.87674 * 219.37383 * 26 25 16 28 28 O 1.42895 * 110.72109 * 96.16723 * 26 25 16 29 29 N 1.36474 * 119.18600 * 359.57866 * 6 5 4 30 30 N 1.31209 * 119.68760 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46790 * 300.00327 * 1 2 3 33 33 H 1.09000 * 109.47007 * 60.00347 * 1 2 3 34 34 H 1.08000 * 119.97270 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.34907 * 179.85876 * 5 4 3 36 36 H 1.07994 * 125.93446 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00218 * 359.97438 * 12 10 9 38 38 H 1.08998 * 110.36726 * 323.75547 * 15 13 12 39 39 H 1.09005 * 110.36534 * 86.08069 * 15 13 12 40 40 H 0.97006 * 120.00279 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88493 * 239.51822 * 25 16 15 42 42 H 1.09005 * 110.00581 * 118.43132 * 25 16 15 43 43 H 0.96695 * 114.00110 * 66.47974 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4481 1.2751 -0.0005 5 6 4.0740 2.4840 -0.0083 6 6 3.3007 3.6599 -0.0035 7 7 3.6344 4.9494 0.0037 8 6 2.5407 5.6930 0.0062 9 6 1.4420 4.8452 0.0009 10 6 0.0339 5.2378 0.0019 11 8 -0.2693 6.4170 0.0074 12 7 -0.9287 4.2945 -0.0033 13 6 -2.3399 4.6880 -0.0029 14 1 -2.4970 5.5740 -0.6180 15 6 -2.8521 4.9167 1.4412 16 7 -4.3073 4.6936 1.3651 17 6 -5.2398 5.2091 2.2254 18 1 -4.9280 5.8393 3.0452 19 6 -6.5857 4.9224 2.0432 20 7 -6.9656 4.1547 1.0438 21 14 -7.8576 5.6249 3.2172 22 1 -8.3247 6.9407 2.7113 23 1 -9.0104 4.6938 3.3129 24 1 -7.2487 5.7988 4.5604 25 6 -4.5916 3.8254 0.2132 26 6 -3.2438 3.5175 -0.4723 27 1 -3.3495 3.5231 -1.5571 28 8 -2.7227 2.2650 -0.0234 29 7 1.9395 3.5614 0.0000 30 7 1.3246 2.3058 -0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0309 0.3659 -0.0014 35 1 5.1525 2.5402 -0.0065 36 1 2.5082 6.7724 0.0115 37 1 -0.6871 3.3551 -0.0081 38 1 -2.3938 4.2013 2.1240 39 1 -2.6409 5.9370 1.7615 40 1 -7.9062 3.9547 0.9162 41 1 -5.2533 4.3393 -0.4840 42 1 -5.0563 2.8987 0.5503 43 1 -3.2513 1.5006 -0.2905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083581033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:33 Heat of formation + Delta-G solvation = 17.139564 kcal Electronic energy + Delta-G solvation = -31042.066689 eV Core-core repulsion = 26704.589698 eV Total energy + Delta-G solvation = -4337.476991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.75942 -41.09425 -40.76064 -39.39189 -37.85367 -36.52021 -35.63635 -34.84790 -33.59225 -31.87763 -31.14354 -30.20266 -28.91207 -28.51124 -26.60544 -25.43403 -24.60401 -23.54983 -22.43599 -21.85259 -21.60453 -20.13775 -19.73027 -19.14522 -18.39446 -17.79892 -17.79426 -17.65457 -16.93178 -16.76450 -16.68222 -16.00587 -15.89323 -15.66344 -15.57577 -15.26378 -14.87479 -14.78460 -14.60038 -14.45509 -14.34502 -14.03609 -13.68385 -13.22724 -12.95547 -12.87086 -12.77388 -12.50974 -12.41296 -12.32854 -12.15081 -12.00409 -11.89859 -11.75006 -11.44153 -11.19003 -10.92854 -10.79272 -10.31570 -10.26518 -9.48075 -8.98436 -7.91210 -5.27269 -0.73040 -0.29835 0.36539 1.08117 1.44177 1.46218 1.54665 1.78512 1.94193 2.08294 2.11589 2.46374 2.76068 2.88353 3.12171 3.27783 3.51714 3.57429 3.72115 3.85880 3.89028 3.95058 4.08466 4.18599 4.30541 4.35398 4.36582 4.41620 4.50097 4.59486 4.73956 4.76620 4.77276 4.93019 4.94191 5.22728 5.29854 5.36691 5.43564 5.61683 5.76538 6.11140 6.22196 6.31695 6.49978 6.81053 7.03499 7.04602 7.66953 8.31122 9.18686 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.003032 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.248720 B = 9231.442147 C =10471.721380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.279 6.279 3 C 0.349 3.651 4 C -0.143 4.143 5 C 0.016 3.984 6 C 0.169 3.831 7 N -0.473 5.473 8 C 0.109 3.891 9 C -0.089 4.089 10 C 0.590 3.410 11 O -0.563 6.563 12 N -0.693 5.693 13 C 0.148 3.852 14 H 0.096 0.904 15 C 0.136 3.864 16 N -0.619 5.619 17 C -0.250 4.250 18 H 0.075 0.925 19 C -0.057 4.057 20 N -0.946 5.946 21 Si 0.981 3.019 22 H -0.285 1.285 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.163 3.837 26 C 0.094 3.906 27 H 0.093 0.907 28 O -0.562 6.562 29 N -0.232 5.232 30 N -0.366 5.366 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.212 0.788 35 H 0.217 0.783 36 H 0.218 0.782 37 H 0.420 0.580 38 H 0.016 0.984 39 H 0.030 0.970 40 H 0.250 0.750 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.359 -12.594 -6.331 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.179 6.179 3 C 0.142 3.858 4 C -0.169 4.169 5 C -0.010 4.010 6 C -0.077 4.077 7 N -0.193 5.193 8 C -0.053 4.053 9 C -0.208 4.208 10 C 0.377 3.623 11 O -0.443 6.443 12 N -0.345 5.345 13 C 0.042 3.958 14 H 0.114 0.886 15 C 0.009 3.991 16 N -0.346 5.346 17 C -0.379 4.379 18 H 0.093 0.907 19 C -0.251 4.251 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.212 1.212 23 H -0.214 1.214 24 H -0.198 1.198 25 C 0.038 3.962 26 C 0.034 3.966 27 H 0.110 0.890 28 O -0.371 6.371 29 N -0.005 5.005 30 N -0.204 5.204 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.234 0.766 36 H 0.234 0.766 37 H 0.260 0.740 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 23.199 -11.373 -6.037 26.533 hybrid contribution -2.028 -0.444 0.479 2.131 sum 21.170 -11.817 -5.558 24.874 Atomic orbital electron populations 1.23339 0.74690 1.06078 1.02969 1.86428 1.24926 1.20313 1.86273 1.21183 0.92143 0.84901 0.87602 1.21399 0.89982 1.01636 1.03856 1.21080 1.03183 0.85195 0.91529 1.22053 0.81770 0.96089 1.07837 1.70534 1.28767 0.98893 1.21136 1.23461 0.84277 1.00784 0.96816 1.21194 0.95373 0.80923 1.23347 1.16915 0.83589 0.85476 0.76326 1.90853 1.82765 1.17897 1.52740 1.45693 1.04803 1.10893 1.73148 1.22074 0.79408 0.97230 0.97125 0.88623 1.21800 0.84797 0.97430 0.95070 1.44532 1.00825 1.57482 1.31766 1.19405 0.87369 1.24731 1.06355 0.90693 1.25593 0.98531 1.00575 1.00373 1.70097 1.15202 1.41695 1.32431 0.85059 0.78347 0.77349 0.78421 1.21151 1.21415 1.19849 1.21700 0.92277 0.94002 0.88264 1.23120 0.92090 0.83762 0.97615 0.88970 1.86241 1.54446 1.15650 1.80757 1.46150 1.07062 1.03014 1.44231 1.75233 1.24890 0.88333 1.31902 0.84491 0.92562 0.91594 0.77096 0.76614 0.76555 0.73991 0.96580 0.95156 0.94031 0.95435 0.95157 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.38 113.37 1.18 1.50 16 2 O -0.28 -4.04 10.49 -90.47 -0.95 -4.99 16 3 C 0.35 5.83 7.60 85.32 0.65 6.48 16 4 C -0.14 -1.30 9.97 22.32 0.22 -1.08 16 5 C 0.02 0.17 10.10 22.39 0.23 0.40 16 6 C 0.17 3.66 7.85 134.06 1.05 4.72 16 7 N -0.47 -11.60 11.25 -192.60 -2.17 -13.77 16 8 C 0.11 2.90 11.69 84.76 0.99 3.89 16 9 C -0.09 -2.72 7.10 40.42 0.29 -2.43 16 10 C 0.59 21.39 7.77 86.31 0.67 22.06 16 11 O -0.56 -23.45 16.65 -4.52 -0.08 -23.52 16 12 N -0.69 -24.45 5.18 -440.35 -2.28 -26.73 16 13 C 0.15 5.85 3.20 46.39 0.15 5.99 16 14 H 0.10 3.97 7.73 -2.39 -0.02 3.95 16 15 C 0.14 6.41 6.92 86.86 0.60 7.01 16 16 N -0.62 -33.21 3.39 -691.99 -2.35 -35.56 16 17 C -0.25 -14.57 10.28 84.03 0.86 -13.71 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 20 N -0.95 -55.55 10.31 21.65 0.22 -55.32 16 21 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 C 0.16 7.79 5.14 86.73 0.45 8.23 16 26 C 0.09 3.37 4.20 31.78 0.13 3.50 16 27 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 28 O -0.56 -16.70 12.13 -148.98 -1.81 -18.50 16 29 N -0.23 -6.13 4.04 -181.37 -0.73 -6.86 16 30 N -0.37 -8.69 8.87 -170.59 -1.51 -10.20 16 31 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 33 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.21 0.02 8.06 -2.91 -0.02 -0.01 16 35 H 0.22 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.22 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.42 13.73 5.54 -92.71 -0.51 13.22 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 41 H 0.03 1.46 7.38 -2.39 -0.02 1.44 16 42 H 0.03 1.57 7.43 -2.38 -0.02 1.55 16 43 H 0.40 8.37 9.12 -74.06 -0.68 7.70 16 Total: -1.00 -79.80 367.17 -1.79 -81.59 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.10 Total: 21.83 kcal Atomic # 6 Polarization: 35.81 SS G_CDS: 7.93 Total: 43.74 kcal Atomic # 7 Polarization: -139.62 SS G_CDS: -8.82 Total: -148.44 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.83 Total: -47.02 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -79.80 -1.79 -81.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083581033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.733 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds