Wall clock time and date at job start Wed Apr 1 2020 04:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35372 * 117.00251 * 2 1 4 4 C 1.36085 * 125.58192 * 180.02562 * 3 2 1 5 5 C 1.39912 * 107.18117 * 179.97438 * 4 3 2 6 6 C 1.37828 * 106.67088 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.02890 * 179.97438 * 6 5 4 8 8 O 1.21774 * 120.00004 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00157 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.74884 * 95.24274 * 11 10 9 13 13 N 1.35316 * 106.17181 * 180.12613 * 12 11 10 14 14 C 1.46499 * 125.86841 * 179.90219 * 13 12 11 15 15 C 1.53504 * 114.20382 * 84.71602 * 14 13 12 16 16 N 1.47066 * 88.04678 * 220.37387 * 15 14 13 17 17 C 1.36941 * 136.05534 * 207.12355 * 16 15 14 18 18 H 1.07998 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99683 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00444 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47012 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47403 * 119.99440 * 21 19 17 24 24 H 1.48499 * 109.47359 * 239.99711 * 21 19 17 25 25 C 1.47064 * 87.88659 * 27.09306 * 16 15 14 26 26 N 1.28712 * 108.26333 * 359.64225 * 13 12 11 27 27 N 1.28630 * 110.18000 * 0.22465 * 26 13 12 28 28 O 1.34010 * 125.57456 * 0.26618 * 3 2 1 29 29 H 1.08997 * 109.47411 * 59.99893 * 1 2 3 30 30 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46739 * 299.99940 * 1 2 3 32 32 H 1.08002 * 126.41130 * 359.97343 * 4 3 2 33 33 H 1.07997 * 126.66493 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00017 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47322 * 59.99364 * 10 9 7 36 36 H 1.08998 * 109.46565 * 299.99467 * 10 9 7 37 37 H 1.07997 * 126.91327 * 0.02562 * 12 11 10 38 38 H 1.09002 * 113.41645 * 217.91422 * 14 13 12 39 39 H 1.09002 * 113.46865 * 105.56483 * 15 14 13 40 40 H 1.08999 * 113.46581 * 335.18259 * 15 14 13 41 41 H 0.96996 * 120.00248 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.47096 * 87.65665 * 25 16 15 43 43 H 1.09005 * 113.46966 * 218.04058 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5985 2.7925 -0.0009 6 6 2.3522 3.3810 -0.0012 7 6 2.0794 4.8166 -0.0012 8 8 3.0019 5.6116 -0.0013 9 7 0.8070 5.2608 -0.0010 10 6 0.5336 6.7001 -0.0015 11 6 -0.9560 6.9285 -0.0018 12 6 -1.7417 7.1495 1.0780 13 7 -3.0008 7.2955 0.6044 14 6 -4.1969 7.5508 1.4108 15 6 -4.4317 9.0324 1.7368 16 7 -4.8335 8.6191 3.0898 17 6 -5.6511 9.1148 4.0702 18 1 -6.1848 10.0402 3.9115 19 6 -5.7936 8.4279 5.2680 20 7 -5.1435 7.2999 5.4613 21 14 -6.9093 9.1037 6.6051 22 1 -7.5212 10.3756 6.1433 23 1 -7.9798 8.1180 6.9018 24 1 -6.1137 9.3552 7.8335 25 6 -3.9717 7.4387 2.9262 26 7 -2.9662 7.1770 -0.6767 27 7 -1.7612 6.9576 -1.0696 28 8 1.4265 2.3957 0.0051 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.1528 0.6453 -0.0006 33 1 4.5515 3.3006 -0.0017 34 1 0.0722 4.6276 -0.0013 35 1 0.9704 7.1527 -0.8917 36 1 0.9708 7.1532 0.8883 37 1 -1.4271 7.1978 2.1100 38 1 -5.0822 7.0268 1.0506 39 1 -5.2418 9.4804 1.1613 40 1 -3.5207 9.6305 1.7183 41 1 -5.2434 6.8197 6.2981 42 1 -2.9376 7.6116 3.2243 43 1 -4.3901 6.5318 3.3629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094329060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:18 Heat of formation + Delta-G solvation = 111.478443 kcal Electronic energy + Delta-G solvation = -29002.567916 eV Core-core repulsion = 24669.181766 eV Total energy + Delta-G solvation = -4333.386150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.15496 -43.06034 -39.68298 -38.83346 -38.59921 -35.43619 -33.61586 -33.41339 -32.10777 -31.47468 -29.95366 -28.10984 -27.86853 -26.52821 -25.11379 -24.52842 -23.04183 -22.31116 -22.02537 -21.15265 -20.63702 -19.76726 -19.28769 -18.19986 -17.42951 -17.38691 -16.85921 -16.32285 -15.91930 -15.67968 -15.60952 -15.17395 -15.01084 -14.79285 -14.55937 -14.10571 -13.59695 -13.43480 -13.33171 -13.26053 -13.08917 -13.03882 -12.59065 -12.39720 -12.16305 -11.97524 -11.89629 -11.44579 -11.26598 -11.03356 -10.93895 -10.67185 -10.46918 -10.36320 -10.28716 -9.91641 -9.54181 -9.36143 -9.20122 -9.11533 -8.41672 -7.31446 -6.10033 -3.45701 0.75392 1.72935 1.86067 2.03260 2.33881 2.56077 2.76191 2.97104 3.22679 3.27034 3.28923 3.31022 4.17735 4.27514 4.44110 4.56102 4.60323 4.65422 4.68072 4.78977 4.86988 4.93696 5.07752 5.14276 5.15719 5.28781 5.35963 5.42971 5.48990 5.53375 5.68068 5.95015 6.02311 6.04780 6.06880 6.08469 6.17767 6.22995 6.46786 6.70964 6.71723 6.96361 7.09574 7.23898 7.62349 7.86145 8.66863 8.69890 9.36211 10.17625 11.07521 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.002108 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.530751 B =13276.932638 C =14267.153012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.262 6.262 3 C 0.216 3.784 4 C -0.242 4.242 5 C -0.080 4.080 6 C -0.101 4.101 7 C 0.610 3.390 8 O -0.522 6.522 9 N -0.714 5.714 10 C 0.215 3.785 11 C -0.065 4.065 12 C -0.013 4.013 13 N -0.262 5.262 14 C 0.071 3.929 15 C 0.118 3.882 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.090 0.910 19 C -0.002 4.002 20 N -0.918 5.918 21 Si 0.921 3.079 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.156 3.844 26 N -0.086 5.086 27 N -0.266 5.266 28 O -0.189 6.189 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.406 0.594 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.192 0.808 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.259 0.741 42 H 0.040 0.960 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.804 -12.230 -9.919 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.176 6.176 3 C 0.119 3.881 4 C -0.262 4.262 5 C -0.100 4.100 6 C -0.152 4.152 7 C 0.397 3.603 8 O -0.401 6.401 9 N -0.365 5.365 10 C 0.091 3.909 11 C -0.204 4.204 12 C -0.167 4.167 13 N -0.054 5.054 14 C -0.032 4.032 15 C -0.010 4.010 16 N -0.321 5.321 17 C -0.353 4.353 18 H 0.108 0.892 19 C -0.199 4.199 20 N -0.563 5.563 21 Si 0.750 3.250 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.214 1.214 25 C 0.029 3.971 26 N -0.066 5.066 27 N -0.132 5.132 28 O -0.089 6.089 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.241 0.759 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.209 0.791 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.123 -11.718 -10.864 20.057 hybrid contribution -0.651 -0.056 1.887 1.997 sum 11.472 -11.773 -8.976 18.730 Atomic orbital electron populations 1.23215 0.76271 1.05173 1.02978 1.86410 1.23403 1.18772 1.89042 1.20831 0.89569 0.78224 0.99431 1.20787 0.92065 0.96960 1.16400 1.21993 0.97816 0.92496 0.97729 1.21900 0.87040 0.87277 1.18942 1.16264 0.83231 0.83928 0.76901 1.90919 1.44183 1.53639 1.51349 1.45936 1.07373 1.08710 1.74435 1.19351 0.87159 0.80382 1.04029 1.21680 0.97110 1.11640 0.89928 1.23528 0.84481 1.06655 1.02055 1.47764 1.08775 1.42800 1.06066 1.25005 0.84472 1.01194 0.92479 1.22754 0.98656 0.91455 0.88152 1.45236 1.49565 1.23971 1.13317 1.18987 1.18294 1.05776 0.92258 0.89231 1.24878 0.99966 0.97207 0.97865 1.69783 1.44510 1.16239 1.25796 0.85916 0.79600 0.78192 0.81253 1.20148 1.21337 1.21377 1.22513 0.95125 0.94909 0.84579 1.78282 1.15758 1.18960 0.93570 1.75028 0.96036 1.16159 1.26018 1.83969 1.37744 1.14303 1.72887 0.91622 0.87024 0.91532 0.81851 0.81385 0.75881 0.89278 0.89135 0.79115 0.84624 0.92269 0.93933 0.93143 0.94293 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.19 16 2 O -0.26 -2.24 10.55 -41.04 -0.43 -2.68 16 3 C 0.22 2.11 7.86 29.96 0.24 2.34 16 4 C -0.24 -2.15 10.89 -39.73 -0.43 -2.58 16 5 C -0.08 -0.78 10.66 -39.10 -0.42 -1.19 16 6 C -0.10 -1.13 7.15 -36.57 -0.26 -1.40 16 7 C 0.61 7.55 7.77 -13.09 -0.10 7.45 16 8 O -0.52 -7.72 16.87 5.12 0.09 -7.63 16 9 N -0.71 -8.07 5.54 -62.97 -0.35 -8.42 16 10 C 0.22 2.49 6.23 -5.19 -0.03 2.46 16 11 C -0.06 -0.89 6.62 -82.78 -0.55 -1.43 16 12 C -0.01 -0.19 10.72 -17.04 -0.18 -0.37 16 13 N -0.26 -4.16 3.56 -54.47 -0.19 -4.35 16 14 C 0.07 1.19 5.34 -67.70 -0.36 0.83 16 15 C 0.12 2.17 8.49 -8.50 -0.07 2.10 16 16 N -0.60 -13.65 3.78 -184.57 -0.70 -14.34 16 17 C -0.23 -5.79 10.75 -15.06 -0.16 -5.95 16 18 H 0.09 2.21 7.83 -52.49 -0.41 1.80 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 20 N -0.92 -24.78 11.51 55.49 0.64 -24.14 16 21 Si 0.92 20.48 29.55 -169.99 -5.02 15.46 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.16 3.13 6.75 -8.44 -0.06 3.07 16 26 N -0.09 -1.47 13.16 60.35 0.79 -0.68 16 27 N -0.27 -4.32 12.41 33.29 0.41 -3.91 16 28 O -0.19 -1.99 9.88 -19.26 -0.19 -2.18 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.41 4.31 8.21 -40.82 -0.34 3.98 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.19 2.33 6.78 -52.49 -0.36 1.98 16 38 H 0.14 2.22 8.14 -51.93 -0.42 1.79 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.04 0.76 6.38 -51.93 -0.33 0.43 16 43 H 0.09 2.01 7.12 -51.93 -0.37 1.64 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -30.98 379.47 -5.81 -36.79 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.17 Total: 3.98 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.40 Total: 6.39 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.60 Total: -55.84 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.54 Total: -12.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.98 -5.81 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094329060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.269 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds