Wall clock time and date at job start Wed Apr 1 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35372 * 117.00251 * 2 1 4 4 C 1.36085 * 125.58192 * 180.02562 * 3 2 1 5 5 C 1.39912 * 107.18117 * 179.97438 * 4 3 2 6 6 C 1.37828 * 106.67088 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.02890 * 179.97438 * 6 5 4 8 8 O 1.21774 * 120.00004 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00157 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.74884 * 95.24274 * 11 10 9 13 13 N 1.35316 * 106.17181 * 180.12613 * 12 11 10 14 14 C 1.46499 * 125.86841 * 179.90219 * 13 12 11 15 15 C 1.53504 * 114.20382 * 84.71602 * 14 13 12 16 16 N 1.47066 * 88.04678 * 220.37387 * 15 14 13 17 17 C 1.36941 * 136.05534 * 207.12355 * 16 15 14 18 18 H 1.07998 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99683 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00444 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99939 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47012 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47403 * 119.99440 * 21 19 17 24 24 H 1.48499 * 109.47359 * 239.99711 * 21 19 17 25 25 C 1.47064 * 87.88659 * 27.09306 * 16 15 14 26 26 N 1.28712 * 108.26333 * 359.64225 * 13 12 11 27 27 N 1.28630 * 110.18000 * 0.22465 * 26 13 12 28 28 O 1.34010 * 125.57456 * 0.26618 * 3 2 1 29 29 H 1.08997 * 109.47411 * 59.99893 * 1 2 3 30 30 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46739 * 299.99940 * 1 2 3 32 32 H 1.08002 * 126.41130 * 359.97343 * 4 3 2 33 33 H 1.07997 * 126.66493 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00017 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47322 * 59.99364 * 10 9 7 36 36 H 1.08998 * 109.46565 * 299.99467 * 10 9 7 37 37 H 1.07997 * 126.91327 * 0.02562 * 12 11 10 38 38 H 1.09002 * 113.41645 * 217.91422 * 14 13 12 39 39 H 1.09002 * 113.46865 * 105.56483 * 15 14 13 40 40 H 1.08999 * 113.46581 * 335.18259 * 15 14 13 41 41 H 0.96996 * 120.00248 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.47096 * 87.65665 * 25 16 15 43 43 H 1.09005 * 113.46966 * 218.04058 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5985 2.7925 -0.0009 6 6 2.3522 3.3810 -0.0012 7 6 2.0794 4.8166 -0.0012 8 8 3.0019 5.6116 -0.0013 9 7 0.8070 5.2608 -0.0010 10 6 0.5336 6.7001 -0.0015 11 6 -0.9560 6.9285 -0.0018 12 6 -1.7417 7.1495 1.0780 13 7 -3.0008 7.2955 0.6044 14 6 -4.1969 7.5508 1.4108 15 6 -4.4317 9.0324 1.7368 16 7 -4.8335 8.6191 3.0898 17 6 -5.6511 9.1148 4.0702 18 1 -6.1848 10.0402 3.9115 19 6 -5.7936 8.4279 5.2680 20 7 -5.1435 7.2999 5.4613 21 14 -6.9093 9.1037 6.6051 22 1 -7.5212 10.3756 6.1433 23 1 -7.9798 8.1180 6.9018 24 1 -6.1137 9.3552 7.8335 25 6 -3.9717 7.4387 2.9262 26 7 -2.9662 7.1770 -0.6767 27 7 -1.7612 6.9576 -1.0696 28 8 1.4265 2.3957 0.0051 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.1528 0.6453 -0.0006 33 1 4.5515 3.3006 -0.0017 34 1 0.0722 4.6276 -0.0013 35 1 0.9704 7.1527 -0.8917 36 1 0.9708 7.1532 0.8883 37 1 -1.4271 7.1978 2.1100 38 1 -5.0822 7.0268 1.0506 39 1 -5.2418 9.4804 1.1613 40 1 -3.5207 9.6305 1.7183 41 1 -5.2434 6.8197 6.2981 42 1 -2.9376 7.6116 3.2243 43 1 -4.3901 6.5318 3.3629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094329060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:17 Heat of formation + Delta-G solvation = 90.396675 kcal Electronic energy + Delta-G solvation = -29003.482090 eV Core-core repulsion = 24669.181766 eV Total energy + Delta-G solvation = -4334.300324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.39265 -43.81672 -40.62513 -40.14830 -39.49399 -36.46379 -35.02290 -34.27422 -33.73840 -32.62144 -30.74414 -29.78195 -28.61686 -27.44345 -26.63570 -26.11152 -23.89505 -23.47593 -23.04363 -22.32925 -21.49175 -21.24061 -20.05298 -19.15818 -18.86715 -18.26663 -18.15354 -17.48116 -17.01643 -16.95080 -16.51046 -16.31216 -16.07551 -15.80182 -15.71624 -15.49524 -14.74365 -14.56565 -14.31573 -14.27736 -14.07931 -13.97643 -13.85378 -13.51581 -13.40550 -13.05177 -13.04272 -12.81651 -12.68224 -12.54025 -12.39314 -12.07549 -11.85780 -11.69510 -11.55493 -11.09902 -11.05449 -10.88774 -10.36796 -10.31005 -9.16550 -9.13735 -8.03244 -5.38995 -0.06326 0.53338 1.07048 1.22978 1.25286 1.30199 1.47401 1.49337 1.58144 2.07147 2.07786 2.36103 2.41607 3.03474 3.14379 3.26300 3.33556 3.69058 3.73995 3.79774 3.87983 3.98993 4.12200 4.19151 4.23124 4.32646 4.45237 4.52960 4.55825 4.58243 4.65945 4.66266 4.85548 4.88603 4.97470 5.01921 5.05299 5.13195 5.26383 5.33462 5.41945 5.63254 5.74938 6.03371 6.33220 6.77917 6.93114 7.42756 7.45861 8.35319 9.14061 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.002108 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.530751 B =13276.932638 C =14267.153012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.267 6.267 3 C 0.211 3.789 4 C -0.242 4.242 5 C -0.072 4.072 6 C -0.128 4.128 7 C 0.612 3.388 8 O -0.552 6.552 9 N -0.709 5.709 10 C 0.219 3.781 11 C -0.052 4.052 12 C -0.011 4.011 13 N -0.266 5.266 14 C 0.101 3.899 15 C 0.121 3.879 16 N -0.626 5.626 17 C -0.233 4.233 18 H 0.092 0.908 19 C -0.056 4.056 20 N -0.947 5.947 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.292 1.292 25 C 0.159 3.841 26 N -0.106 5.106 27 N -0.280 5.280 28 O -0.195 6.195 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.064 0.936 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.410 0.590 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.210 0.790 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.332 -12.648 -10.281 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.181 6.181 3 C 0.114 3.886 4 C -0.262 4.262 5 C -0.093 4.093 6 C -0.178 4.178 7 C 0.401 3.599 8 O -0.432 6.432 9 N -0.359 5.359 10 C 0.094 3.906 11 C -0.191 4.191 12 C -0.165 4.165 13 N -0.058 5.058 14 C -0.002 4.002 15 C -0.006 4.006 16 N -0.352 5.352 17 C -0.361 4.361 18 H 0.110 0.890 19 C -0.250 4.250 20 N -0.594 5.594 21 Si 0.809 3.191 22 H -0.189 1.189 23 H -0.217 1.217 24 H -0.219 1.219 25 C 0.032 3.968 26 N -0.085 5.085 27 N -0.146 5.146 28 O -0.095 6.095 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.205 0.795 33 H 0.199 0.801 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.227 0.773 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.639 -12.133 -11.272 20.833 hybrid contribution -0.750 -0.004 1.915 2.056 sum 11.889 -12.137 -9.358 19.396 Atomic orbital electron populations 1.23465 0.74890 1.06971 1.02950 1.86419 1.24828 1.18072 1.88772 1.21175 0.90136 0.78323 0.98944 1.21119 0.92335 0.97092 1.15614 1.22283 0.97882 0.92983 0.96129 1.21751 0.87745 0.86973 1.21297 1.16348 0.82968 0.84332 0.76277 1.90895 1.44875 1.54525 1.52948 1.45860 1.07333 1.08635 1.74073 1.19397 0.85709 0.80698 1.04786 1.21899 0.97728 1.10373 0.89076 1.23883 0.83756 1.05837 1.03000 1.47571 1.08918 1.43404 1.05940 1.24402 0.84928 1.00078 0.90747 1.22821 0.99146 0.92498 0.86100 1.45457 1.49947 1.25328 1.14510 1.19300 1.18184 1.05675 0.92906 0.88985 1.25628 1.01687 0.97740 0.99918 1.69928 1.46153 1.17375 1.25934 0.84972 0.77733 0.77852 0.78502 1.18909 1.21714 1.21888 1.22412 0.94773 0.93057 0.86534 1.78289 1.16256 1.20146 0.93802 1.75014 0.96224 1.16476 1.26926 1.83936 1.37862 1.14545 1.73193 0.91530 0.84395 0.91678 0.79539 0.80101 0.75466 0.89323 0.87656 0.77339 0.83937 0.91096 0.93158 0.93745 0.93596 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 10.74 113.37 1.22 1.33 16 2 O -0.27 -4.18 10.55 -64.41 -0.68 -4.86 16 3 C 0.21 3.86 7.86 67.32 0.53 4.39 16 4 C -0.24 -3.89 10.89 22.17 0.24 -3.65 16 5 C -0.07 -1.32 10.66 22.58 0.24 -1.08 16 6 C -0.13 -2.77 7.15 24.22 0.17 -2.60 16 7 C 0.61 14.82 7.77 86.29 0.67 15.49 16 8 O -0.55 -16.03 16.87 -4.59 -0.08 -16.11 16 9 N -0.71 -15.40 5.54 -471.31 -2.61 -18.02 16 10 C 0.22 4.77 6.23 85.63 0.53 5.31 16 11 C -0.05 -1.34 6.62 41.60 0.28 -1.06 16 12 C -0.01 -0.30 10.72 83.49 0.89 0.59 16 13 N -0.27 -8.08 3.56 -326.24 -1.16 -9.24 16 14 C 0.10 3.30 5.34 45.49 0.24 3.54 16 15 C 0.12 4.30 8.49 83.18 0.71 5.01 16 16 N -0.63 -28.40 3.78 -737.86 -2.79 -31.20 16 17 C -0.23 -11.84 10.75 84.03 0.90 -10.94 16 18 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.06 -2.88 5.50 84.86 0.47 -2.41 16 20 N -0.95 -51.69 11.51 21.65 0.25 -51.44 16 21 Si 0.98 42.10 29.55 68.60 2.03 44.12 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.16 6.34 6.75 83.22 0.56 6.90 16 26 N -0.11 -3.49 13.16 37.02 0.49 -3.00 16 27 N -0.28 -8.77 12.41 -48.60 -0.60 -9.37 16 28 O -0.19 -3.97 9.88 13.50 0.13 -3.83 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.41 8.37 8.21 -92.71 -0.76 7.61 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.21 4.69 6.78 -2.91 -0.02 4.67 16 38 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 42 H 0.05 1.76 6.38 -2.39 -0.02 1.74 16 43 H 0.06 2.87 7.12 -2.38 -0.02 2.85 16 Total: -1.00 -65.61 379.47 2.94 -62.67 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.31 Total: 19.46 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 7.66 Total: 20.82 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -6.43 Total: -122.27 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.62 Total: -24.80 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -65.61 2.94 -62.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094329060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.067 kcal (2) G-P(sol) polarization free energy of solvation -65.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds