Wall clock time and date at job start Wed Apr 1 2020 04:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47355 * 270.00171 * 3 2 1 5 5 H 1.48499 * 109.47164 * 30.00368 * 3 2 1 6 6 H 1.48499 * 109.47113 * 150.00314 * 3 2 1 7 7 C 1.38810 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00156 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00161 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.32328 * 35.35638 * 10 9 7 12 12 C 1.53029 * 109.32719 * 154.99828 * 10 9 7 13 13 C 1.53977 * 108.83049 * 175.67502 * 12 10 9 14 14 H 1.09000 * 112.99062 * 168.09053 * 13 12 10 15 15 C 1.55421 * 106.41270 * 293.82428 * 13 12 10 16 16 C 1.55177 * 100.35430 * 73.37668 * 15 13 12 17 17 H 1.09002 * 113.04951 * 162.98474 * 16 15 13 18 18 C 1.52990 * 109.32659 * 275.88984 * 10 9 7 19 19 N 1.47793 * 104.25327 * 40.54616 * 16 15 13 20 20 C 1.34769 * 125.85349 * 153.54219 * 19 16 15 21 21 O 1.21620 * 120.00427 * 359.97438 * 20 19 16 22 22 C 1.47255 * 119.99944 * 180.02562 * 20 19 16 23 23 N 1.29766 * 125.52344 * 359.68583 * 22 20 19 24 24 C 1.32598 * 116.75005 * 179.81685 * 23 22 20 25 25 C 1.34623 * 114.31395 * 0.50445 * 24 23 22 26 26 S 1.71627 * 109.59561 * 359.71401 * 25 24 23 27 27 C 1.51944 * 110.68828 * 179.67352 * 25 24 23 28 28 C 1.54230 * 104.84681 * 342.60763 * 27 25 24 29 29 C 1.52804 * 136.15211 * 180.19108 * 24 23 22 30 30 C 1.47082 * 108.28507 * 333.53953 * 19 16 15 31 31 H 0.97006 * 119.99576 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99917 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.57374 * 55.87402 * 12 10 9 34 34 H 1.09000 * 109.68970 * 295.54664 * 12 10 9 35 35 H 1.09007 * 111.23455 * 191.14676 * 15 13 12 36 36 H 1.09000 * 111.23948 * 315.59676 * 15 13 12 37 37 H 1.09003 * 109.53108 * 304.52931 * 18 10 9 38 38 H 1.08997 * 109.53141 * 64.74909 * 18 10 9 39 39 H 1.08999 * 110.36190 * 101.44667 * 27 25 24 40 40 H 1.08993 * 110.36573 * 223.76237 * 27 25 24 41 41 H 1.09000 * 110.95233 * 268.38140 * 28 27 25 42 42 H 1.09002 * 110.98762 * 144.67786 * 28 27 25 43 43 H 1.09006 * 110.31296 * 316.78645 * 29 24 23 44 44 H 1.08993 * 110.31457 * 78.97125 * 29 24 23 45 45 H 1.09005 * 109.97274 * 241.73706 * 30 19 16 46 46 H 1.09005 * 109.97299 * 120.46498 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9648 -3.5497 0.5947 12 6 1.1778 -4.7497 0.6098 13 6 1.9148 -6.0976 0.5051 14 1 1.4486 -6.8848 1.0976 15 6 2.0162 -6.4261 -1.0106 16 6 3.1047 -5.4087 -1.4442 17 1 3.5532 -5.6485 -2.4083 18 6 2.4394 -4.0212 -1.4366 19 7 4.0884 -5.4361 -0.3415 20 6 5.3992 -5.1409 -0.4456 21 8 5.8663 -4.8172 -1.5208 22 6 6.2663 -5.2112 0.7425 23 7 5.8821 -5.5381 1.9381 24 6 6.8131 -5.5486 2.8823 25 6 8.0412 -5.2016 2.4536 26 16 7.9885 -4.8585 0.7728 27 6 9.0385 -5.2335 3.5994 28 6 8.1739 -5.2178 4.8765 29 6 6.8618 -5.8551 4.3785 30 6 3.3914 -5.8409 0.8887 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 0.2350 -4.8057 0.0655 34 1 0.9817 -4.5210 1.6573 35 1 2.3484 -7.4519 -1.1709 36 1 1.0718 -6.2350 -1.5201 37 1 1.5436 -4.0431 -2.0572 38 1 3.1368 -3.2804 -1.8276 39 1 9.6359 -6.1442 3.5570 40 1 9.6824 -4.3547 3.5664 41 1 8.0056 -4.1973 5.2207 42 1 8.6271 -5.8223 5.6622 43 1 6.0072 -5.4063 4.8847 44 1 6.8777 -6.9323 4.5437 45 1 3.4505 -5.0436 1.6297 46 1 3.8368 -6.7529 1.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094961082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:03 Heat of formation + Delta-G solvation = 18.784993 kcal Electronic energy + Delta-G solvation = -28915.050689 eV Core-core repulsion = 25123.938264 eV Total energy + Delta-G solvation = -3791.112425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22144 -41.26208 -39.59087 -36.97455 -36.57808 -34.25621 -32.87743 -32.07187 -29.86387 -29.58921 -29.23864 -27.02801 -26.06759 -25.68191 -23.51038 -22.51948 -22.24906 -20.98362 -20.67452 -19.79002 -19.23418 -19.02635 -17.96143 -17.34502 -16.97867 -16.61436 -16.41859 -16.07438 -15.57589 -15.22928 -15.09856 -14.69808 -14.57653 -14.37227 -14.26210 -14.02507 -13.75970 -13.64905 -13.52605 -13.25449 -13.01899 -12.95368 -12.85566 -12.81263 -12.31719 -12.28516 -12.18744 -12.13327 -11.98399 -11.91563 -11.64320 -11.59536 -11.36237 -11.03186 -10.87979 -10.77343 -10.51661 -9.88373 -9.55837 -9.04101 -8.00822 -5.28234 -0.85704 -0.09516 0.64736 1.13789 1.38179 1.40067 1.48152 1.82818 2.01505 2.49104 2.61671 3.30174 3.37471 3.46073 3.49971 3.66221 3.70347 3.97730 4.07016 4.13871 4.18586 4.24559 4.35834 4.39419 4.41715 4.50571 4.58552 4.62177 4.72391 4.76546 4.78006 4.85260 4.88872 4.90220 5.03665 5.08881 5.10938 5.17313 5.21329 5.28526 5.29827 5.32225 5.41429 5.48641 5.53442 6.22901 6.27945 6.36101 6.83577 7.28707 8.05155 8.30227 9.22073 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003785 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.983721 B = 7394.940318 C = 8650.423588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.053 0.947 9 N -0.734 5.734 10 C 0.177 3.823 11 H 0.022 0.978 12 C -0.113 4.113 13 C -0.084 4.084 14 H 0.142 0.858 15 C -0.110 4.110 16 C 0.132 3.868 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.583 5.583 20 C 0.602 3.398 21 O -0.572 6.572 22 C -0.041 4.041 23 N -0.417 5.417 24 C 0.005 3.995 25 C -0.256 4.256 26 S 0.252 5.748 27 C -0.038 4.038 28 C -0.108 4.108 29 C -0.039 4.039 30 C 0.118 3.882 31 H 0.253 0.747 32 H 0.376 0.624 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.296 -20.448 9.650 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.792 3.208 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.071 0.929 9 N -0.374 5.374 10 C 0.069 3.931 11 H 0.040 0.960 12 C -0.151 4.151 13 C -0.103 4.103 14 H 0.160 0.840 15 C -0.148 4.148 16 C 0.029 3.971 17 H 0.114 0.886 18 C -0.175 4.175 19 N -0.314 5.314 20 C 0.387 3.613 21 O -0.452 6.452 22 C -0.315 4.315 23 N -0.135 5.135 24 C -0.131 4.131 25 C -0.379 4.379 26 S 0.509 5.491 27 C -0.077 4.077 28 C -0.147 4.147 29 C -0.078 4.078 30 C -0.004 4.004 31 H 0.062 0.938 32 H 0.208 0.792 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.899 -19.913 8.334 26.810 hybrid contribution -0.270 1.584 0.271 1.630 sum 15.629 -18.329 8.606 25.579 Atomic orbital electron populations 1.69786 1.06136 1.26054 1.59311 1.25401 0.96377 1.00476 1.03665 0.85305 0.77662 0.80307 0.77529 1.21430 1.21147 1.20419 1.19378 0.90490 0.85864 1.41426 0.92866 1.42572 1.05409 1.00779 1.88646 1.20425 0.93867 0.85641 0.93191 0.95989 1.22022 0.98681 0.93615 1.00789 1.22758 0.92879 0.97360 0.97307 0.83982 1.23033 0.98127 0.98460 0.95163 1.22533 0.88097 0.95960 0.90530 0.88602 1.22641 0.99433 0.95360 1.00068 1.48436 1.06006 1.64122 1.12794 1.16621 0.81272 0.77657 0.85732 1.90800 1.74757 1.50991 1.28645 1.26937 0.97251 1.12122 0.95198 1.66047 1.36117 1.12737 0.98607 1.22513 0.87181 1.04011 0.99400 1.27616 1.03885 1.06138 1.00254 1.83734 1.05049 1.59107 1.01168 1.20996 0.94745 1.04829 0.87172 1.22404 0.92956 1.02608 0.96718 1.21093 1.00198 1.02979 0.83564 1.22312 0.92389 1.00322 0.85338 0.93812 0.79200 0.90677 0.92150 0.88217 0.87895 0.90872 0.96382 0.87031 0.88822 0.90414 0.86142 0.90063 0.87763 0.92488 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.13 13.06 21.65 0.28 -59.85 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.96 48.75 29.55 68.60 2.03 50.78 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.24 -14.31 9.91 84.03 0.83 -13.48 16 8 H 0.05 3.25 7.83 -2.91 -0.02 3.23 16 9 N -0.73 -38.94 5.11 -322.93 -1.65 -40.59 16 10 C 0.18 7.45 2.39 45.00 0.11 7.55 16 11 H 0.02 1.04 5.89 -2.39 -0.01 1.03 16 12 C -0.11 -3.52 4.95 30.93 0.15 -3.36 16 13 C -0.08 -1.89 4.33 -9.05 -0.04 -1.93 16 14 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 15 C -0.11 -2.35 6.18 32.17 0.20 -2.15 16 16 C 0.13 4.09 3.99 45.79 0.18 4.27 16 17 H 0.10 2.97 8.01 -2.39 -0.02 2.96 16 18 C -0.13 -5.28 5.28 30.89 0.16 -5.11 16 19 N -0.58 -19.26 2.36 -788.27 -1.86 -21.11 16 20 C 0.60 22.38 7.85 86.61 0.68 23.06 16 21 O -0.57 -24.31 17.19 -4.09 -0.07 -24.38 16 22 C -0.04 -1.32 7.32 87.37 0.64 -0.68 16 23 N -0.42 -12.40 8.03 -175.37 -1.41 -13.81 16 24 C 0.00 0.11 7.62 42.30 0.32 0.44 16 25 C -0.26 -5.33 7.17 25.26 0.18 -5.15 16 26 S 0.25 6.55 23.03 -56.49 -1.30 5.25 16 27 C -0.04 -0.42 6.80 30.66 0.21 -0.21 16 28 C -0.11 -0.95 7.11 31.40 0.22 -0.73 16 29 C -0.04 -0.56 6.81 30.91 0.21 -0.35 16 30 C 0.12 3.28 4.25 86.85 0.37 3.65 16 31 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.38 20.74 7.79 -92.71 -0.72 20.02 16 33 H 0.07 2.23 7.97 -2.39 -0.02 2.21 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.10 2.00 7.75 -2.39 -0.02 1.98 16 37 H 0.07 2.77 8.00 -2.39 -0.02 2.75 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 1.89 6.38 -2.38 -0.02 1.87 16 46 H 0.09 2.12 7.65 -2.38 -0.02 2.10 16 Total: -1.00 -78.62 374.11 1.21 -77.41 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.29 Total: 24.01 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.90 Total: 2.29 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -4.64 Total: -135.36 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.07 Total: -24.38 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.30 Total: 5.25 kcal Total: -78.62 1.21 -77.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094961082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.195 kcal (2) G-P(sol) polarization free energy of solvation -78.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds