Wall clock time and date at job start Wed Apr 1 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47355 * 270.00171 * 3 2 1 5 5 H 1.48499 * 109.47164 * 30.00368 * 3 2 1 6 6 H 1.48499 * 109.47113 * 150.00314 * 3 2 1 7 7 C 1.38810 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00161 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.32328 * 35.35638 * 10 9 7 12 12 C 1.53029 * 109.32719 * 154.99828 * 10 9 7 13 13 C 1.53977 * 108.83049 * 175.67502 * 12 10 9 14 14 H 1.09000 * 112.99062 * 168.09053 * 13 12 10 15 15 C 1.55421 * 106.41270 * 293.82428 * 13 12 10 16 16 C 1.55177 * 100.35430 * 73.37668 * 15 13 12 17 17 H 1.09002 * 113.04951 * 162.98474 * 16 15 13 18 18 C 1.52990 * 109.32659 * 275.88984 * 10 9 7 19 19 N 1.47793 * 104.25327 * 40.54616 * 16 15 13 20 20 C 1.34769 * 125.85349 * 153.54219 * 19 16 15 21 21 O 1.21620 * 120.00427 * 359.97438 * 20 19 16 22 22 C 1.47255 * 119.99944 * 180.02562 * 20 19 16 23 23 N 1.29766 * 125.52344 * 359.68583 * 22 20 19 24 24 C 1.32598 * 116.75005 * 179.81685 * 23 22 20 25 25 C 1.34623 * 114.31395 * 0.50445 * 24 23 22 26 26 S 1.71627 * 109.59561 * 359.71401 * 25 24 23 27 27 C 1.51944 * 110.68828 * 179.67352 * 25 24 23 28 28 C 1.54230 * 104.84681 * 342.60763 * 27 25 24 29 29 C 1.52804 * 136.15211 * 180.19108 * 24 23 22 30 30 C 1.47082 * 108.28507 * 333.53953 * 19 16 15 31 31 H 0.97006 * 119.99576 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99917 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.57374 * 55.87402 * 12 10 9 34 34 H 1.09000 * 109.68970 * 295.54664 * 12 10 9 35 35 H 1.09007 * 111.23455 * 191.14676 * 15 13 12 36 36 H 1.09000 * 111.23948 * 315.59676 * 15 13 12 37 37 H 1.09003 * 109.53108 * 304.52931 * 18 10 9 38 38 H 1.08997 * 109.53141 * 64.74909 * 18 10 9 39 39 H 1.08999 * 110.36190 * 101.44667 * 27 25 24 40 40 H 1.08993 * 110.36573 * 223.76237 * 27 25 24 41 41 H 1.09000 * 110.95233 * 268.38140 * 28 27 25 42 42 H 1.09002 * 110.98762 * 144.67786 * 28 27 25 43 43 H 1.09006 * 110.31296 * 316.78645 * 29 24 23 44 44 H 1.08993 * 110.31457 * 78.97125 * 29 24 23 45 45 H 1.09005 * 109.97274 * 241.73706 * 30 19 16 46 46 H 1.09005 * 109.97299 * 120.46498 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9648 -3.5497 0.5947 12 6 1.1778 -4.7497 0.6098 13 6 1.9148 -6.0976 0.5051 14 1 1.4486 -6.8848 1.0976 15 6 2.0162 -6.4261 -1.0106 16 6 3.1047 -5.4087 -1.4442 17 1 3.5532 -5.6485 -2.4083 18 6 2.4394 -4.0212 -1.4366 19 7 4.0884 -5.4361 -0.3415 20 6 5.3992 -5.1409 -0.4456 21 8 5.8663 -4.8172 -1.5208 22 6 6.2663 -5.2112 0.7425 23 7 5.8821 -5.5381 1.9381 24 6 6.8131 -5.5486 2.8823 25 6 8.0412 -5.2016 2.4536 26 16 7.9885 -4.8585 0.7728 27 6 9.0385 -5.2335 3.5994 28 6 8.1739 -5.2178 4.8765 29 6 6.8618 -5.8551 4.3785 30 6 3.3914 -5.8409 0.8887 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 0.2350 -4.8057 0.0655 34 1 0.9817 -4.5210 1.6573 35 1 2.3484 -7.4519 -1.1709 36 1 1.0718 -6.2350 -1.5201 37 1 1.5436 -4.0431 -2.0572 38 1 3.1368 -3.2804 -1.8276 39 1 9.6359 -6.1442 3.5570 40 1 9.6824 -4.3547 3.5664 41 1 8.0056 -4.1973 5.2207 42 1 8.6271 -5.8223 5.6622 43 1 6.0072 -5.4063 4.8847 44 1 6.8777 -6.9323 4.5437 45 1 3.4505 -5.0436 1.6297 46 1 3.8368 -6.7529 1.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094961082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:04 Heat of formation + Delta-G solvation = 39.833591 kcal Electronic energy + Delta-G solvation = -28914.137954 eV Core-core repulsion = 25123.938264 eV Total energy + Delta-G solvation = -3790.199689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99160 -40.28595 -38.25276 -36.13069 -34.74211 -32.62884 -31.18958 -30.70132 -28.94049 -28.57129 -27.81745 -25.86777 -24.91991 -23.63206 -22.45549 -21.40744 -21.03673 -19.96647 -19.37762 -18.47495 -18.15026 -17.08512 -16.79423 -16.20414 -15.88847 -15.32685 -14.89446 -14.46617 -14.30935 -14.09357 -13.61182 -13.44854 -13.37405 -13.19156 -13.10281 -12.85280 -12.66446 -12.33030 -12.24277 -12.18532 -11.71076 -11.59877 -11.58036 -11.36344 -11.33731 -10.99151 -10.92971 -10.78830 -10.41527 -10.32334 -10.14995 -10.01672 -9.69092 -9.61215 -9.55842 -9.49848 -8.85726 -8.77052 -8.38587 -6.91390 -5.73217 -3.01225 0.19521 0.91418 1.62434 2.19955 3.01396 3.22547 3.46214 3.51582 3.53085 3.59939 4.14164 4.34093 4.59113 4.60796 4.61310 4.70990 4.87402 5.00725 5.07350 5.20438 5.29088 5.39117 5.39524 5.45727 5.50740 5.52463 5.55994 5.60806 5.73852 5.78146 5.83294 5.87141 5.89878 5.98401 6.02068 6.13303 6.21602 6.28048 6.40477 6.52225 6.58222 6.71464 7.02992 7.12872 7.35775 7.57938 7.75207 8.12901 8.45972 9.57161 10.14688 10.49836 11.49492 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003785 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.983721 B = 7394.940318 C = 8650.423588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.178 3.822 11 H 0.048 0.952 12 C -0.121 4.121 13 C -0.102 4.102 14 H 0.099 0.901 15 C -0.125 4.125 16 C 0.134 3.866 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.579 5.579 20 C 0.611 3.389 21 O -0.533 6.533 22 C 0.005 3.995 23 N -0.411 5.411 24 C 0.035 3.965 25 C -0.273 4.273 26 S 0.249 5.751 27 C -0.036 4.036 28 C -0.117 4.117 29 C -0.040 4.040 30 C 0.116 3.884 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -18.189 7.638 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.085 0.915 9 N -0.364 5.364 10 C 0.068 3.932 11 H 0.066 0.934 12 C -0.159 4.159 13 C -0.121 4.121 14 H 0.117 0.883 15 C -0.163 4.163 16 C 0.031 3.969 17 H 0.114 0.886 18 C -0.185 4.185 19 N -0.312 5.312 20 C 0.395 3.605 21 O -0.410 6.410 22 C -0.272 4.272 23 N -0.128 5.128 24 C -0.102 4.102 25 C -0.396 4.396 26 S 0.507 5.493 27 C -0.076 4.076 28 C -0.156 4.156 29 C -0.080 4.080 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.930 -17.612 6.315 23.936 hybrid contribution -0.089 0.879 0.828 1.211 sum 14.840 -16.733 7.143 23.479 Atomic orbital electron populations 1.69663 1.05021 1.25526 1.58050 1.24696 0.95477 0.97529 1.03158 0.86241 0.78686 0.84049 0.77591 1.21685 1.21758 1.20870 1.19215 0.90872 0.84189 1.42234 0.91529 1.42420 1.05683 0.99773 1.88502 1.20259 0.94355 0.86050 0.92528 0.93416 1.22122 0.98951 0.93266 1.01578 1.22691 0.94722 0.98514 0.96162 0.88315 1.23024 0.99054 0.98188 0.96038 1.22487 0.87136 0.97189 0.90048 0.88639 1.22846 1.00162 0.94023 1.01512 1.48282 1.06171 1.64764 1.11959 1.16220 0.80594 0.78291 0.85392 1.90852 1.73880 1.49137 1.27116 1.27269 0.96068 1.08585 0.95274 1.66081 1.34933 1.13287 0.98536 1.21748 0.87216 1.03380 0.97808 1.26959 1.02826 1.09108 1.00727 1.83829 1.06716 1.59431 0.99345 1.20697 0.95134 1.03046 0.88723 1.22345 0.94479 1.02191 0.96604 1.20887 0.99005 1.01593 0.86469 1.22269 0.91199 1.00655 0.86551 0.93598 0.78339 0.91628 0.91615 0.91307 0.89324 0.91254 0.91776 0.89528 0.90117 0.90193 0.89460 0.89693 0.89582 0.89982 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 23.19 29.55 -169.99 -5.02 18.16 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.72 9.91 -15.06 -0.15 -6.86 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -18.46 5.11 -53.42 -0.27 -18.74 16 10 C 0.18 3.61 2.39 -67.92 -0.16 3.45 16 11 H 0.05 1.06 5.89 -51.93 -0.31 0.76 16 12 C -0.12 -1.94 4.95 -26.21 -0.13 -2.07 16 13 C -0.10 -1.28 4.33 -87.93 -0.38 -1.66 16 14 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 15 C -0.13 -1.52 6.18 -24.29 -0.15 -1.67 16 16 C 0.13 2.07 3.99 -65.61 -0.26 1.81 16 17 H 0.10 1.46 8.01 -51.93 -0.42 1.04 16 18 C -0.14 -2.72 5.28 -26.28 -0.14 -2.86 16 19 N -0.58 -9.35 2.36 -163.13 -0.38 -9.73 16 20 C 0.61 10.76 7.85 -12.60 -0.10 10.66 16 21 O -0.53 -10.59 17.19 5.26 0.09 -10.50 16 22 C 0.00 0.08 7.32 -14.76 -0.11 -0.03 16 23 N -0.41 -6.05 8.03 -6.78 -0.05 -6.10 16 24 C 0.03 0.42 7.62 -82.49 -0.63 -0.20 16 25 C -0.27 -3.04 7.17 -34.97 -0.25 -3.29 16 26 S 0.25 3.18 23.03 -107.50 -2.48 0.70 16 27 C -0.04 -0.26 6.80 -26.62 -0.18 -0.45 16 28 C -0.12 -0.73 7.11 -25.49 -0.18 -0.91 16 29 C -0.04 -0.33 6.81 -26.24 -0.18 -0.51 16 30 C 0.12 1.65 4.25 -2.83 -0.01 1.63 16 31 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.38 10.25 7.79 -40.82 -0.32 9.93 16 33 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.09 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 1.33 6.38 -51.93 -0.33 1.00 16 46 H 0.07 0.90 7.65 -51.93 -0.40 0.51 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -33.82 374.11 -11.64 -45.46 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.77 Total: 6.41 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.11 Total: -3.43 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.01 Total: -62.44 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.48 Total: 0.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.82 -11.64 -45.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094961082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.295 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds